Wall clock time and date at job start Wed Apr 1 2020 02:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.67984 * 2 1 4 4 C 1.53300 * 109.70829 * 120.52949 * 2 1 3 5 5 O 1.42961 * 109.22225 * 172.04457 * 4 2 1 6 6 C 1.42958 * 114.16536 * 297.42243 * 5 4 2 7 7 C 1.52878 * 109.30285 * 62.45064 * 6 5 4 8 8 N 1.47141 * 109.68404 * 239.47358 * 2 1 3 9 9 S 1.65603 * 120.98363 * 9.68877 * 8 2 1 10 10 O 1.42101 * 106.40190 * 166.91925 * 9 8 2 11 11 O 1.42093 * 106.40504 * 33.99465 * 9 8 2 12 12 C 1.76199 * 107.21311 * 280.45675 * 9 8 2 13 13 C 1.38638 * 119.75812 * 112.35613 * 12 9 8 14 14 C 1.37603 * 120.26665 * 179.97438 * 13 12 9 15 15 C 1.40740 * 119.76805 * 0.02562 * 14 13 12 16 16 C 1.41399 * 120.23624 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00449 * 207.45867 * 16 15 14 18 18 C 1.39944 * 119.99905 * 27.46247 * 16 15 14 19 19 N 1.30825 * 119.99780 * 11.24141 * 18 16 15 20 20 Si 1.86800 * 120.00200 * 191.24132 * 18 16 15 21 21 H 1.48502 * 109.46797 * 59.99806 * 20 18 16 22 22 H 1.48498 * 109.47026 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47019 * 300.00118 * 20 18 16 24 24 C 1.40677 * 119.52719 * 359.97438 * 15 14 13 25 25 C 1.37754 * 119.73204 * 0.02562 * 24 15 14 26 26 Cl 1.73603 * 119.89009 * 179.97438 * 25 24 15 27 27 H 1.08999 * 109.47150 * 168.54569 * 1 2 3 28 28 H 1.08997 * 109.47535 * 288.55169 * 1 2 3 29 29 H 1.09002 * 109.46480 * 48.55217 * 1 2 3 30 30 H 1.09004 * 109.51189 * 291.96870 * 4 2 1 31 31 H 1.09001 * 109.50963 * 52.06948 * 4 2 1 32 32 H 1.09005 * 109.51096 * 182.50580 * 6 5 4 33 33 H 1.08997 * 109.51545 * 302.59929 * 6 5 4 34 34 H 1.08994 * 109.61964 * 188.11784 * 7 6 5 35 35 H 1.08997 * 109.52565 * 67.69579 * 7 6 5 36 36 H 1.08003 * 119.86181 * 359.97438 * 13 12 9 37 37 H 1.08000 * 120.11373 * 179.72016 * 14 13 12 38 38 H 0.97002 * 120.00140 * 180.02562 * 19 18 16 39 39 H 1.08003 * 120.13262 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 6 2.0470 -0.7331 1.2431 5 8 3.4643 -0.8901 1.1415 6 6 3.8868 -1.6883 0.0333 7 6 3.4632 -1.0091 -1.2692 8 7 2.0256 -0.7037 -1.1934 9 16 0.9951 -1.1450 -2.4123 10 8 1.8121 -1.5094 -3.5163 11 8 -0.0002 -0.1333 -2.4823 12 6 0.1742 -2.6155 -1.8942 13 6 -1.1857 -2.5863 -1.6258 14 6 -1.8374 -3.7286 -1.2210 15 6 -1.1185 -4.9302 -1.0791 16 6 -1.7781 -6.1098 -0.6633 17 1 -1.2304 -6.8784 -0.1383 18 6 -3.1408 -6.2813 -0.9320 19 7 -3.7537 -5.4655 -1.7508 20 14 -4.0845 -7.6749 -0.1217 21 1 -4.0266 -7.5195 1.3540 22 1 -5.5005 -7.6388 -0.5677 23 1 -3.4766 -8.9739 -0.5069 24 6 0.2611 -4.9494 -1.3539 25 6 0.8933 -3.7941 -1.7578 26 17 2.5957 -3.8129 -2.0973 27 1 -0.3633 -1.0072 -0.2041 28 1 -0.3634 0.3269 0.9742 29 1 -0.3632 0.6803 -0.7703 30 1 1.8079 -0.1523 2.1340 31 1 1.5752 -1.7134 1.3101 32 1 4.9714 -1.7947 0.0538 33 1 3.4232 -2.6727 0.0959 34 1 3.6527 -1.6775 -2.1089 35 1 4.0282 -0.0861 -1.3992 36 1 -1.7356 -1.6632 -1.7348 37 1 -2.8959 -3.7021 -1.0082 38 1 -4.6983 -5.5841 -1.9368 39 1 0.8222 -5.8662 -1.2486 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451036999.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:56 Heat of formation + Delta-G solvation = -115.108690 kcal Electronic energy + Delta-G solvation = -27442.512140 eV Core-core repulsion = 23502.346432 eV Total energy + Delta-G solvation = -3940.165708 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.36953 -39.65520 -38.46345 -37.45967 -36.83951 -36.12259 -35.76618 -33.54153 -32.24422 -31.17165 -28.98017 -27.82427 -27.17955 -23.98672 -23.46571 -23.26531 -22.28720 -19.86809 -19.59389 -18.88698 -18.04810 -17.58091 -17.32415 -17.00205 -16.34865 -16.27845 -15.98009 -15.84162 -15.54020 -15.40869 -15.06196 -14.57862 -14.42237 -13.99348 -13.83515 -13.58243 -13.37785 -13.16175 -13.06232 -12.99667 -12.92160 -12.79613 -12.78207 -12.49076 -12.25326 -12.09794 -12.00755 -11.92248 -11.79379 -11.40588 -11.27236 -11.21245 -11.03705 -9.90767 -9.73261 -9.49087 -8.89081 -6.75817 -0.45071 0.28289 0.78819 1.11322 1.36974 1.43409 1.50822 2.00705 2.10642 2.43465 2.82547 2.89882 3.34130 3.45173 3.67522 3.80913 4.04730 4.16060 4.18860 4.22380 4.37381 4.55453 4.62696 4.64968 4.72459 4.76321 4.79724 4.89284 4.92008 5.00455 5.07858 5.13060 5.20029 5.32790 5.46674 5.57137 5.65205 5.78622 5.95344 6.14520 6.36572 6.57209 6.61763 8.03696 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.016012 B = 0.004257 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.319637 B = 6576.392799 C = 6705.021817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.126 3.874 3 H 0.103 0.897 4 C 0.051 3.949 5 O -0.384 6.384 6 C 0.045 3.955 7 C 0.079 3.921 8 N -0.996 5.996 9 S 2.712 3.288 10 O -0.990 6.990 11 O -0.987 6.987 12 C -0.797 4.797 13 C -0.010 4.010 14 C -0.193 4.193 15 C 0.118 3.882 16 C -0.451 4.451 17 H 0.097 0.903 18 C 0.033 3.967 19 N -0.797 5.797 20 Si 0.995 3.005 21 H -0.254 1.254 22 H -0.266 1.266 23 H -0.257 1.257 24 C -0.237 4.237 25 C 0.083 3.917 26 Cl -0.077 7.077 27 H 0.054 0.946 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.131 0.869 31 H 0.044 0.956 32 H 0.128 0.872 33 H 0.049 0.951 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.300 0.700 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.941 5.349 6.401 10.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C 0.021 3.979 3 H 0.120 0.880 4 C -0.027 4.027 5 O -0.302 6.302 6 C -0.033 4.033 7 C -0.046 4.046 8 N -0.836 5.836 9 S 2.808 3.192 10 O -0.981 6.981 11 O -0.978 6.978 12 C -0.889 4.889 13 C -0.030 4.030 14 C -0.214 4.214 15 C 0.114 3.886 16 C -0.477 4.477 17 H 0.115 0.885 18 C -0.186 4.186 19 N -0.420 5.420 20 Si 0.814 3.186 21 H -0.178 1.178 22 H -0.190 1.190 23 H -0.181 1.181 24 C -0.258 4.258 25 C 0.055 3.945 26 Cl -0.048 7.048 27 H 0.073 0.927 28 H 0.124 0.876 29 H 0.113 0.887 30 H 0.149 0.851 31 H 0.063 0.937 32 H 0.146 0.854 33 H 0.067 0.933 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.112 0.888 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.899 5.952 5.552 10.670 hybrid contribution -0.819 -1.444 0.064 1.662 sum 6.080 4.508 5.616 9.424 Atomic orbital electron populations 1.22852 0.93418 1.04232 1.06426 1.21761 0.94767 0.97040 0.84357 0.87955 1.23156 0.81197 1.00266 0.98049 1.87886 1.22328 1.72125 1.47900 1.23031 1.01874 0.93387 0.84999 1.22280 0.79747 1.02429 1.00136 1.57861 1.18061 1.71858 1.35844 1.00878 0.72244 0.73371 0.72664 1.93480 1.69213 1.84919 1.50484 1.93450 1.60355 1.57279 1.86677 1.29572 1.05690 1.16716 1.36928 1.20416 0.91204 0.98265 0.93102 1.21496 1.00494 0.91883 1.07478 1.18066 0.90867 0.93596 0.86033 1.20239 0.94984 1.02443 1.30055 0.88521 1.27029 0.98219 1.00236 0.93164 1.69811 1.13327 1.34803 1.24028 0.85023 0.76962 0.77102 0.79480 1.17781 1.18965 1.18066 1.21110 0.95807 0.96455 1.12397 1.20112 0.83015 0.94509 0.96822 1.98302 1.14452 1.98404 1.93609 0.92741 0.87587 0.88691 0.85114 0.93714 0.85374 0.93282 0.88906 0.88633 0.85532 0.86017 0.88813 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.86 7.78 71.98 0.56 -5.30 16 2 C 0.13 3.28 3.66 44.97 0.16 3.45 16 3 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 4 C 0.05 1.23 6.27 72.08 0.45 1.68 16 5 O -0.38 -9.72 10.74 -148.98 -1.60 -11.32 16 6 C 0.05 1.10 6.78 71.94 0.49 1.58 16 7 C 0.08 2.12 5.64 86.21 0.49 2.60 16 8 N -1.00 -30.90 3.34 -490.13 -1.63 -32.53 16 9 S 2.71 105.82 4.52 -56.49 -0.26 105.57 16 10 O -0.99 -42.46 14.87 -128.00 -1.90 -44.37 16 11 O -0.99 -40.24 13.21 -128.00 -1.69 -41.93 16 12 C -0.80 -34.43 5.14 22.48 0.12 -34.32 16 13 C -0.01 -0.44 7.70 22.22 0.17 -0.27 16 14 C -0.19 -9.33 8.66 22.73 0.20 -9.13 16 15 C 0.12 5.80 5.56 -21.29 -0.12 5.68 16 16 C -0.45 -21.12 9.07 23.46 0.21 -20.91 16 17 H 0.10 4.22 7.87 -2.91 -0.02 4.20 16 18 C 0.03 1.44 5.25 85.26 0.45 1.89 16 19 N -0.80 -36.76 10.78 21.83 0.24 -36.53 16 20 Si 1.00 32.61 29.57 68.60 2.03 34.64 16 21 H -0.25 -8.07 7.11 99.48 0.71 -7.36 16 22 H -0.27 -8.30 7.11 99.48 0.71 -7.59 16 23 H -0.26 -8.21 7.11 99.48 0.71 -7.51 16 24 C -0.24 -10.86 9.57 22.75 0.22 -10.64 16 25 C 0.08 3.62 6.29 22.27 0.14 3.76 16 26 Cl -0.08 -2.81 21.95 -2.72 -0.06 -2.87 16 27 H 0.05 1.78 4.23 -2.39 -0.01 1.77 16 28 H 0.11 2.20 8.11 -2.39 -0.02 2.18 16 29 H 0.09 2.90 5.97 -2.39 -0.01 2.89 16 30 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.13 2.34 8.14 -2.38 -0.02 2.32 16 33 H 0.05 1.34 6.75 -2.39 -0.02 1.32 16 34 H 0.09 2.70 4.99 -2.39 -0.01 2.69 16 35 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.13 5.29 7.15 -2.91 -0.02 5.26 16 37 H 0.12 5.99 6.15 -2.91 -0.02 5.97 16 38 H 0.30 12.37 8.30 -92.71 -0.77 11.60 16 39 H 0.12 5.09 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -58.36 325.96 -0.25 -58.61 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: 1.10 Total: 30.64 kcal Atomic # 6 Polarization: -63.46 SS G_CDS: 3.53 Total: -59.92 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -1.40 Total: -69.06 kcal Atomic # 8 Polarization: -92.42 SS G_CDS: -5.19 Total: -97.61 kcal Atomic # 14 Polarization: 32.61 SS G_CDS: 2.03 Total: 34.64 kcal Atomic # 16 Polarization: 105.82 SS G_CDS: -0.26 Total: 105.57 kcal Atomic # 17 Polarization: -2.81 SS G_CDS: -0.06 Total: -2.87 kcal Total: -58.36 -0.25 -58.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451036999.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.497 kcal (2) G-P(sol) polarization free energy of solvation -58.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds