Wall clock time and date at job start Wed Apr 1 2020 03:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47144 * 2 1 4 4 C 1.46499 * 120.00137 * 270.00139 * 3 2 1 5 5 C 1.50699 * 109.47159 * 270.00009 * 4 3 2 6 6 H 1.07998 * 120.00162 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99924 * 179.97438 * 5 4 3 8 8 N 1.31507 * 120.00177 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99927 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47304 * 89.99570 * 9 7 5 11 11 H 1.48495 * 109.47070 * 210.00106 * 9 7 5 12 12 H 1.48501 * 109.46895 * 329.99905 * 9 7 5 13 13 C 1.34776 * 120.00020 * 90.00176 * 3 2 1 14 14 O 1.21283 * 120.00191 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00113 * 359.97438 * 13 3 2 16 16 S 1.81399 * 109.47251 * 180.02562 * 15 13 3 17 17 O 1.42094 * 110.54344 * 68.38090 * 16 15 13 18 18 O 1.42095 * 110.54327 * 291.62679 * 16 15 13 19 19 C 1.76202 * 104.44815 * 180.02562 * 16 15 13 20 20 C 1.38231 * 120.01020 * 115.00132 * 19 16 15 21 21 C 1.38214 * 120.01873 * 180.02562 * 20 19 16 22 22 C 1.38265 * 120.02565 * 0.02562 * 21 20 19 23 23 C 1.38196 * 120.01248 * 359.97438 * 22 21 20 24 24 C 1.38334 * 120.00480 * 295.02146 * 19 16 15 25 25 Cl 1.73594 * 120.01427 * 359.95562 * 24 19 16 26 26 H 1.08993 * 109.47134 * 299.99740 * 1 2 3 27 27 H 1.08991 * 109.47089 * 60.00060 * 1 2 3 28 28 H 1.09000 * 109.46901 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47057 * 240.00005 * 2 1 3 30 30 H 1.09001 * 109.47075 * 119.99935 * 2 1 3 31 31 H 1.08998 * 109.47001 * 29.99661 * 4 3 2 32 32 H 1.09001 * 109.47473 * 149.99965 * 4 3 2 33 33 H 0.97002 * 120.00259 * 180.02562 * 8 7 5 34 34 H 1.09007 * 109.46701 * 60.00490 * 15 13 3 35 35 H 1.08999 * 109.47529 * 300.00754 * 15 13 3 36 36 H 1.08001 * 119.99177 * 359.97438 * 20 19 16 37 37 H 1.07999 * 119.99303 * 180.02562 * 21 20 19 38 38 H 1.07999 * 119.99414 * 179.72574 * 22 21 20 39 39 H 1.08002 * 120.00635 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1490 2.3897 -2.8780 8 7 3.3490 3.1257 -3.6180 9 14 5.9135 2.0967 -3.4169 10 1 5.9776 0.8753 -4.2591 11 1 6.3920 3.2640 -4.2003 12 1 6.7735 1.9180 -2.2196 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9913 1.3063 2.4723 16 16 2.3837 2.4179 3.8511 17 8 1.4497 3.4870 3.9110 18 8 3.7821 2.6625 3.9119 19 6 2.0468 1.4644 5.2940 20 6 3.0754 1.1197 6.1507 21 6 2.8114 0.3714 7.2823 22 6 1.5184 -0.0334 7.5580 23 6 0.4891 0.3106 6.7024 24 6 0.7528 1.0603 5.5696 25 17 -0.5397 1.4934 4.4947 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5817 1.6877 -2.0283 32 1 2.0955 3.1411 -1.1384 33 1 3.6748 3.5157 -4.4443 34 1 2.6213 0.4186 2.5302 35 1 0.9433 1.0124 2.5299 36 1 4.0858 1.4345 5.9352 37 1 3.6153 0.1026 7.9515 38 1 1.3134 -0.6219 8.4401 39 1 -0.5209 -0.0053 6.9180 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428030188.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:57 Heat of formation + Delta-G solvation = -74.704055 kcal Electronic energy + Delta-G solvation = -26056.036109 eV Core-core repulsion = 22117.622478 eV Total energy + Delta-G solvation = -3938.413631 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.70316 -39.31095 -37.25620 -36.76915 -35.83902 -35.55212 -32.90972 -31.84873 -31.29556 -30.51672 -30.11728 -26.84922 -23.85289 -23.28328 -23.14736 -22.79622 -19.51184 -18.63264 -18.24011 -17.01141 -16.59149 -16.50861 -16.37762 -16.15725 -15.39964 -15.19080 -15.00264 -14.61095 -14.35196 -14.17360 -14.06203 -13.57641 -13.35214 -12.89077 -12.78900 -12.25634 -12.11887 -12.06388 -12.02794 -11.90640 -11.85938 -11.70440 -11.58912 -11.30939 -11.00147 -10.90117 -10.83114 -10.78303 -10.52460 -10.18814 -9.91258 -9.70923 -9.40213 -9.32575 -8.45735 -7.86716 -6.06989 -4.12215 -0.11885 0.30232 0.65763 1.48708 2.82086 2.96695 3.01333 3.30172 3.37680 3.42095 3.53285 3.89873 4.08093 4.32238 4.39995 4.42767 4.61038 4.63514 4.74712 4.96852 5.03950 5.08746 5.27673 5.27841 5.30590 5.45228 5.51219 5.58617 5.65293 5.77840 5.91575 6.12558 6.18656 6.38682 6.87636 7.33826 7.39460 7.87635 8.14655 8.17692 8.63923 8.92545 9.52900 11.01348 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.017666 B = 0.003403 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.590565 B = 8227.160208 C = 8871.464452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.101 3.899 3 N -0.579 5.579 4 C 0.243 3.757 5 C -0.531 4.531 6 H 0.060 0.940 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.534 3.466 14 O -0.534 6.534 15 C -0.651 4.651 16 S 2.528 3.472 17 O -0.905 6.905 18 O -0.917 6.917 19 C -0.661 4.661 20 C -0.009 4.009 21 C -0.135 4.135 22 C -0.058 4.058 23 C -0.129 4.129 24 C 0.045 3.955 25 Cl -0.041 7.041 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.264 0.736 34 H 0.159 0.841 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.511 -12.232 21.737 26.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.023 4.023 3 N -0.309 5.309 4 C 0.124 3.876 5 C -0.570 4.570 6 H 0.078 0.922 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.197 1.197 13 C 0.318 3.682 14 O -0.413 6.413 15 C -0.781 4.781 16 S 2.701 3.299 17 O -0.902 6.902 18 O -0.914 6.914 19 C -0.746 4.746 20 C -0.028 4.028 21 C -0.154 4.154 22 C -0.076 4.076 23 C -0.148 4.148 24 C 0.017 3.983 25 Cl -0.011 7.011 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.177 0.823 35 H 0.172 0.828 36 H 0.175 0.825 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.150 -10.672 21.417 24.974 hybrid contribution 0.385 -1.229 -0.251 1.312 sum -6.765 -11.900 21.166 25.207 Atomic orbital electron populations 1.22242 0.96488 1.01742 1.02575 1.21537 0.93793 0.83803 1.03147 1.48153 1.62179 1.13409 1.07190 1.19446 0.96746 0.93934 0.77434 1.21411 0.96723 1.32406 1.06479 0.92216 1.24932 0.98000 0.94748 0.96327 1.69925 1.35795 1.33155 1.14282 0.86474 0.84515 0.77681 0.78658 1.20644 1.20996 1.19711 1.18795 0.79335 0.86299 0.83779 1.90827 1.46641 1.17245 1.86546 1.30882 1.13853 1.18628 1.14713 1.04908 0.75308 0.75194 0.74452 1.93593 1.64176 1.47278 1.85165 1.93546 1.30044 1.82332 1.85489 1.30967 0.98543 1.20857 1.24203 1.21127 0.98678 0.91419 0.91577 1.21460 0.97476 0.98734 0.97725 1.21476 0.92385 0.95796 0.97949 1.21207 1.00979 0.99116 0.93496 1.20580 0.88119 0.96231 0.93389 1.98462 1.48807 1.91270 1.62583 0.93100 0.91633 0.91807 0.89276 0.91490 0.94398 0.93333 0.92603 0.82295 0.82841 0.82524 0.84142 0.84166 0.83858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.10 1.55 5.93 -4.04 -0.02 1.52 16 3 N -0.58 -12.12 2.46 -175.06 -0.43 -12.55 16 4 C 0.24 6.29 5.16 -5.19 -0.03 6.26 16 5 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 9 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 13 C 0.53 11.31 7.69 -10.99 -0.08 11.23 16 14 O -0.53 -13.81 15.44 5.56 0.09 -13.72 16 15 C -0.65 -9.70 4.83 36.01 0.17 -9.53 16 16 S 2.53 41.52 3.73 -107.50 -0.40 41.12 16 17 O -0.91 -17.28 16.47 -57.55 -0.95 -18.23 16 18 O -0.92 -17.36 16.74 -57.55 -0.96 -18.32 16 19 C -0.66 -8.04 5.58 -39.55 -0.22 -8.26 16 20 C -0.01 -0.09 9.50 -39.59 -0.38 -0.47 16 21 C -0.14 -0.96 10.05 -39.58 -0.40 -1.36 16 22 C -0.06 -0.36 10.05 -39.59 -0.40 -0.76 16 23 C -0.13 -1.00 9.83 -39.55 -0.39 -1.39 16 24 C 0.04 0.48 6.29 -39.49 -0.25 0.23 16 25 Cl -0.04 -0.47 24.84 -51.86 -1.29 -1.76 16 26 H 0.05 0.62 7.22 -51.93 -0.37 0.24 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 30 H 0.07 0.81 6.44 -51.93 -0.33 0.47 16 31 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 32 H 0.05 1.42 7.42 -51.93 -0.39 1.03 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.16 1.74 7.40 -51.92 -0.38 1.35 16 35 H 0.15 1.87 5.35 -51.92 -0.28 1.59 16 36 H 0.16 1.48 7.21 -52.49 -0.38 1.10 16 37 H 0.14 0.59 8.06 -52.49 -0.42 0.16 16 38 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 39 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 LS Contribution 357.56 15.07 5.39 5.39 Total: -1.00 -37.43 357.56 -9.50 -46.93 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -4.63 Total: -2.04 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -2.03 Total: -17.97 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.31 Total: -38.24 kcal Atomic # 8 Polarization: -48.45 SS G_CDS: -1.82 Total: -50.27 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 41.52 SS G_CDS: -0.40 Total: 41.12 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.29 Total: -1.76 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -37.43 -9.50 -46.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428030188.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.771 kcal (2) G-P(sol) polarization free energy of solvation -37.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds