Wall clock time and date at job start Wed Apr 1 2020 03:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35920 * 117.00458 * 2 1 4 4 C 1.38748 * 120.04126 * 359.71954 * 3 2 1 5 5 C 1.38116 * 119.96023 * 179.77221 * 4 3 2 6 6 C 1.38387 * 120.04014 * 0.50106 * 5 4 3 7 7 Cl 1.73601 * 119.95753 * 179.76929 * 6 5 4 8 8 C 1.38346 * 120.08734 * 359.75413 * 6 5 4 9 9 C 1.38166 * 120.04172 * 359.97438 * 8 6 5 10 10 C 1.50697 * 120.02623 * 179.97438 * 9 8 6 11 11 S 1.81399 * 109.47040 * 270.02123 * 10 9 8 12 12 O 1.42100 * 110.54372 * 291.62022 * 11 10 9 13 13 O 1.42101 * 110.54386 * 68.36883 * 11 10 9 14 14 N 1.65600 * 104.45217 * 179.97438 * 11 10 9 15 15 C 1.36933 * 119.99766 * 270.00241 * 14 11 10 16 16 H 1.07995 * 120.00010 * 307.66150 * 15 14 11 17 17 C 1.38813 * 120.00152 * 127.67482 * 15 14 11 18 18 N 1.31621 * 119.99801 * 345.40951 * 17 15 14 19 19 Si 1.86803 * 120.00395 * 165.41094 * 17 15 14 20 20 H 1.48501 * 109.46903 * 89.99744 * 19 17 15 21 21 H 1.48494 * 109.47365 * 209.99761 * 19 17 15 22 22 H 1.48503 * 109.46877 * 330.00064 * 19 17 15 23 23 C 1.46498 * 119.99872 * 89.99723 * 14 11 10 24 24 C 1.53001 * 117.49814 * 181.75467 * 23 14 11 25 25 C 1.52991 * 60.00068 * 252.51228 * 24 23 14 26 26 H 1.08999 * 109.47730 * 300.00409 * 1 2 3 27 27 H 1.09005 * 109.47023 * 60.00216 * 1 2 3 28 28 H 1.09000 * 109.47605 * 180.02562 * 1 2 3 29 29 H 1.08010 * 120.01470 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.97940 * 180.23614 * 5 4 3 31 31 H 1.07999 * 119.98429 * 180.02562 * 8 6 5 32 32 H 1.09004 * 109.46666 * 30.01369 * 10 9 8 33 33 H 1.08993 * 109.47320 * 150.01587 * 10 9 8 34 34 H 0.96998 * 120.00373 * 178.13348 * 18 17 15 35 35 H 1.09000 * 115.55300 * 327.46263 * 23 14 11 36 36 H 1.08998 * 117.49604 * 0.02562 * 24 23 14 37 37 H 1.09000 * 117.49684 * 145.01698 * 24 23 14 38 38 H 1.09007 * 117.49926 * 252.51134 * 25 24 23 39 39 H 1.08999 * 117.52056 * 107.47936 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2914 2.3752 -0.0059 5 6 1.9202 3.6049 -0.0011 6 6 3.3022 3.6763 -0.0010 7 17 4.0904 5.2231 -0.0010 8 6 4.0566 2.5166 -0.0004 9 6 3.4312 1.2846 0.0005 10 6 4.2532 0.0216 0.0005 11 16 4.5825 -0.4855 -1.7098 12 8 3.3840 -0.9123 -2.3429 13 8 5.4573 0.4374 -2.3439 14 7 5.4830 -1.8677 -1.5650 15 6 6.8489 -1.7918 -1.5057 16 1 7.3929 -1.2473 -2.2633 17 6 7.5345 -2.4149 -0.4720 18 7 6.8833 -2.8276 0.5948 19 14 9.3813 -2.6677 -0.5948 20 1 10.0813 -1.4919 -0.0179 21 1 9.7647 -3.8897 0.1567 22 1 9.7660 -2.8223 -2.0208 23 6 4.8183 -3.1716 -1.5002 24 6 5.7029 -4.4076 -1.3252 25 6 5.0312 -4.1321 -2.6719 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 0.2127 2.3198 -0.0109 30 1 1.3330 4.5114 -0.0018 31 1 5.1350 2.5742 0.0001 32 1 5.1975 0.2028 0.5138 33 1 3.7058 -0.7683 0.5147 34 1 7.3578 -3.2872 1.3051 35 1 3.8422 -3.1781 -1.0150 36 1 6.7794 -4.2505 -1.2578 37 1 5.3089 -5.2275 -0.7246 38 1 4.1953 -4.7708 -2.9574 39 1 5.6655 -3.7936 -3.4912 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354492413.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:41 Heat of formation + Delta-G solvation = -52.558361 kcal Electronic energy + Delta-G solvation = -26669.599905 eV Core-core repulsion = 22732.146583 eV Total energy + Delta-G solvation = -3937.453322 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.18944 -37.60337 -37.25556 -36.13995 -35.64418 -34.47629 -33.01574 -32.74492 -31.05656 -29.93735 -27.54605 -26.65723 -24.98744 -22.20623 -21.65571 -21.32746 -20.75164 -18.47672 -17.92008 -16.89600 -16.61709 -16.46668 -16.15930 -15.70919 -15.25257 -14.82897 -14.52072 -14.48113 -13.95021 -13.81770 -13.49764 -13.32738 -13.04858 -12.44918 -12.30135 -12.09564 -11.89255 -11.83004 -11.51156 -11.43312 -11.19262 -11.15286 -10.76599 -10.73133 -10.70559 -10.63768 -10.61341 -10.46274 -10.39014 -10.08741 -9.78691 -9.23804 -8.77558 -8.72573 -7.96554 -7.52525 -6.61178 -4.33968 1.11178 1.28135 1.76884 2.23615 3.06210 3.13644 3.19031 3.34875 3.65610 3.89544 4.22396 4.62998 4.68431 4.75507 4.95623 5.04818 5.15020 5.17944 5.21820 5.37834 5.43344 5.51273 5.55961 5.85198 5.89572 5.93677 6.08816 6.12779 6.17906 6.21780 6.36005 6.45933 6.51248 6.57648 6.73313 6.94603 7.20653 7.28854 7.40889 7.56626 8.28881 8.65193 9.19708 10.35646 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.012987 B = 0.004380 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.546501 B = 6390.852856 C = 7744.302651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.297 6.297 3 C 0.137 3.863 4 C -0.199 4.199 5 C -0.080 4.080 6 C -0.068 4.068 7 Cl -0.076 7.076 8 C -0.069 4.069 9 C -0.084 4.084 10 C -0.595 4.595 11 S 2.499 3.501 12 O -0.991 6.991 13 O -0.976 6.976 14 N -0.785 5.785 15 C -0.261 4.261 16 H 0.100 0.900 17 C 0.049 3.951 18 N -0.815 5.815 19 Si 0.912 3.088 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.262 1.262 23 C 0.122 3.878 24 C -0.150 4.150 25 C -0.210 4.210 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.146 0.854 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.276 0.724 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.519 4.686 3.057 10.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.209 6.209 3 C 0.090 3.910 4 C -0.218 4.218 5 C -0.099 4.099 6 C -0.095 4.095 7 Cl -0.047 7.047 8 C -0.088 4.088 9 C -0.086 4.086 10 C -0.713 4.713 11 S 2.600 3.400 12 O -0.981 6.981 13 O -0.966 6.966 14 N -0.607 5.607 15 C -0.408 4.408 16 H 0.117 0.883 17 C -0.166 4.166 18 N -0.451 5.451 19 Si 0.736 3.264 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.186 1.186 23 C 0.014 3.986 24 C -0.189 4.189 25 C -0.250 4.250 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.120 0.880 29 H 0.156 0.844 30 H 0.153 0.847 31 H 0.164 0.836 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.086 0.914 35 H 0.121 0.879 36 H 0.127 0.873 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.870 5.137 2.479 10.546 hybrid contribution 0.661 0.118 1.038 1.237 sum -8.209 5.255 3.518 10.362 Atomic orbital electron populations 1.23100 0.78528 1.04283 1.01013 1.86202 1.21180 1.25825 1.87691 1.18935 0.91696 0.84860 0.95516 1.21116 1.00219 0.91394 1.09025 1.20739 0.92243 0.97897 0.98982 1.20666 0.92700 0.86467 1.09654 1.98342 1.80843 1.28263 1.97249 1.20936 1.01035 0.89355 0.97506 1.18672 0.90336 0.94396 1.05204 1.29946 1.06511 1.01289 1.33588 1.12105 0.73562 0.75231 0.79072 1.93367 1.49900 1.80504 1.74326 1.93379 1.64928 1.64906 1.73364 1.52690 1.12883 1.13876 1.81213 1.19536 0.80209 1.33568 1.07459 0.88288 1.25929 1.00521 0.96298 0.93855 1.70083 1.37637 1.32091 1.05254 0.86167 0.82249 0.78464 0.79504 1.19575 1.20286 1.18595 1.20838 0.95574 0.81999 1.00233 1.23091 1.00890 0.97989 0.96933 1.23365 1.03341 1.04646 0.93632 0.92852 0.92477 0.87953 0.84417 0.84748 0.83600 0.85100 0.85394 0.91429 0.87861 0.87340 0.90680 0.90145 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.29 16 2 O -0.30 -5.04 9.54 -19.49 -0.19 -5.23 16 3 C 0.14 2.37 6.66 -39.22 -0.26 2.11 16 4 C -0.20 -2.77 9.04 -39.44 -0.36 -3.13 16 5 C -0.08 -1.08 9.82 -39.57 -0.39 -1.47 16 6 C -0.07 -1.06 6.32 -39.49 -0.25 -1.31 16 7 Cl -0.08 -1.04 28.95 -51.86 -1.50 -2.55 16 8 C -0.07 -1.23 9.48 -39.57 -0.38 -1.60 16 9 C -0.08 -1.60 5.15 -104.48 -0.54 -2.14 16 10 C -0.60 -12.36 6.08 36.00 0.22 -12.14 16 11 S 2.50 59.95 5.37 -107.50 -0.58 59.37 16 12 O -0.99 -25.13 17.26 -57.54 -0.99 -26.12 16 13 O -0.98 -25.81 17.10 -57.54 -0.98 -26.79 16 14 N -0.78 -18.85 2.94 -53.43 -0.16 -19.01 16 15 C -0.26 -6.41 8.21 -15.06 -0.12 -6.54 16 16 H 0.10 2.50 7.69 -52.49 -0.40 2.09 16 17 C 0.05 1.12 3.14 -17.43 -0.05 1.06 16 18 N -0.82 -18.93 11.64 55.49 0.65 -18.28 16 19 Si 0.91 18.06 29.43 -169.99 -5.00 13.06 16 20 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 22 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 23 C 0.12 2.69 5.41 -67.93 -0.37 2.33 16 24 C -0.15 -3.04 8.37 -26.74 -0.22 -3.27 16 25 C -0.21 -4.14 10.38 -26.74 -0.28 -4.42 16 26 H 0.05 0.48 7.67 -51.93 -0.40 0.08 16 27 H 0.06 0.58 7.65 -51.93 -0.40 0.19 16 28 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.14 1.44 6.30 -52.48 -0.33 1.11 16 30 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.15 2.52 8.06 -52.49 -0.42 2.10 16 32 H 0.13 2.68 8.09 -51.92 -0.42 2.26 16 33 H 0.13 2.60 7.53 -51.93 -0.39 2.21 16 34 H 0.28 6.00 8.31 -40.82 -0.34 5.66 16 35 H 0.10 2.18 8.13 -51.93 -0.42 1.75 16 36 H 0.11 2.35 5.11 -51.93 -0.27 2.09 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 LS Contribution 356.59 15.07 5.37 5.37 Total: -1.00 -29.66 356.59 -10.09 -39.75 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -4.70 Total: 9.64 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: -2.01 Total: -29.22 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.49 Total: -37.29 kcal Atomic # 8 Polarization: -55.98 SS G_CDS: -2.16 Total: -58.14 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.00 Total: 13.06 kcal Atomic # 16 Polarization: 59.95 SS G_CDS: -0.58 Total: 59.37 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.50 Total: -2.55 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.66 -10.09 -39.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354492413.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.811 kcal (2) G-P(sol) polarization free energy of solvation -29.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds