Wall clock time and date at job start Wed Apr 1 2020 02:57:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09000 * 109.51245 * 2 1
4 4 C 1.52873 * 109.58488 * 239.97777 * 2 1 3
5 5 N 1.47153 * 108.60948 * 187.91940 * 4 2 1
6 6 S 1.65601 * 120.98415 * 230.50025 * 5 4 2
7 7 O 1.42103 * 106.40057 * 156.18009 * 6 5 4
8 8 O 1.42099 * 106.39969 * 23.25888 * 6 5 4
9 9 C 1.76201 * 107.21795 * 269.71925 * 6 5 4
10 10 C 1.38636 * 119.75729 * 114.99776 * 9 6 5
11 11 C 1.37603 * 120.26454 * 179.97438 * 10 9 6
12 12 C 1.40740 * 119.77190 * 359.97438 * 11 10 9
13 13 C 1.41394 * 120.24158 * 179.97438 * 12 11 10
14 14 H 1.07997 * 120.00281 * 204.39846 * 13 12 11
15 15 C 1.39949 * 119.99787 * 24.40304 * 13 12 11
16 16 N 1.30819 * 119.99997 * 17.87341 * 15 13 12
17 17 Si 1.86797 * 119.99947 * 197.87911 * 15 13 12
18 18 H 1.48501 * 109.47185 * 359.97438 * 17 15 13
19 19 H 1.48496 * 109.47119 * 119.99785 * 17 15 13
20 20 H 1.48502 * 109.46949 * 240.00102 * 17 15 13
21 21 C 1.40679 * 119.52415 * 359.97438 * 12 11 10
22 22 C 1.37757 * 119.73058 * 359.76775 * 21 12 11
23 23 Cl 1.73603 * 119.88961 * 180.22999 * 22 21 12
24 24 C 1.47157 * 118.03526 * 50.23260 * 5 4 2
25 25 C 1.53297 * 108.37907 * 309.71144 * 24 5 4
26 26 O 1.42962 * 109.51398 * 120.09399 * 2 1 3
27 27 H 1.08998 * 109.46920 * 299.90172 * 1 2 3
28 28 H 1.08998 * 109.47091 * 59.90627 * 1 2 3
29 29 H 1.08997 * 109.46760 * 179.90717 * 1 2 3
30 30 H 1.09004 * 109.61782 * 68.09949 * 4 2 1
31 31 H 1.08997 * 109.52383 * 307.68646 * 4 2 1
32 32 H 1.08002 * 119.86656 * 359.97438 * 10 9 6
33 33 H 1.07996 * 120.11501 * 180.02562 * 11 10 9
34 34 H 0.97002 * 120.00124 * 180.02562 * 16 15 13
35 35 H 1.08003 * 120.13557 * 179.97438 * 21 12 11
36 36 H 1.09001 * 109.68417 * 69.43417 * 24 5 4
37 37 H 1.08994 * 109.68418 * 189.95715 * 24 5 4
38 38 H 1.09002 * 109.51325 * 172.22781 * 25 24 5
39 39 H 1.09001 * 109.51569 * 292.38050 * 25 24 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8941 1.0274 0.0000
4 6 2.0424 -0.7206 -1.2470
5 7 3.5012 -0.8767 -1.1331
6 16 4.5065 -0.4192 -2.3670
7 8 5.7745 -0.1650 -1.7781
8 8 3.7946 0.5476 -3.1270
9 6 4.7165 -1.8199 -3.4151
10 6 4.2389 -1.7836 -4.7161
11 6 4.3977 -2.8713 -5.5438
12 6 5.0484 -4.0241 -5.0659
13 6 5.2165 -5.1476 -5.9077
14 1 5.3387 -6.1309 -5.4780
15 6 5.2246 -4.9855 -7.2977
16 7 5.4286 -3.8023 -7.8170
17 14 4.9441 -6.4586 -8.4115
18 1 4.7396 -7.6739 -7.5829
19 1 3.7417 -6.2229 -9.2505
20 1 6.1286 -6.6503 -9.2864
21 6 5.5304 -4.0505 -3.7445
22 6 5.3652 -2.9483 -2.9348
23 17 5.9636 -2.9743 -1.3054
24 6 4.0408 -1.4457 0.1122
25 6 3.4313 -0.6847 1.2952
26 8 2.0075 -0.6757 1.1659
27 1 -0.3633 0.5123 0.8909
28 1 -0.3633 0.5153 -0.8891
29 1 -0.3633 -1.0277 -0.0017
30 1 1.8043 -0.1325 -2.1334
31 1 1.5728 -1.7016 -1.3197
32 1 3.7402 -0.8980 -5.0814
33 1 4.0251 -2.8402 -6.5570
34 1 5.4339 -3.6898 -8.7805
35 1 6.0308 -4.9302 -3.3673
36 1 3.7757 -2.5009 0.1787
37 1 5.1253 -1.3381 0.1253
38 1 3.7091 -1.1773 2.2270
39 1 3.8030 0.3400 1.2993
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000451012370.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:57:35
Heat of formation + Delta-G solvation = -108.218189 kcal
Electronic energy + Delta-G solvation = -26567.230058 eV
Core-core repulsion = 22627.363145 eV
Total energy + Delta-G solvation = -3939.866913 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 345.063 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-39.30880 -37.91399 -36.69886 -35.84008 -35.21020 -34.61108 -34.09740 -32.90979
-30.50362 -29.42533 -28.49692 -26.10675 -25.74407 -23.10240 -21.71939 -21.48237
-20.91515 -18.56049 -17.88924 -17.55024 -16.69179 -16.58572 -15.81789 -15.64003
-15.10697 -14.81169 -14.62204 -14.51224 -14.09615 -13.76306 -13.44997 -12.97679
-12.85464 -12.57781 -12.43155 -12.31121 -12.20080 -11.83628 -11.74256 -11.72518
-11.56516 -11.42904 -11.29418 -11.13924 -11.12081 -10.71659 -10.60557 -10.51975
-10.28960 -10.13991 -10.01713 -9.62579 -9.54304 -8.62054 -8.18213 -7.75153
-7.30836 -4.98737 1.06203 2.00464 2.57417 2.77245 2.78936 2.83605
2.88444 3.43232 3.55963 3.71233 4.05357 4.39391 4.66028 4.91161
4.93330 5.05146 5.13532 5.20391 5.21333 5.44439 5.46042 5.54366
5.64953 5.73214 5.87866 5.89436 5.96934 6.09641 6.24705 6.42915
6.49432 6.61731 6.68662 6.79990 6.93533 7.10179 7.15560 7.36270
7.52734 7.69758 8.10299 8.29587 8.37976 9.60356
Molecular weight = 345.06amu
Principal moments of inertia in cm(-1)
A = 0.017747 B = 0.003587 C = 0.003436
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1577.353004 B = 7803.445746 C = 8147.100950
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.076 3.924
3 H 0.062 0.938
4 C 0.092 3.908
5 N -1.002 6.002
6 S 2.694 3.306
7 O -0.966 6.966
8 O -0.980 6.980
9 C -0.790 4.790
10 C -0.008 4.008
11 C -0.181 4.181
12 C 0.142 3.858
13 C -0.423 4.423
14 H 0.092 0.908
15 C 0.071 3.929
16 N -0.757 5.757
17 Si 0.921 3.079
18 H -0.255 1.255
19 H -0.266 1.266
20 H -0.268 1.268
21 C -0.223 4.223
22 C 0.093 3.907
23 Cl -0.103 7.103
24 C 0.085 3.915
25 C 0.051 3.949
26 O -0.378 6.378
27 H 0.064 0.936
28 H 0.074 0.926
29 H 0.066 0.934
30 H 0.101 0.899
31 H 0.075 0.925
32 H 0.116 0.884
33 H 0.128 0.872
34 H 0.292 0.708
35 H 0.112 0.888
36 H 0.076 0.924
37 H 0.104 0.896
38 H 0.102 0.898
39 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.322 2.229 8.977 11.204
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C 0.017 3.983
3 H 0.080 0.920
4 C -0.034 4.034
5 N -0.839 5.839
6 S 2.793 3.207
7 O -0.957 6.957
8 O -0.971 6.971
9 C -0.885 4.885
10 C -0.029 4.029
11 C -0.201 4.201
12 C 0.138 3.862
13 C -0.449 4.449
14 H 0.110 0.890
15 C -0.153 4.153
16 N -0.378 5.378
17 Si 0.743 3.257
18 H -0.178 1.178
19 H -0.190 1.190
20 H -0.193 1.193
21 C -0.244 4.244
22 C 0.065 3.935
23 Cl -0.075 7.075
24 C -0.041 4.041
25 C -0.027 4.027
26 O -0.297 6.297
27 H 0.083 0.917
28 H 0.093 0.907
29 H 0.085 0.915
30 H 0.119 0.881
31 H 0.093 0.907
32 H 0.134 0.866
33 H 0.146 0.854
34 H 0.104 0.896
35 H 0.130 0.870
36 H 0.094 0.906
37 H 0.122 0.878
38 H 0.121 0.879
39 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -5.974 3.130 8.935 11.195
hybrid contribution 0.222 -1.273 -0.926 1.590
sum -5.752 1.857 8.009 10.034
Atomic orbital electron populations
1.21736 0.92447 1.03230 1.02687 1.22347 0.95224 0.95357 0.85418
0.92021 1.22006 0.79991 1.01916 0.99441 1.57926 1.16402 1.79936
1.29596 1.01370 0.72706 0.74328 0.72301 1.93526 1.39905 1.84881
1.77347 1.93461 1.74022 1.58805 1.70783 1.29111 1.29170 1.18901
1.11355 1.20267 0.94371 0.97658 0.90559 1.21410 1.04138 0.94160
1.00381 1.17725 0.85717 0.92587 0.90154 1.20010 1.38786 0.95474
0.90663 0.88966 1.26192 0.91698 0.97934 0.99485 1.69811 1.28559
1.24363 1.15112 0.86031 0.79284 0.80911 0.79445 1.17812 1.19047
1.19334 1.20937 1.09936 0.97676 0.95863 1.19973 0.95254 0.95023
0.83297 1.98307 1.87718 1.98361 1.23075 1.22315 1.00059 0.98261
0.83455 1.22964 0.81212 1.00165 0.98389 1.87907 1.20996 1.77675
1.43156 0.91668 0.90665 0.91504 0.88074 0.90672 0.86609 0.85429
0.89621 0.87000 0.90589 0.87758 0.87950 0.92797
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.36 9.57 37.16 0.36 -1.01 16
2 C 0.08 0.93 3.39 -26.80 -0.09 0.84 16
3 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
4 C 0.09 1.30 5.98 -3.75 -0.02 1.28 16
5 N -1.00 -16.38 3.34 -113.30 -0.38 -16.76 16
6 S 2.69 53.81 5.21 -107.50 -0.56 53.25 16
7 O -0.97 -20.88 15.15 -57.17 -0.87 -21.75 16
8 O -0.98 -20.75 15.56 -57.17 -0.89 -21.63 16
9 C -0.79 -17.49 5.93 -39.25 -0.23 -17.73 16
10 C -0.01 -0.18 9.52 -39.67 -0.38 -0.56 16
11 C -0.18 -4.34 8.70 -38.87 -0.34 -4.68 16
12 C 0.14 3.46 5.57 -106.83 -0.60 2.86 16
13 C -0.42 -9.85 9.05 -37.74 -0.34 -10.19 16
14 H 0.09 2.02 7.91 -52.49 -0.42 1.60 16
15 C 0.07 1.54 5.14 -17.34 -0.09 1.45 16
16 N -0.76 -17.25 10.95 55.55 0.61 -16.64 16
17 Si 0.92 16.13 29.60 -169.99 -5.03 11.10 16
18 H -0.25 -4.42 7.11 56.52 0.40 -4.02 16
19 H -0.27 -4.59 7.11 56.52 0.40 -4.19 16
20 H -0.27 -4.66 7.11 56.52 0.40 -4.26 16
21 C -0.22 -5.13 9.57 -38.84 -0.37 -5.50 16
22 C 0.09 2.04 6.29 -39.57 -0.25 1.79 16
23 Cl -0.10 -1.95 22.44 -51.86 -1.16 -3.11 16
24 C 0.08 1.23 4.77 -3.53 -0.02 1.22 16
25 C 0.05 0.63 6.98 37.31 0.26 0.89 16
26 O -0.38 -5.01 10.39 -35.23 -0.37 -5.38 16
27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16
28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
30 H 0.10 1.41 6.94 -51.93 -0.36 1.05 16
31 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16
32 H 0.12 2.46 7.31 -52.49 -0.38 2.07 16
33 H 0.13 3.07 6.15 -52.49 -0.32 2.74 16
34 H 0.29 5.92 8.30 -40.82 -0.34 5.58 16
35 H 0.11 2.39 8.06 -52.48 -0.42 1.97 16
36 H 0.08 1.07 7.78 -51.93 -0.40 0.67 16
37 H 0.10 1.60 5.21 -51.93 -0.27 1.32 16
38 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16
39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
LS Contribution 339.06 15.07 5.11 5.11
Total: -1.00 -28.06 339.06 -10.32 -38.38
By element:
Atomic # 1 Polarization: 11.44 SS G_CDS: -4.67 Total: 6.77 kcal
Atomic # 6 Polarization: -27.22 SS G_CDS: -2.11 Total: -29.33 kcal
Atomic # 7 Polarization: -33.63 SS G_CDS: 0.23 Total: -33.40 kcal
Atomic # 8 Polarization: -46.64 SS G_CDS: -2.12 Total: -48.76 kcal
Atomic # 14 Polarization: 16.13 SS G_CDS: -5.03 Total: 11.10 kcal
Atomic # 16 Polarization: 53.81 SS G_CDS: -0.56 Total: 53.25 kcal
Atomic # 17 Polarization: -1.95 SS G_CDS: -1.16 Total: -3.11 kcal
Total LS contribution 5.11 Total: 5.11 kcal
Total: -28.06 -10.32 -38.38 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000451012370.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -69.839 kcal
(2) G-P(sol) polarization free energy of solvation -28.060 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.899 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.379 kcal
(6) G-S(sol) free energy of system = (1) + (5) -108.218 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds