Wall clock time and date at job start Wed Apr 1 2020 02:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.67521 * 2 1 4 4 C 1.53293 * 109.71285 * 239.46300 * 2 1 3 5 5 O 1.42965 * 109.22089 * 187.95584 * 4 2 1 6 6 C 1.42961 * 114.16783 * 62.57933 * 5 4 2 7 7 C 1.53714 * 109.14631 * 297.28855 * 6 5 4 8 8 N 1.47147 * 108.16131 * 52.53929 * 7 6 5 9 9 S 1.65597 * 120.98521 * 129.43188 * 8 7 6 10 10 O 1.42105 * 106.40044 * 349.15973 * 9 8 7 11 11 O 1.42102 * 106.40854 * 216.23919 * 9 8 7 12 12 C 1.76205 * 107.22086 * 102.69577 * 9 8 7 13 13 C 1.38635 * 119.75285 * 115.00454 * 12 9 8 14 14 C 1.37615 * 120.25809 * 180.02562 * 13 12 9 15 15 C 1.40737 * 119.76859 * 0.02562 * 14 13 12 16 16 C 1.41399 * 120.23258 * 180.02562 * 15 14 13 17 17 H 1.08007 * 120.00316 * 28.81693 * 16 15 14 18 18 C 1.39938 * 120.00032 * 208.82121 * 16 15 14 19 19 N 1.30828 * 120.00166 * 10.59768 * 18 16 15 20 20 Si 1.86800 * 120.00271 * 190.59595 * 18 16 15 21 21 H 1.48503 * 109.47176 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46998 * 119.99938 * 20 18 16 23 23 H 1.48493 * 109.47510 * 240.00116 * 20 18 16 24 24 C 1.40674 * 119.52809 * 0.02562 * 15 14 13 25 25 C 1.37752 * 119.73284 * 0.27644 * 24 15 14 26 26 Cl 1.73601 * 119.88676 * 179.70208 * 25 24 15 27 27 H 1.08993 * 109.47124 * 292.83405 * 1 2 3 28 28 H 1.08996 * 109.46982 * 52.83762 * 1 2 3 29 29 H 1.08997 * 109.46834 * 172.83093 * 1 2 3 30 30 H 1.09004 * 109.51325 * 307.87671 * 4 2 1 31 31 H 1.08996 * 109.51270 * 68.03244 * 4 2 1 32 32 H 1.09007 * 109.51106 * 57.34216 * 6 5 4 33 33 H 1.09000 * 109.51616 * 177.49260 * 6 5 4 34 34 H 1.08994 * 109.83613 * 292.85627 * 7 6 5 35 35 H 1.08998 * 109.74415 * 172.16210 * 7 6 5 36 36 H 1.07997 * 119.87092 * 0.02621 * 13 12 9 37 37 H 1.08000 * 120.10837 * 180.02562 * 14 13 12 38 38 H 0.97003 * 120.00317 * 180.02562 * 19 18 16 39 39 H 1.08003 * 120.12849 * 179.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8971 1.0264 0.0000 4 6 2.0471 -0.7332 -1.2429 5 8 3.4645 -0.8901 -1.1412 6 6 3.8870 -1.6882 -0.0328 7 6 3.4650 -0.9988 1.2746 8 7 2.0257 -0.7035 1.1936 9 16 0.9952 -1.1437 2.4129 10 8 1.7330 -2.0031 3.2711 11 8 -0.2232 -1.5267 1.7899 12 6 0.6417 0.3080 3.3468 13 6 -0.6498 0.8113 3.3736 14 6 -0.9374 1.9448 4.0991 15 6 0.0853 2.5941 4.8155 16 6 -0.1994 3.7590 5.5646 17 1 -1.1848 3.9055 5.9819 18 6 0.7956 4.7223 5.7654 19 7 1.9175 4.6534 5.0959 20 14 0.5220 6.1068 6.9893 21 1 -0.8181 5.9595 7.6118 22 1 1.5662 6.0488 8.0438 23 1 0.6009 7.4122 6.2859 24 6 1.3927 2.0759 4.7809 25 6 1.6595 0.9437 4.0430 26 17 3.2730 0.3052 3.9913 27 1 -0.3633 0.3988 0.9471 28 1 -0.3633 0.6208 -0.8189 29 1 -0.3633 -1.0196 -0.1282 30 1 1.5761 -1.7140 -1.3094 31 1 1.8081 -0.1526 -2.1339 32 1 3.4226 -2.6724 -0.0949 33 1 4.9716 -1.7946 -0.0532 34 1 4.0235 -0.0713 1.4007 35 1 3.6569 -1.6612 2.1187 36 1 -1.4332 0.3120 2.8229 37 1 -1.9444 2.3345 4.1186 38 1 2.6074 5.3209 5.2353 39 1 2.1849 2.5667 5.3267 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451037000.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:00 Heat of formation + Delta-G solvation = -98.771316 kcal Electronic energy + Delta-G solvation = -27158.420248 eV Core-core repulsion = 23218.962982 eV Total energy + Delta-G solvation = -3939.457266 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.25706 -37.91894 -36.88235 -35.69506 -35.26122 -34.90348 -34.11126 -32.33933 -30.35524 -29.53594 -27.79806 -26.28073 -25.91078 -22.89056 -21.81835 -21.39583 -21.17631 -18.42581 -17.88548 -17.08168 -16.83020 -16.41156 -15.82614 -15.67003 -15.10225 -14.85027 -14.62665 -14.49490 -14.19030 -13.77573 -13.41349 -12.86039 -12.74115 -12.59284 -12.54749 -12.43931 -11.93949 -11.69521 -11.63063 -11.50865 -11.45049 -11.30557 -11.23319 -11.15706 -10.72043 -10.58010 -10.47556 -10.45406 -10.32762 -10.11919 -9.90427 -9.67749 -9.53603 -8.56962 -8.08003 -7.76319 -7.22896 -4.98545 1.09784 1.98746 2.59771 2.80261 2.83673 2.89098 2.94793 3.44026 3.58117 3.85828 4.08248 4.41165 4.77242 4.84839 4.93922 5.11760 5.16783 5.26035 5.29695 5.44045 5.58856 5.62879 5.70655 5.84417 5.88769 6.02349 6.20415 6.28738 6.31330 6.52092 6.61392 6.63473 6.76237 6.89151 6.95818 7.12436 7.13136 7.29804 7.54557 7.72873 8.06071 8.32280 8.36781 9.66791 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.017529 B = 0.004052 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.946013 B = 6907.846223 C = 7167.502193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.124 3.876 3 H 0.081 0.919 4 C 0.056 3.944 5 O -0.381 6.381 6 C 0.051 3.949 7 C 0.086 3.914 8 N -0.998 5.998 9 S 2.696 3.304 10 O -0.970 6.970 11 O -0.979 6.979 12 C -0.788 4.788 13 C 0.006 3.994 14 C -0.232 4.232 15 C 0.143 3.857 16 C -0.426 4.426 17 H 0.093 0.907 18 C 0.068 3.932 19 N -0.767 5.767 20 Si 0.922 3.078 21 H -0.256 1.256 22 H -0.267 1.267 23 H -0.269 1.269 24 C -0.162 4.162 25 C 0.075 3.925 26 Cl -0.103 7.103 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.054 0.946 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.118 0.882 37 H 0.107 0.893 38 H 0.291 0.709 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.018 -4.135 -7.276 8.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.017 3.983 3 H 0.099 0.901 4 C -0.022 4.022 5 O -0.299 6.299 6 C -0.028 4.028 7 C -0.040 4.040 8 N -0.835 5.835 9 S 2.795 3.205 10 O -0.961 6.961 11 O -0.970 6.970 12 C -0.882 4.882 13 C -0.014 4.014 14 C -0.253 4.253 15 C 0.139 3.861 16 C -0.454 4.454 17 H 0.111 0.889 18 C -0.154 4.154 19 N -0.390 5.390 20 Si 0.745 3.255 21 H -0.179 1.179 22 H -0.192 1.192 23 H -0.194 1.194 24 C -0.183 4.183 25 C 0.047 3.953 26 Cl -0.074 7.074 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.120 0.880 32 H 0.072 0.928 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.122 0.878 36 H 0.136 0.864 37 H 0.126 0.874 38 H 0.102 0.898 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.227 -4.854 -7.313 9.055 hybrid contribution 0.066 1.449 0.921 1.718 sum 2.293 -3.406 -6.391 7.596 Atomic orbital electron populations 1.22615 0.92397 1.05153 1.03889 1.21590 0.95202 0.96569 0.84917 0.90097 1.23017 0.81495 1.00132 0.97559 1.87907 1.22103 1.72208 1.47698 1.23039 1.00340 0.93466 0.85933 1.22243 0.80990 1.01693 0.99069 1.57956 1.18374 1.74276 1.32928 1.01369 0.72322 0.74544 0.72276 1.93504 1.72565 1.64551 1.65439 1.93526 1.45025 1.82820 1.75616 1.29167 1.00596 1.29092 1.29392 1.20199 0.92698 0.93753 0.94789 1.21175 0.99383 0.99890 1.04809 1.17752 0.90608 0.90550 0.87178 1.20000 0.98615 1.01018 1.25727 0.88935 1.26175 0.93967 1.00024 0.95249 1.69771 1.05314 1.32467 1.31432 0.86004 0.80291 0.79266 0.79917 1.17918 1.19167 1.19376 1.21344 0.99016 0.94818 1.03152 1.20047 0.82345 0.94732 0.98190 1.98306 1.25309 1.86399 1.97391 0.90653 0.91338 0.88845 0.92576 0.88032 0.92810 0.88001 0.90558 0.87846 0.86399 0.87441 0.89756 0.84624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.66 7.61 37.16 0.28 -2.37 16 2 C 0.12 1.80 3.70 -67.42 -0.25 1.55 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.06 0.70 6.29 37.31 0.23 0.93 16 5 O -0.38 -5.17 10.74 -35.23 -0.38 -5.54 16 6 C 0.05 0.63 7.00 37.53 0.26 0.89 16 7 C 0.09 1.27 4.93 -3.32 -0.02 1.26 16 8 N -1.00 -16.54 3.24 -105.80 -0.34 -16.89 16 9 S 2.70 52.88 4.54 -107.50 -0.49 52.39 16 10 O -0.97 -20.84 14.89 -57.17 -0.85 -21.69 16 11 O -0.98 -19.45 12.49 -57.17 -0.71 -20.16 16 12 C -0.79 -17.15 5.56 -39.25 -0.22 -17.37 16 13 C 0.01 0.12 8.31 -39.66 -0.33 -0.21 16 14 C -0.23 -5.17 9.79 -38.87 -0.38 -5.55 16 15 C 0.14 3.46 5.55 -106.83 -0.59 2.87 16 16 C -0.43 -9.94 9.06 -37.74 -0.34 -10.28 16 17 H 0.09 2.02 7.87 -52.48 -0.41 1.61 16 18 C 0.07 1.49 5.26 -17.34 -0.09 1.40 16 19 N -0.77 -17.63 10.84 55.55 0.60 -17.02 16 20 Si 0.92 16.39 29.57 -169.99 -5.03 11.36 16 21 H -0.26 -4.49 7.11 56.52 0.40 -4.09 16 22 H -0.27 -4.71 7.11 56.52 0.40 -4.31 16 23 H -0.27 -4.72 7.11 56.52 0.40 -4.32 16 24 C -0.16 -3.95 8.43 -38.84 -0.33 -4.27 16 25 C 0.08 1.72 6.29 -39.58 -0.25 1.47 16 26 Cl -0.10 -2.08 23.73 -51.86 -1.23 -3.31 16 27 H 0.07 1.26 4.41 -51.93 -0.23 1.03 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.09 1.40 6.54 -51.93 -0.34 1.06 16 30 H 0.06 0.67 8.11 -51.93 -0.42 0.24 16 31 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 33 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.13 7.65 -51.93 -0.40 0.73 16 35 H 0.10 1.58 6.33 -51.93 -0.33 1.25 16 36 H 0.12 2.26 6.93 -52.49 -0.36 1.90 16 37 H 0.11 2.16 8.06 -52.49 -0.42 1.74 16 38 H 0.29 6.00 8.30 -40.82 -0.34 5.66 16 39 H 0.14 3.38 6.22 -52.48 -0.33 3.05 16 LS Contribution 330.27 15.07 4.98 4.98 Total: -1.00 -27.51 330.27 -9.96 -37.47 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -4.49 Total: 8.09 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: -2.02 Total: -29.68 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.26 Total: -33.91 kcal Atomic # 8 Polarization: -45.45 SS G_CDS: -1.94 Total: -47.39 kcal Atomic # 14 Polarization: 16.39 SS G_CDS: -5.03 Total: 11.36 kcal Atomic # 16 Polarization: 52.88 SS G_CDS: -0.49 Total: 52.39 kcal Atomic # 17 Polarization: -2.08 SS G_CDS: -1.23 Total: -3.31 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.51 -9.96 -37.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451037000.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.298 kcal (2) G-P(sol) polarization free energy of solvation -27.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds