Wall clock time and date at job start Wed Apr 1 2020 02:57:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09000 * 109.51245 * 2 1
4 4 C 1.52873 * 109.58488 * 239.97777 * 2 1 3
5 5 N 1.47153 * 108.60948 * 187.91940 * 4 2 1
6 6 S 1.65601 * 120.98415 * 230.50025 * 5 4 2
7 7 O 1.42103 * 106.40057 * 156.18009 * 6 5 4
8 8 O 1.42099 * 106.39969 * 23.25888 * 6 5 4
9 9 C 1.76201 * 107.21795 * 269.71925 * 6 5 4
10 10 C 1.38636 * 119.75729 * 114.99776 * 9 6 5
11 11 C 1.37603 * 120.26454 * 179.97438 * 10 9 6
12 12 C 1.40740 * 119.77190 * 359.97438 * 11 10 9
13 13 C 1.41394 * 120.24158 * 179.97438 * 12 11 10
14 14 H 1.07997 * 120.00281 * 204.39846 * 13 12 11
15 15 C 1.39949 * 119.99787 * 24.40304 * 13 12 11
16 16 N 1.30819 * 119.99997 * 17.87341 * 15 13 12
17 17 Si 1.86797 * 119.99947 * 197.87911 * 15 13 12
18 18 H 1.48501 * 109.47185 * 359.97438 * 17 15 13
19 19 H 1.48496 * 109.47119 * 119.99785 * 17 15 13
20 20 H 1.48502 * 109.46949 * 240.00102 * 17 15 13
21 21 C 1.40679 * 119.52415 * 359.97438 * 12 11 10
22 22 C 1.37757 * 119.73058 * 359.76775 * 21 12 11
23 23 Cl 1.73603 * 119.88961 * 180.22999 * 22 21 12
24 24 C 1.47157 * 118.03526 * 50.23260 * 5 4 2
25 25 C 1.53297 * 108.37907 * 309.71144 * 24 5 4
26 26 O 1.42962 * 109.51398 * 120.09399 * 2 1 3
27 27 H 1.08998 * 109.46920 * 299.90172 * 1 2 3
28 28 H 1.08998 * 109.47091 * 59.90627 * 1 2 3
29 29 H 1.08997 * 109.46760 * 179.90717 * 1 2 3
30 30 H 1.09004 * 109.61782 * 68.09949 * 4 2 1
31 31 H 1.08997 * 109.52383 * 307.68646 * 4 2 1
32 32 H 1.08002 * 119.86656 * 359.97438 * 10 9 6
33 33 H 1.07996 * 120.11501 * 180.02562 * 11 10 9
34 34 H 0.97002 * 120.00124 * 180.02562 * 16 15 13
35 35 H 1.08003 * 120.13557 * 179.97438 * 21 12 11
36 36 H 1.09001 * 109.68417 * 69.43417 * 24 5 4
37 37 H 1.08994 * 109.68418 * 189.95715 * 24 5 4
38 38 H 1.09002 * 109.51325 * 172.22781 * 25 24 5
39 39 H 1.09001 * 109.51569 * 292.38050 * 25 24 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8941 1.0274 0.0000
4 6 2.0424 -0.7206 -1.2470
5 7 3.5012 -0.8767 -1.1331
6 16 4.5065 -0.4192 -2.3670
7 8 5.7745 -0.1650 -1.7781
8 8 3.7946 0.5476 -3.1270
9 6 4.7165 -1.8199 -3.4151
10 6 4.2389 -1.7836 -4.7161
11 6 4.3977 -2.8713 -5.5438
12 6 5.0484 -4.0241 -5.0659
13 6 5.2165 -5.1476 -5.9077
14 1 5.3387 -6.1309 -5.4780
15 6 5.2246 -4.9855 -7.2977
16 7 5.4286 -3.8023 -7.8170
17 14 4.9441 -6.4586 -8.4115
18 1 4.7396 -7.6739 -7.5829
19 1 3.7417 -6.2229 -9.2505
20 1 6.1286 -6.6503 -9.2864
21 6 5.5304 -4.0505 -3.7445
22 6 5.3652 -2.9483 -2.9348
23 17 5.9636 -2.9743 -1.3054
24 6 4.0408 -1.4457 0.1122
25 6 3.4313 -0.6847 1.2952
26 8 2.0075 -0.6757 1.1659
27 1 -0.3633 0.5123 0.8909
28 1 -0.3633 0.5153 -0.8891
29 1 -0.3633 -1.0277 -0.0017
30 1 1.8043 -0.1325 -2.1334
31 1 1.5728 -1.7016 -1.3197
32 1 3.7402 -0.8980 -5.0814
33 1 4.0251 -2.8402 -6.5570
34 1 5.4339 -3.6898 -8.7805
35 1 6.0308 -4.9302 -3.3673
36 1 3.7757 -2.5009 0.1787
37 1 5.1253 -1.3381 0.1253
38 1 3.7091 -1.1773 2.2270
39 1 3.8030 0.3400 1.2993
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000451012370.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:57:34
Heat of formation + Delta-G solvation = -125.546611 kcal
Electronic energy + Delta-G solvation = -26567.981475 eV
Core-core repulsion = 22627.363145 eV
Total energy + Delta-G solvation = -3940.618330 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 345.063 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-40.35688 -39.65234 -38.35068 -37.48015 -36.87187 -35.82390 -35.77860 -33.86341
-32.25646 -31.18563 -29.51379 -27.81902 -26.86277 -24.13631 -23.45476 -23.23719
-21.98082 -20.03197 -19.62209 -19.04047 -18.30161 -17.67381 -17.32415 -17.03522
-16.31563 -16.23697 -15.97464 -15.80957 -15.41214 -15.30315 -15.03657 -14.58977
-14.33234 -13.98739 -13.94366 -13.42841 -13.36241 -13.23019 -13.16131 -13.14468
-12.97501 -12.82536 -12.73358 -12.65277 -12.33652 -12.18713 -12.01537 -12.00744
-11.81340 -11.44455 -11.37009 -11.26574 -11.03806 -9.99993 -9.80043 -9.50097
-8.96800 -6.76582 -0.50069 0.27387 0.78270 1.09891 1.35617 1.40623
1.54172 1.98448 2.09577 2.38915 2.77475 2.78912 3.30616 3.40057
3.74929 3.78887 4.05443 4.11629 4.17579 4.19843 4.36913 4.42979
4.63669 4.68090 4.72927 4.75408 4.85174 4.88497 4.91812 4.98080
4.98965 5.13852 5.18949 5.30831 5.33842 5.51072 5.58266 5.76025
5.92244 6.18720 6.33596 6.53902 6.59884 7.98460
Molecular weight = 345.06amu
Principal moments of inertia in cm(-1)
A = 0.017747 B = 0.003587 C = 0.003436
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1577.353004 B = 7803.445746 C = 8147.100950
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C 0.075 3.925
3 H 0.063 0.937
4 C 0.084 3.916
5 N -0.998 5.998
6 S 2.712 3.288
7 O -0.984 6.984
8 O -0.994 6.994
9 C -0.806 4.806
10 C -0.015 4.015
11 C -0.201 4.201
12 C 0.117 3.883
13 C -0.447 4.447
14 H 0.099 0.901
15 C 0.035 3.965
16 N -0.788 5.788
17 Si 0.995 3.005
18 H -0.251 1.251
19 H -0.260 1.260
20 H -0.262 1.262
21 C -0.240 4.240
22 C 0.086 3.914
23 Cl -0.075 7.075
24 C 0.078 3.922
25 C 0.053 3.947
26 O -0.384 6.384
27 H 0.075 0.925
28 H 0.088 0.912
29 H 0.068 0.932
30 H 0.100 0.900
31 H 0.082 0.918
32 H 0.125 0.875
33 H 0.120 0.880
34 H 0.303 0.697
35 H 0.121 0.879
36 H 0.080 0.920
37 H 0.096 0.904
38 H 0.132 0.868
39 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.198 1.733 9.901 12.363
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C 0.015 3.985
3 H 0.081 0.919
4 C -0.041 4.041
5 N -0.837 5.837
6 S 2.809 3.191
7 O -0.974 6.974
8 O -0.985 6.985
9 C -0.898 4.898
10 C -0.035 4.035
11 C -0.221 4.221
12 C 0.113 3.887
13 C -0.472 4.472
14 H 0.117 0.883
15 C -0.186 4.186
16 N -0.410 5.410
17 Si 0.814 3.186
18 H -0.174 1.174
19 H -0.184 1.184
20 H -0.187 1.187
21 C -0.261 4.261
22 C 0.057 3.943
23 Cl -0.046 7.046
24 C -0.047 4.047
25 C -0.026 4.026
26 O -0.303 6.303
27 H 0.094 0.906
28 H 0.107 0.893
29 H 0.087 0.913
30 H 0.118 0.882
31 H 0.100 0.900
32 H 0.143 0.857
33 H 0.138 0.862
34 H 0.114 0.886
35 H 0.139 0.861
36 H 0.099 0.901
37 H 0.114 0.886
38 H 0.149 0.851
39 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -6.839 2.630 9.854 12.280
hybrid contribution 0.501 -1.056 -1.103 1.607
sum -6.338 1.574 8.751 10.919
Atomic orbital electron populations
1.21756 0.90237 1.03765 1.03939 1.22473 0.96921 0.94929 0.84141
0.91888 1.22290 0.78413 1.02743 1.00675 1.57674 1.17154 1.79874
1.28955 1.00790 0.72527 0.73543 0.72245 1.93493 1.41426 1.84987
1.77542 1.93433 1.74237 1.59116 1.71667 1.29531 1.28836 1.19736
1.11738 1.20437 0.94379 0.97668 0.91002 1.21430 1.05279 0.95011
1.00355 1.18053 0.86372 0.93168 0.91134 1.20334 1.39573 0.95543
0.91792 0.88275 1.27083 0.90584 1.00697 1.00271 1.69837 1.28654
1.26361 1.16170 0.84941 0.79326 0.77108 0.77241 1.17391 1.18385
1.18694 1.21103 1.10585 0.98530 0.95889 1.20117 0.94774 0.94688
0.84676 1.98304 1.87338 1.98323 1.20666 1.22513 0.99815 0.98980
0.83436 1.23080 0.80739 1.00417 0.98328 1.87914 1.21341 1.77770
1.43301 0.90580 0.89288 0.91335 0.88190 0.89956 0.85744 0.86232
0.88582 0.86106 0.90125 0.88598 0.85050 0.92365
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.30 9.57 71.98 0.69 -1.61 16
2 C 0.07 1.68 3.39 30.55 0.10 1.79 16
3 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16
4 C 0.08 2.25 5.98 86.21 0.52 2.76 16
5 N -1.00 -31.57 3.34 -512.36 -1.71 -33.29 16
6 S 2.71 107.64 5.21 -56.49 -0.29 107.34 16
7 O -0.98 -42.17 15.15 -128.00 -1.94 -44.11 16
8 O -0.99 -41.90 15.56 -128.00 -1.99 -43.90 16
9 C -0.81 -36.06 5.93 22.48 0.13 -35.93 16
10 C -0.01 -0.69 9.52 22.21 0.21 -0.47 16
11 C -0.20 -9.96 8.70 22.73 0.20 -9.76 16
12 C 0.12 5.83 5.57 -21.29 -0.12 5.71 16
13 C -0.45 -21.13 9.05 23.46 0.21 -20.91 16
14 H 0.10 4.38 7.91 -2.91 -0.02 4.36 16
15 C 0.03 1.51 5.14 85.26 0.44 1.95 16
16 N -0.79 -36.43 10.95 21.83 0.24 -36.19 16
17 Si 1.00 32.46 29.60 68.60 2.03 34.49 16
18 H -0.25 -7.95 7.11 99.48 0.71 -7.24 16
19 H -0.26 -8.15 7.11 99.48 0.71 -7.45 16
20 H -0.26 -8.26 7.11 99.48 0.71 -7.56 16
21 C -0.24 -11.24 9.57 22.75 0.22 -11.02 16
22 C 0.09 3.80 6.29 22.27 0.14 3.94 16
23 Cl -0.08 -2.78 22.44 -2.72 -0.06 -2.84 16
24 C 0.08 2.14 4.77 86.35 0.41 2.55 16
25 C 0.05 1.16 6.98 72.08 0.50 1.66 16
26 O -0.38 -9.20 10.39 -148.98 -1.55 -10.75 16
27 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16
28 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16
29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16
30 H 0.10 2.69 6.94 -2.38 -0.02 2.68 16
31 H 0.08 2.08 8.13 -2.39 -0.02 2.06 16
32 H 0.12 5.42 7.31 -2.91 -0.02 5.40 16
33 H 0.12 5.99 6.15 -2.91 -0.02 5.98 16
34 H 0.30 12.31 8.30 -92.71 -0.77 11.54 16
35 H 0.12 5.24 8.06 -2.91 -0.02 5.21 16
36 H 0.08 2.13 7.78 -2.39 -0.02 2.11 16
37 H 0.10 2.80 5.21 -2.39 -0.01 2.79 16
38 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16
39 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16
Total: -1.00 -60.06 339.06 -0.54 -60.59
By element:
Atomic # 1 Polarization: 26.92 SS G_CDS: 1.08 Total: 28.00 kcal
Atomic # 6 Polarization: -63.01 SS G_CDS: 3.66 Total: -59.36 kcal
Atomic # 7 Polarization: -68.00 SS G_CDS: -1.47 Total: -69.47 kcal
Atomic # 8 Polarization: -93.28 SS G_CDS: -5.48 Total: -98.76 kcal
Atomic # 14 Polarization: 32.46 SS G_CDS: 2.03 Total: 34.49 kcal
Atomic # 16 Polarization: 107.64 SS G_CDS: -0.29 Total: 107.34 kcal
Atomic # 17 Polarization: -2.78 SS G_CDS: -0.06 Total: -2.84 kcal
Total: -60.06 -0.54 -60.59 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000451012370.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -64.952 kcal
(2) G-P(sol) polarization free energy of solvation -60.056 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.008 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.539 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.595 kcal
(6) G-S(sol) free energy of system = (1) + (5) -125.547 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds