Wall clock time and date at job start Wed Apr 1 2020 03:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47144 * 2 1 4 4 C 1.46499 * 120.00137 * 270.00139 * 3 2 1 5 5 C 1.50699 * 109.47159 * 270.00009 * 4 3 2 6 6 H 1.07998 * 120.00162 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99924 * 179.97438 * 5 4 3 8 8 N 1.31507 * 120.00177 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99927 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47304 * 89.99570 * 9 7 5 11 11 H 1.48495 * 109.47070 * 210.00106 * 9 7 5 12 12 H 1.48501 * 109.46895 * 329.99905 * 9 7 5 13 13 C 1.34776 * 120.00020 * 90.00176 * 3 2 1 14 14 O 1.21283 * 120.00191 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00113 * 359.97438 * 13 3 2 16 16 S 1.81399 * 109.47251 * 180.02562 * 15 13 3 17 17 O 1.42094 * 110.54344 * 68.38090 * 16 15 13 18 18 O 1.42095 * 110.54327 * 291.62679 * 16 15 13 19 19 C 1.76202 * 104.44815 * 180.02562 * 16 15 13 20 20 C 1.38231 * 120.01020 * 115.00132 * 19 16 15 21 21 C 1.38214 * 120.01873 * 180.02562 * 20 19 16 22 22 C 1.38265 * 120.02565 * 0.02562 * 21 20 19 23 23 C 1.38196 * 120.01248 * 359.97438 * 22 21 20 24 24 C 1.38334 * 120.00480 * 295.02146 * 19 16 15 25 25 Cl 1.73594 * 120.01427 * 359.95562 * 24 19 16 26 26 H 1.08993 * 109.47134 * 299.99740 * 1 2 3 27 27 H 1.08991 * 109.47089 * 60.00060 * 1 2 3 28 28 H 1.09000 * 109.46901 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47057 * 240.00005 * 2 1 3 30 30 H 1.09001 * 109.47075 * 119.99935 * 2 1 3 31 31 H 1.08998 * 109.47001 * 29.99661 * 4 3 2 32 32 H 1.09001 * 109.47473 * 149.99965 * 4 3 2 33 33 H 0.97002 * 120.00259 * 180.02562 * 8 7 5 34 34 H 1.09007 * 109.46701 * 60.00490 * 15 13 3 35 35 H 1.08999 * 109.47529 * 300.00754 * 15 13 3 36 36 H 1.08001 * 119.99177 * 359.97438 * 20 19 16 37 37 H 1.07999 * 119.99303 * 180.02562 * 21 20 19 38 38 H 1.07999 * 119.99414 * 179.72574 * 22 21 20 39 39 H 1.08002 * 120.00635 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1490 2.3897 -2.8780 8 7 3.3490 3.1257 -3.6180 9 14 5.9135 2.0967 -3.4169 10 1 5.9776 0.8753 -4.2591 11 1 6.3920 3.2640 -4.2003 12 1 6.7735 1.9180 -2.2196 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9913 1.3063 2.4723 16 16 2.3837 2.4179 3.8511 17 8 1.4497 3.4870 3.9110 18 8 3.7821 2.6625 3.9119 19 6 2.0468 1.4644 5.2940 20 6 3.0754 1.1197 6.1507 21 6 2.8114 0.3714 7.2823 22 6 1.5184 -0.0334 7.5580 23 6 0.4891 0.3106 6.7024 24 6 0.7528 1.0603 5.5696 25 17 -0.5397 1.4934 4.4947 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5817 1.6877 -2.0283 32 1 2.0955 3.1411 -1.1384 33 1 3.6748 3.5157 -4.4443 34 1 2.6213 0.4186 2.5302 35 1 0.9433 1.0124 2.5299 36 1 4.0858 1.4345 5.9352 37 1 3.6153 0.1026 7.9515 38 1 1.3134 -0.6219 8.4401 39 1 -0.5209 -0.0053 6.9180 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428030188.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:57 Heat of formation + Delta-G solvation = -102.075003 kcal Electronic energy + Delta-G solvation = -26057.223002 eV Core-core repulsion = 22117.622478 eV Total energy + Delta-G solvation = -3939.600525 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.01047 -40.36635 -38.40990 -37.73386 -37.31998 -37.08120 -34.99492 -32.57771 -32.17271 -31.87871 -31.43210 -28.78949 -25.10756 -24.54744 -24.23785 -23.91529 -20.77989 -20.04871 -19.34049 -18.68500 -18.12177 -17.94688 -17.57483 -17.21775 -16.82320 -16.56499 -16.12735 -15.85796 -15.70528 -15.00876 -14.99849 -14.85947 -14.71062 -14.49972 -13.90896 -13.67291 -13.49913 -13.33581 -13.27644 -13.23436 -13.14247 -12.74511 -12.71606 -12.66810 -12.60062 -12.51551 -12.21375 -12.13888 -11.95562 -11.76438 -11.68950 -11.15656 -10.65883 -10.57198 -9.99755 -9.65406 -8.25453 -6.40143 -1.29650 -0.46264 0.02916 0.72593 1.34798 1.39144 1.41353 1.50896 1.69804 2.00453 2.31155 2.38694 2.67812 2.97931 3.04983 3.21840 3.50149 3.78054 3.91394 3.93441 4.15800 4.17077 4.20103 4.29267 4.34787 4.56292 4.69095 4.82459 4.83034 4.90692 4.99119 5.07426 5.15927 5.21507 5.34233 5.48660 5.63515 5.73040 6.00127 6.43056 6.68017 7.01181 7.30903 8.82471 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.017666 B = 0.003403 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.590565 B = 8227.160208 C = 8871.464452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.089 3.911 3 N -0.583 5.583 4 C 0.256 3.744 5 C -0.549 4.549 6 H 0.058 0.942 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.259 1.259 11 H -0.282 1.282 12 H -0.273 1.273 13 C 0.520 3.480 14 O -0.595 6.595 15 C -0.634 4.634 16 S 2.515 3.485 17 O -0.950 6.950 18 O -0.960 6.960 19 C -0.664 4.664 20 C -0.027 4.027 21 C -0.125 4.125 22 C -0.039 4.039 23 C -0.124 4.124 24 C 0.028 3.972 25 Cl -0.057 7.057 26 H 0.057 0.943 27 H 0.042 0.958 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.034 0.966 32 H 0.000 1.000 33 H 0.268 0.732 34 H 0.204 0.796 35 H 0.184 0.816 36 H 0.153 0.847 37 H 0.176 0.824 38 H 0.187 0.813 39 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.569 -16.265 24.687 30.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.033 4.033 3 N -0.312 5.312 4 C 0.135 3.865 5 C -0.587 4.587 6 H 0.076 0.924 7 C -0.191 4.191 8 N -0.566 5.566 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.207 1.207 12 H -0.198 1.198 13 C 0.306 3.694 14 O -0.478 6.478 15 C -0.764 4.764 16 S 2.697 3.303 17 O -0.947 6.947 18 O -0.957 6.957 19 C -0.755 4.755 20 C -0.046 4.046 21 C -0.144 4.144 22 C -0.057 4.057 23 C -0.143 4.143 24 C 0.000 4.000 25 Cl -0.028 7.028 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.122 0.878 29 H 0.103 0.897 30 H 0.127 0.873 31 H 0.052 0.948 32 H 0.018 0.982 33 H 0.077 0.923 34 H 0.221 0.779 35 H 0.201 0.799 36 H 0.171 0.829 37 H 0.194 0.806 38 H 0.204 0.796 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -7.221 -14.717 24.326 29.334 hybrid contribution 0.344 -0.078 -1.011 1.071 sum -6.876 -14.795 23.316 28.457 Atomic orbital electron populations 1.22220 0.94370 1.04118 1.01866 1.21993 0.95602 0.80649 1.05053 1.48173 1.61981 1.15441 1.05602 1.18906 0.95964 0.91817 0.79768 1.21711 0.97703 1.32536 1.06750 0.92388 1.25873 1.02537 0.94312 0.96392 1.70046 1.37876 1.33951 1.14758 0.85404 0.78785 0.78324 0.78262 1.18405 1.20697 1.19762 1.19687 0.78142 0.85918 0.85661 1.90792 1.49165 1.20126 1.87747 1.30763 1.16627 1.18940 1.10099 1.04531 0.74118 0.75912 0.75783 1.93535 1.64582 1.50422 1.86159 1.93487 1.31976 1.83781 1.86460 1.30080 1.00156 1.22693 1.22523 1.21328 0.98110 0.92457 0.92698 1.21896 0.99219 0.96787 0.96493 1.22063 0.91174 0.94142 0.98309 1.21642 1.03004 0.97570 0.92055 1.20758 0.86995 0.97619 0.94637 1.98455 1.49330 1.91604 1.63435 0.92427 0.93838 0.87776 0.89679 0.87289 0.94822 0.98163 0.92301 0.77901 0.79915 0.82900 0.80635 0.79609 0.81104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.98 10.24 71.98 0.74 -3.25 16 2 C 0.09 2.58 5.93 86.38 0.51 3.10 16 3 N -0.58 -25.06 2.46 -826.16 -2.03 -27.09 16 4 C 0.26 14.04 5.16 85.63 0.44 14.48 16 5 C -0.55 -32.00 9.39 25.60 0.24 -31.76 16 6 H 0.06 3.31 7.81 -2.91 -0.02 3.29 16 7 C 0.01 0.48 5.46 84.66 0.46 0.94 16 8 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 9 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 10 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 12 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 13 C 0.52 22.83 7.69 87.66 0.67 23.50 16 14 O -0.60 -33.10 15.44 -3.04 -0.05 -33.14 16 15 C -0.63 -18.64 4.83 71.24 0.34 -18.29 16 16 S 2.52 85.65 3.73 -56.49 -0.21 85.44 16 17 O -0.95 -38.66 16.47 -127.64 -2.10 -40.76 16 18 O -0.96 -38.49 16.74 -127.64 -2.14 -40.63 16 19 C -0.66 -15.41 5.58 22.29 0.12 -15.28 16 20 C -0.03 -0.49 9.50 22.26 0.21 -0.27 16 21 C -0.13 -1.21 10.05 22.27 0.22 -0.98 16 22 C -0.04 -0.26 10.05 22.27 0.22 -0.04 16 23 C -0.12 -1.38 9.83 22.29 0.22 -1.16 16 24 C 0.03 0.54 6.29 22.33 0.14 0.68 16 25 Cl -0.06 -1.26 24.84 -2.72 -0.07 -1.33 16 26 H 0.06 1.29 7.22 -2.39 -0.02 1.27 16 27 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.08 2.56 8.07 -2.39 -0.02 2.54 16 30 H 0.11 2.25 6.44 -2.39 -0.02 2.23 16 31 H 0.03 1.84 8.07 -2.39 -0.02 1.82 16 32 H 0.00 0.01 7.42 -2.39 -0.02 0.00 16 33 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 34 H 0.20 3.96 7.40 -2.39 -0.02 3.94 16 35 H 0.18 4.20 5.35 -2.39 -0.01 4.19 16 36 H 0.15 2.80 7.21 -2.91 -0.02 2.78 16 37 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16 38 H 0.19 -0.35 8.06 -2.91 -0.02 -0.38 16 39 H 0.17 0.95 8.06 -2.91 -0.02 0.92 16 Total: -1.00 -90.54 357.56 1.35 -89.19 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: 1.08 Total: 5.61 kcal Atomic # 6 Polarization: -32.89 SS G_CDS: 4.55 Total: -28.34 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -1.74 Total: -83.52 kcal Atomic # 8 Polarization: -110.25 SS G_CDS: -4.28 Total: -114.54 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 16 Polarization: 85.65 SS G_CDS: -0.21 Total: 85.44 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.07 Total: -1.33 kcal Total: -90.54 1.35 -89.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428030188.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.883 kcal (2) G-P(sol) polarization free energy of solvation -90.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds