Wall clock time and date at job start Wed Apr 1 2020 02:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.67521 * 2 1 4 4 C 1.53293 * 109.71285 * 239.46300 * 2 1 3 5 5 O 1.42965 * 109.22089 * 187.95584 * 4 2 1 6 6 C 1.42961 * 114.16783 * 62.57933 * 5 4 2 7 7 C 1.53714 * 109.14631 * 297.28855 * 6 5 4 8 8 N 1.47147 * 108.16131 * 52.53929 * 7 6 5 9 9 S 1.65597 * 120.98521 * 129.43188 * 8 7 6 10 10 O 1.42105 * 106.40044 * 349.15973 * 9 8 7 11 11 O 1.42102 * 106.40854 * 216.23919 * 9 8 7 12 12 C 1.76205 * 107.22086 * 102.69577 * 9 8 7 13 13 C 1.38635 * 119.75285 * 115.00454 * 12 9 8 14 14 C 1.37615 * 120.25809 * 180.02562 * 13 12 9 15 15 C 1.40737 * 119.76859 * 0.02562 * 14 13 12 16 16 C 1.41399 * 120.23258 * 180.02562 * 15 14 13 17 17 H 1.08007 * 120.00316 * 28.81693 * 16 15 14 18 18 C 1.39938 * 120.00032 * 208.82121 * 16 15 14 19 19 N 1.30828 * 120.00166 * 10.59768 * 18 16 15 20 20 Si 1.86800 * 120.00271 * 190.59595 * 18 16 15 21 21 H 1.48503 * 109.47176 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46998 * 119.99938 * 20 18 16 23 23 H 1.48493 * 109.47510 * 240.00116 * 20 18 16 24 24 C 1.40674 * 119.52809 * 0.02562 * 15 14 13 25 25 C 1.37752 * 119.73284 * 0.27644 * 24 15 14 26 26 Cl 1.73601 * 119.88676 * 179.70208 * 25 24 15 27 27 H 1.08993 * 109.47124 * 292.83405 * 1 2 3 28 28 H 1.08996 * 109.46982 * 52.83762 * 1 2 3 29 29 H 1.08997 * 109.46834 * 172.83093 * 1 2 3 30 30 H 1.09004 * 109.51325 * 307.87671 * 4 2 1 31 31 H 1.08996 * 109.51270 * 68.03244 * 4 2 1 32 32 H 1.09007 * 109.51106 * 57.34216 * 6 5 4 33 33 H 1.09000 * 109.51616 * 177.49260 * 6 5 4 34 34 H 1.08994 * 109.83613 * 292.85627 * 7 6 5 35 35 H 1.08998 * 109.74415 * 172.16210 * 7 6 5 36 36 H 1.07997 * 119.87092 * 0.02621 * 13 12 9 37 37 H 1.08000 * 120.10837 * 180.02562 * 14 13 12 38 38 H 0.97003 * 120.00317 * 180.02562 * 19 18 16 39 39 H 1.08003 * 120.12849 * 179.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8971 1.0264 0.0000 4 6 2.0471 -0.7332 -1.2429 5 8 3.4645 -0.8901 -1.1412 6 6 3.8870 -1.6882 -0.0328 7 6 3.4650 -0.9988 1.2746 8 7 2.0257 -0.7035 1.1936 9 16 0.9952 -1.1437 2.4129 10 8 1.7330 -2.0031 3.2711 11 8 -0.2232 -1.5267 1.7899 12 6 0.6417 0.3080 3.3468 13 6 -0.6498 0.8113 3.3736 14 6 -0.9374 1.9448 4.0991 15 6 0.0853 2.5941 4.8155 16 6 -0.1994 3.7590 5.5646 17 1 -1.1848 3.9055 5.9819 18 6 0.7956 4.7223 5.7654 19 7 1.9175 4.6534 5.0959 20 14 0.5220 6.1068 6.9893 21 1 -0.8181 5.9595 7.6118 22 1 1.5662 6.0488 8.0438 23 1 0.6009 7.4122 6.2859 24 6 1.3927 2.0759 4.7809 25 6 1.6595 0.9437 4.0430 26 17 3.2730 0.3052 3.9913 27 1 -0.3633 0.3988 0.9471 28 1 -0.3633 0.6208 -0.8189 29 1 -0.3633 -1.0196 -0.1282 30 1 1.5761 -1.7140 -1.3094 31 1 1.8081 -0.1526 -2.1339 32 1 3.4226 -2.6724 -0.0949 33 1 4.9716 -1.7946 -0.0532 34 1 4.0235 -0.0713 1.4007 35 1 3.6569 -1.6612 2.1187 36 1 -1.4332 0.3120 2.8229 37 1 -1.9444 2.3345 4.1186 38 1 2.6074 5.3209 5.2353 39 1 2.1849 2.5667 5.3267 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451037000.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:59 Heat of formation + Delta-G solvation = -115.661729 kcal Electronic energy + Delta-G solvation = -27159.152671 eV Core-core repulsion = 23218.962982 eV Total energy + Delta-G solvation = -3940.189689 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.34350 -39.64512 -38.45321 -37.38273 -36.84038 -36.12307 -35.80217 -33.47926 -32.08253 -31.28317 -28.94241 -27.82884 -27.16328 -24.01143 -23.53309 -23.12251 -22.36779 -19.91306 -19.60940 -18.57081 -18.25272 -17.70477 -17.27239 -16.95476 -16.34951 -16.22385 -15.98292 -15.84364 -15.52489 -15.38148 -14.99457 -14.53792 -14.24556 -14.09152 -13.98655 -13.73912 -13.29615 -13.25821 -13.08547 -12.98813 -12.79906 -12.76848 -12.61473 -12.41886 -12.24045 -12.04540 -11.98941 -11.89367 -11.83997 -11.44865 -11.34401 -11.22185 -11.03080 -9.91528 -9.71574 -9.51283 -8.89008 -6.75502 -0.43261 0.26920 0.82075 1.20105 1.36160 1.39970 1.52975 2.00676 2.09680 2.42155 2.83232 2.90497 3.33122 3.47555 3.67091 3.76314 4.06978 4.13703 4.18650 4.21296 4.35476 4.59768 4.61638 4.67314 4.70219 4.76953 4.80665 4.88585 4.90878 5.04853 5.05237 5.14018 5.20861 5.37869 5.45169 5.50994 5.64071 5.79881 5.98395 6.15175 6.30928 6.57862 6.61478 8.04194 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.017529 B = 0.004052 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.946013 B = 6907.846223 C = 7167.502193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.117 3.883 3 H 0.077 0.923 4 C 0.058 3.942 5 O -0.389 6.389 6 C 0.054 3.946 7 C 0.078 3.922 8 N -0.995 5.995 9 S 2.713 3.287 10 O -0.991 6.991 11 O -0.981 6.981 12 C -0.801 4.801 13 C 0.005 3.995 14 C -0.245 4.245 15 C 0.117 3.883 16 C -0.453 4.453 17 H 0.100 0.900 18 C 0.032 3.968 19 N -0.799 5.799 20 Si 0.994 3.006 21 H -0.251 1.251 22 H -0.264 1.264 23 H -0.262 1.262 24 C -0.187 4.187 25 C 0.066 3.934 26 Cl -0.085 7.085 27 H 0.051 0.949 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.130 0.870 32 H 0.063 0.937 33 H 0.130 0.870 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.138 0.862 37 H 0.124 0.876 38 H 0.299 0.701 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.069 -4.080 -8.523 9.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.012 3.988 3 H 0.095 0.905 4 C -0.020 4.020 5 O -0.307 6.307 6 C -0.025 4.025 7 C -0.047 4.047 8 N -0.835 5.835 9 S 2.809 3.191 10 O -0.982 6.982 11 O -0.972 6.972 12 C -0.893 4.893 13 C -0.015 4.015 14 C -0.265 4.265 15 C 0.113 3.887 16 C -0.479 4.479 17 H 0.118 0.882 18 C -0.187 4.187 19 N -0.422 5.422 20 Si 0.813 3.187 21 H -0.174 1.174 22 H -0.188 1.188 23 H -0.186 1.186 24 C -0.208 4.208 25 C 0.037 3.963 26 Cl -0.056 7.056 27 H 0.070 0.930 28 H 0.117 0.883 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.148 0.852 32 H 0.081 0.919 33 H 0.147 0.853 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.156 0.844 37 H 0.142 0.858 38 H 0.110 0.890 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.267 -4.795 -8.550 10.062 hybrid contribution 0.103 1.351 1.208 1.815 sum 2.369 -3.444 -7.342 8.449 Atomic orbital electron populations 1.22608 0.92362 1.05377 1.03825 1.21831 0.95344 0.96629 0.85041 0.90476 1.23137 0.80961 1.00716 0.97151 1.87907 1.22683 1.72398 1.47757 1.23150 1.02089 0.93208 0.84022 1.22437 0.79829 1.01807 1.00656 1.57790 1.18873 1.74374 1.32469 1.00896 0.72388 0.73600 0.72192 1.93470 1.73026 1.64998 1.66666 1.93526 1.45614 1.82648 1.75420 1.29649 1.00563 1.29519 1.29547 1.20469 0.93182 0.93481 0.94341 1.21417 0.99864 1.00403 1.04816 1.18104 0.91098 0.91443 0.88058 1.20303 0.99605 1.01458 1.26581 0.88232 1.27036 0.93261 1.02024 0.96420 1.69816 1.06196 1.33619 1.32544 0.84950 0.80246 0.76093 0.77367 1.17413 1.18846 1.18635 1.21311 0.99080 0.95892 1.04480 1.20229 0.83609 0.94546 0.97872 1.98297 1.23990 1.86032 1.97323 0.93048 0.88268 0.89233 0.91800 0.85200 0.91900 0.85264 0.90876 0.88540 0.84403 0.85841 0.88958 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.02 7.61 71.98 0.55 -4.47 16 2 C 0.12 3.21 3.70 44.97 0.17 3.38 16 3 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 4 C 0.06 1.27 6.29 72.08 0.45 1.73 16 5 O -0.39 -9.42 10.74 -148.98 -1.60 -11.02 16 6 C 0.05 1.19 7.00 72.22 0.51 1.70 16 7 C 0.08 2.22 4.93 86.50 0.43 2.65 16 8 N -1.00 -31.92 3.24 -488.63 -1.58 -33.50 16 9 S 2.71 105.11 4.54 -56.49 -0.26 104.86 16 10 O -0.99 -42.34 14.89 -128.00 -1.91 -44.25 16 11 O -0.98 -38.07 12.49 -128.00 -1.60 -39.67 16 12 C -0.80 -35.15 5.56 22.48 0.13 -35.02 16 13 C 0.01 0.22 8.31 22.22 0.18 0.40 16 14 C -0.24 -11.08 9.79 22.73 0.22 -10.86 16 15 C 0.12 5.82 5.55 -21.30 -0.12 5.70 16 16 C -0.45 -21.51 9.06 23.46 0.21 -21.30 16 17 H 0.10 4.41 7.87 -2.91 -0.02 4.38 16 18 C 0.03 1.41 5.26 85.25 0.45 1.86 16 19 N -0.80 -37.44 10.84 21.82 0.24 -37.20 16 20 Si 0.99 33.29 29.57 68.60 2.03 35.32 16 21 H -0.25 -8.13 7.11 99.48 0.71 -7.42 16 22 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 23 H -0.26 -8.42 7.11 99.48 0.71 -7.71 16 24 C -0.19 -9.39 8.43 22.75 0.19 -9.20 16 25 C 0.07 3.06 6.29 22.27 0.14 3.20 16 26 Cl -0.09 -3.48 23.73 -2.72 -0.06 -3.55 16 27 H 0.05 1.66 4.41 -2.39 -0.01 1.65 16 28 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.09 2.52 6.54 -2.39 -0.02 2.50 16 30 H 0.06 1.31 8.11 -2.38 -0.02 1.29 16 31 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.07 2.11 7.65 -2.39 -0.02 2.09 16 35 H 0.10 2.88 6.33 -2.39 -0.02 2.86 16 36 H 0.14 5.22 6.93 -2.91 -0.02 5.20 16 37 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 38 H 0.30 12.50 8.30 -92.71 -0.77 11.74 16 39 H 0.12 6.32 6.22 -2.91 -0.02 6.31 16 Total: -1.00 -59.51 330.27 -0.15 -59.66 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: 1.09 Total: 29.60 kcal Atomic # 6 Polarization: -63.75 SS G_CDS: 3.51 Total: -60.25 kcal Atomic # 7 Polarization: -69.36 SS G_CDS: -1.35 Total: -70.71 kcal Atomic # 8 Polarization: -89.83 SS G_CDS: -5.10 Total: -94.93 kcal Atomic # 14 Polarization: 33.29 SS G_CDS: 2.03 Total: 35.32 kcal Atomic # 16 Polarization: 105.11 SS G_CDS: -0.26 Total: 104.86 kcal Atomic # 17 Polarization: -3.48 SS G_CDS: -0.06 Total: -3.55 kcal Total: -59.51 -0.15 -59.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451037000.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.003 kcal (2) G-P(sol) polarization free energy of solvation -59.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds