Wall clock time and date at job start Wed Apr 1 2020 02:57:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08995 * 110.67191 * 2 1
4 4 O 1.44380 * 110.61950 * 237.03256 * 2 1 3
5 5 C 1.43742 * 106.97422 * 201.43674 * 4 2 1
6 6 C 1.54099 * 107.29380 * 26.51840 * 5 4 2
7 7 C 1.54814 * 104.30621 * 357.89985 * 6 5 4
8 8 H 1.08997 * 110.90915 * 220.99037 * 7 6 5
9 9 N 1.46498 * 110.90641 * 97.38278 * 7 6 5
10 10 S 1.65608 * 119.99775 * 96.30661 * 9 7 6
11 11 O 1.42098 * 106.40277 * 48.08121 * 10 9 7
12 12 O 1.42096 * 106.40236 * 181.00843 * 10 9 7
13 13 C 1.76204 * 107.21461 * 294.54376 * 10 9 7
14 14 C 1.38639 * 119.75135 * 115.37940 * 13 10 9
15 15 C 1.37606 * 120.25916 * 179.97438 * 14 13 10
16 16 C 1.40739 * 119.76959 * 0.02809 * 15 14 13
17 17 C 1.41404 * 120.23865 * 179.97438 * 16 15 14
18 18 H 1.07995 * 120.00362 * 208.52356 * 17 16 15
19 19 C 1.39946 * 119.99771 * 28.51853 * 17 16 15
20 20 N 1.30822 * 120.00030 * 11.55633 * 19 17 16
21 21 Si 1.86801 * 119.99953 * 191.56098 * 19 17 16
22 22 H 1.48506 * 109.46908 * 359.97438 * 21 19 17
23 23 H 1.48497 * 109.47410 * 119.99959 * 21 19 17
24 24 H 1.48504 * 109.46841 * 240.00082 * 21 19 17
25 25 C 1.40676 * 119.52830 * 359.97438 * 16 15 14
26 26 C 1.37754 * 119.72917 * 359.72376 * 25 16 15
27 27 Cl 1.73605 * 119.88702 * 180.27537 * 26 25 16
28 28 H 1.08998 * 109.47281 * 181.50970 * 1 2 3
29 29 H 1.08996 * 109.46934 * 301.51072 * 1 2 3
30 30 H 1.09006 * 109.46773 * 61.51052 * 1 2 3
31 31 H 1.08994 * 109.87929 * 267.08853 * 5 4 2
32 32 H 1.09000 * 109.87576 * 145.93839 * 5 4 2
33 33 H 1.09001 * 110.48929 * 116.64042 * 6 5 4
34 34 H 1.08999 * 110.48925 * 239.15928 * 6 5 4
35 35 H 0.96995 * 120.00175 * 276.30121 * 9 7 6
36 36 H 1.08002 * 119.87548 * 359.97438 * 14 13 10
37 37 H 1.07997 * 120.11574 * 179.97438 * 15 14 13
38 38 H 0.96996 * 120.00121 * 179.97438 * 20 19 17
39 39 H 1.08003 * 120.13692 * 180.02562 * 25 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.9148 1.0198 0.0000
4 8 2.0385 -0.7353 -1.1337
5 6 3.3840 -1.1254 -0.8117
6 6 3.4795 -1.2167 0.7236
7 6 2.0772 -0.7881 1.2203
8 1 2.1548 -0.1460 2.0976
9 7 1.2426 -1.9583 1.5033
10 16 1.1252 -2.5369 3.0505
11 8 0.8634 -1.4134 3.8802
12 8 0.2747 -3.6737 2.9904
13 6 2.7195 -3.1320 3.5072
14 6 3.4153 -2.5156 4.5359
15 6 4.6609 -2.9720 4.9015
16 6 5.2291 -4.0687 4.2267
17 6 6.5086 -4.5455 4.5939
18 1 7.1360 -5.0288 3.8596
19 6 6.9620 -4.3912 5.9088
20 7 6.1313 -4.0169 6.8475
21 14 8.7536 -4.7194 6.3236
22 1 9.4796 -5.1274 5.0940
23 1 9.3681 -3.4854 6.8755
24 1 8.8371 -5.8072 7.3311
25 6 4.5149 -4.6870 3.1843
26 6 3.2668 -4.2176 2.8390
27 17 2.3789 -4.9821 1.5580
28 1 -0.3634 -1.0273 0.0271
29 1 -0.3633 0.5371 0.8761
30 1 -0.3633 0.4902 -0.9033
31 1 4.0854 -0.3782 -1.1830
32 1 3.6045 -2.0964 -1.2552
33 1 3.6974 -2.2392 1.0322
34 1 4.2422 -0.5349 1.0996
35 1 0.7588 -2.3942 0.7844
36 1 2.9780 -1.6739 5.0524
37 1 5.2010 -2.4899 5.7029
38 1 6.4454 -3.9103 7.7590
39 1 4.9415 -5.5295 2.6601
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000451361808.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:57:10
Heat of formation + Delta-G solvation = -117.583189 kcal
Electronic energy + Delta-G solvation = -26754.843825 eV
Core-core repulsion = 22814.570816 eV
Total energy + Delta-G solvation = -3940.273010 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 345.063 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-39.66665 -37.92990 -36.56304 -35.78034 -35.16826 -34.51137 -34.06036 -31.51159
-30.48971 -30.04431 -29.41297 -26.05835 -25.68132 -21.80336 -21.67926 -21.48901
-20.87520 -19.16642 -17.86765 -17.50993 -16.83364 -16.36970 -15.73873 -15.60717
-15.28521 -14.88592 -14.64113 -14.52951 -13.86565 -13.45423 -13.40531 -12.90910
-12.78756 -12.44430 -12.37586 -12.24985 -12.21782 -11.76677 -11.58327 -11.53334
-11.43526 -11.37392 -11.25338 -11.18517 -11.08006 -10.69938 -10.64125 -10.52576
-10.47670 -10.09672 -9.85364 -9.67252 -9.62007 -9.08659 -8.15950 -7.75206
-7.24586 -4.99361 1.15568 1.98687 2.55453 2.79758 2.80543 2.85057
2.88952 3.56257 3.60781 3.83843 4.08504 4.40428 4.62926 4.67281
5.01030 5.07869 5.10782 5.17676 5.29849 5.35790 5.47533 5.61170
5.71420 5.84166 5.88698 5.92264 6.10925 6.18802 6.33883 6.47419
6.50939 6.62501 6.71122 6.91120 6.92706 7.08109 7.28946 7.36385
7.53572 7.70911 8.11830 8.31046 8.37555 9.66032
Molecular weight = 345.06amu
Principal moments of inertia in cm(-1)
A = 0.015588 B = 0.003927 C = 0.003752
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1795.814093 B = 7128.299997 C = 7460.109114
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.071 3.929
3 H 0.080 0.920
4 O -0.375 6.375
5 C 0.052 3.948
6 C -0.178 4.178
7 C 0.128 3.872
8 H 0.110 0.890
9 N -1.107 6.107
10 S 2.696 3.304
11 O -0.983 6.983
12 O -0.968 6.968
13 C -0.786 4.786
14 C -0.009 4.009
15 C -0.175 4.175
16 C 0.145 3.855
17 C -0.427 4.427
18 H 0.091 0.909
19 C 0.069 3.931
20 N -0.766 5.766
21 Si 0.922 3.078
22 H -0.256 1.256
23 H -0.267 1.267
24 H -0.269 1.269
25 C -0.221 4.221
26 C 0.090 3.910
27 Cl -0.100 7.100
28 H 0.066 0.934
29 H 0.074 0.926
30 H 0.062 0.938
31 H 0.056 0.944
32 H 0.083 0.917
33 H 0.095 0.905
34 H 0.084 0.916
35 H 0.414 0.586
36 H 0.116 0.884
37 H 0.129 0.871
38 H 0.291 0.709
39 H 0.111 0.889
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.721 6.363 -8.403 10.680
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C 0.012 3.988
3 H 0.098 0.902
4 O -0.294 6.294
5 C -0.025 4.025
6 C -0.218 4.218
7 C 0.019 3.981
8 H 0.128 0.872
9 N -0.864 5.864
10 S 2.791 3.209
11 O -0.973 6.973
12 O -0.959 6.959
13 C -0.880 4.880
14 C -0.030 4.030
15 C -0.195 4.195
16 C 0.141 3.859
17 C -0.455 4.455
18 H 0.109 0.891
19 C -0.153 4.153
20 N -0.388 5.388
21 Si 0.745 3.255
22 H -0.179 1.179
23 H -0.192 1.192
24 H -0.194 1.194
25 C -0.242 4.242
26 C 0.062 3.938
27 Cl -0.072 7.072
28 H 0.085 0.915
29 H 0.093 0.907
30 H 0.081 0.919
31 H 0.074 0.926
32 H 0.101 0.899
33 H 0.114 0.886
34 H 0.103 0.897
35 H 0.249 0.751
36 H 0.134 0.866
37 H 0.146 0.854
38 H 0.102 0.898
39 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges -2.636 6.386 -7.796 10.417
hybrid contribution 1.511 -0.688 0.039 1.661
sum -1.124 5.698 -7.757 9.690
Atomic orbital electron populations
1.21743 0.92899 1.03277 1.02410 1.23379 0.95661 0.95108 0.84647
0.90241 1.88871 1.28170 1.73598 1.38785 1.23101 0.84090 1.00246
0.95093 1.23551 0.97572 1.05069 0.95591 1.22182 0.89350 0.87078
0.99483 0.87226 1.55649 1.61339 1.40899 1.28494 1.01298 0.74611
0.73090 0.71856 1.93479 1.84963 1.52871 1.66031 1.93560 1.65690
1.50879 1.85726 1.29115 1.27008 1.14879 1.17036 1.20301 0.94034
0.96315 0.92318 1.21448 0.96024 0.98385 1.03642 1.17742 0.91659
0.88373 0.88136 1.19978 0.99682 1.30432 0.95369 0.89136 1.26149
1.00677 0.92461 0.96015 1.69782 1.36404 1.29865 1.02778 0.86012
0.80415 0.79269 0.79813 1.17942 1.19171 1.19387 1.20987 0.94186
1.03722 1.05276 1.19975 0.92346 0.92422 0.89032 1.98333 1.75893
1.81876 1.51079 0.91509 0.90733 0.91919 0.92585 0.89888 0.88604
0.89723 0.75107 0.86603 0.85362 0.89763 0.87067
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.53 9.34 37.16 0.35 -1.19 16
2 C 0.07 0.81 3.84 -25.55 -0.10 0.71 16
3 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16
4 O -0.37 -4.83 11.23 -35.23 -0.40 -5.23 16
5 C 0.05 0.61 7.70 37.73 0.29 0.90 16
6 C -0.18 -2.30 6.75 -25.20 -0.17 -2.47 16
7 C 0.13 1.68 3.53 -65.80 -0.23 1.45 16
8 H 0.11 1.42 7.60 -51.93 -0.39 1.02 16
9 N -1.11 -16.49 4.58 -3.08 -0.01 -16.51 16
10 S 2.70 51.23 5.05 -107.50 -0.54 50.69 16
11 O -0.98 -20.14 16.32 -57.17 -0.93 -21.07 16
12 O -0.97 -20.67 16.47 -57.17 -0.94 -21.61 16
13 C -0.79 -16.44 5.59 -39.25 -0.22 -16.66 16
14 C -0.01 -0.20 9.52 -39.66 -0.38 -0.58 16
15 C -0.17 -4.04 8.66 -38.87 -0.34 -4.38 16
16 C 0.15 3.41 5.55 -106.83 -0.59 2.82 16
17 C -0.43 -9.78 9.06 -37.74 -0.34 -10.12 16
18 H 0.09 1.95 7.87 -52.49 -0.41 1.54 16
19 C 0.07 1.50 5.24 -17.34 -0.09 1.41 16
20 N -0.77 -17.37 10.87 55.55 0.60 -16.77 16
21 Si 0.92 16.12 29.57 -169.99 -5.03 11.09 16
22 H -0.26 -4.43 7.11 56.52 0.40 -4.03 16
23 H -0.27 -4.60 7.11 56.52 0.40 -4.19 16
24 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16
25 C -0.22 -4.89 9.57 -38.84 -0.37 -5.26 16
26 C 0.09 1.90 5.53 -39.58 -0.22 1.68 16
27 Cl -0.10 -1.89 26.41 -51.86 -1.37 -3.26 16
28 H 0.07 0.73 6.49 -51.93 -0.34 0.40 16
29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16
31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16
33 H 0.10 1.44 6.94 -51.93 -0.36 1.08 16
34 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16
35 H 0.41 5.69 7.54 -34.48 -0.26 5.43 16
36 H 0.12 2.36 7.31 -52.49 -0.38 1.97 16
37 H 0.13 3.01 6.23 -52.49 -0.33 2.69 16
38 H 0.29 5.91 8.30 -40.82 -0.34 5.57 16
39 H 0.11 2.32 8.06 -52.48 -0.42 1.90 16
LS Contribution 346.88 15.07 5.23 5.23
Total: -1.00 -27.61 346.88 -10.38 -37.98
By element:
Atomic # 1 Polarization: 15.72 SS G_CDS: -4.57 Total: 11.15 kcal
Atomic # 6 Polarization: -29.28 SS G_CDS: -2.41 Total: -31.69 kcal
Atomic # 7 Polarization: -33.86 SS G_CDS: 0.59 Total: -33.27 kcal
Atomic # 8 Polarization: -45.64 SS G_CDS: -2.27 Total: -47.91 kcal
Atomic # 14 Polarization: 16.12 SS G_CDS: -5.03 Total: 11.09 kcal
Atomic # 16 Polarization: 51.23 SS G_CDS: -0.54 Total: 50.69 kcal
Atomic # 17 Polarization: -1.89 SS G_CDS: -1.37 Total: -3.26 kcal
Total LS contribution 5.23 Total: 5.23 kcal
Total: -27.61 -10.38 -37.98 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000451361808.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -79.600 kcal
(2) G-P(sol) polarization free energy of solvation -27.608 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.208 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.375 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.983 kcal
(6) G-S(sol) free energy of system = (1) + (5) -117.583 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds