Wall clock time and date at job start Wed Apr 1 2020 02:57:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08995 * 110.67191 * 2 1
4 4 O 1.44380 * 110.61950 * 237.03256 * 2 1 3
5 5 C 1.43742 * 106.97422 * 201.43674 * 4 2 1
6 6 C 1.54099 * 107.29380 * 26.51840 * 5 4 2
7 7 C 1.54814 * 104.30621 * 357.89985 * 6 5 4
8 8 H 1.08997 * 110.90915 * 220.99037 * 7 6 5
9 9 N 1.46498 * 110.90641 * 97.38278 * 7 6 5
10 10 S 1.65608 * 119.99775 * 96.30661 * 9 7 6
11 11 O 1.42098 * 106.40277 * 48.08121 * 10 9 7
12 12 O 1.42096 * 106.40236 * 181.00843 * 10 9 7
13 13 C 1.76204 * 107.21461 * 294.54376 * 10 9 7
14 14 C 1.38639 * 119.75135 * 115.37940 * 13 10 9
15 15 C 1.37606 * 120.25916 * 179.97438 * 14 13 10
16 16 C 1.40739 * 119.76959 * 0.02809 * 15 14 13
17 17 C 1.41404 * 120.23865 * 179.97438 * 16 15 14
18 18 H 1.07995 * 120.00362 * 208.52356 * 17 16 15
19 19 C 1.39946 * 119.99771 * 28.51853 * 17 16 15
20 20 N 1.30822 * 120.00030 * 11.55633 * 19 17 16
21 21 Si 1.86801 * 119.99953 * 191.56098 * 19 17 16
22 22 H 1.48506 * 109.46908 * 359.97438 * 21 19 17
23 23 H 1.48497 * 109.47410 * 119.99959 * 21 19 17
24 24 H 1.48504 * 109.46841 * 240.00082 * 21 19 17
25 25 C 1.40676 * 119.52830 * 359.97438 * 16 15 14
26 26 C 1.37754 * 119.72917 * 359.72376 * 25 16 15
27 27 Cl 1.73605 * 119.88702 * 180.27537 * 26 25 16
28 28 H 1.08998 * 109.47281 * 181.50970 * 1 2 3
29 29 H 1.08996 * 109.46934 * 301.51072 * 1 2 3
30 30 H 1.09006 * 109.46773 * 61.51052 * 1 2 3
31 31 H 1.08994 * 109.87929 * 267.08853 * 5 4 2
32 32 H 1.09000 * 109.87576 * 145.93839 * 5 4 2
33 33 H 1.09001 * 110.48929 * 116.64042 * 6 5 4
34 34 H 1.08999 * 110.48925 * 239.15928 * 6 5 4
35 35 H 0.96995 * 120.00175 * 276.30121 * 9 7 6
36 36 H 1.08002 * 119.87548 * 359.97438 * 14 13 10
37 37 H 1.07997 * 120.11574 * 179.97438 * 15 14 13
38 38 H 0.96996 * 120.00121 * 179.97438 * 20 19 17
39 39 H 1.08003 * 120.13692 * 180.02562 * 25 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.9148 1.0198 0.0000
4 8 2.0385 -0.7353 -1.1337
5 6 3.3840 -1.1254 -0.8117
6 6 3.4795 -1.2167 0.7236
7 6 2.0772 -0.7881 1.2203
8 1 2.1548 -0.1460 2.0976
9 7 1.2426 -1.9583 1.5033
10 16 1.1252 -2.5369 3.0505
11 8 0.8634 -1.4134 3.8802
12 8 0.2747 -3.6737 2.9904
13 6 2.7195 -3.1320 3.5072
14 6 3.4153 -2.5156 4.5359
15 6 4.6609 -2.9720 4.9015
16 6 5.2291 -4.0687 4.2267
17 6 6.5086 -4.5455 4.5939
18 1 7.1360 -5.0288 3.8596
19 6 6.9620 -4.3912 5.9088
20 7 6.1313 -4.0169 6.8475
21 14 8.7536 -4.7194 6.3236
22 1 9.4796 -5.1274 5.0940
23 1 9.3681 -3.4854 6.8755
24 1 8.8371 -5.8072 7.3311
25 6 4.5149 -4.6870 3.1843
26 6 3.2668 -4.2176 2.8390
27 17 2.3789 -4.9821 1.5580
28 1 -0.3634 -1.0273 0.0271
29 1 -0.3633 0.5371 0.8761
30 1 -0.3633 0.4902 -0.9033
31 1 4.0854 -0.3782 -1.1830
32 1 3.6045 -2.0964 -1.2552
33 1 3.6974 -2.2392 1.0322
34 1 4.2422 -0.5349 1.0996
35 1 0.7588 -2.3942 0.7844
36 1 2.9780 -1.6739 5.0524
37 1 5.2010 -2.4899 5.7029
38 1 6.4454 -3.9103 7.7590
39 1 4.9415 -5.5295 2.6601
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000451361808.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:57:09
Heat of formation + Delta-G solvation = -134.928724 kcal
Electronic energy + Delta-G solvation = -26755.595984 eV
Core-core repulsion = 22814.570816 eV
Total energy + Delta-G solvation = -3941.025169 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 345.063 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-40.65138 -39.62501 -38.18769 -37.40266 -36.80155 -35.73733 -35.64133 -32.44518
-32.16497 -31.17023 -31.09361 -27.75984 -26.62536 -23.40804 -23.24979 -22.65397
-21.92687 -20.58403 -19.56614 -18.98106 -18.30334 -17.61812 -17.30567 -16.76651
-16.42120 -16.20168 -16.11658 -15.71385 -15.50094 -15.04673 -14.54092 -14.47891
-14.31035 -13.94847 -13.61860 -13.37799 -13.25839 -13.22275 -13.09709 -13.04297
-12.93130 -12.81598 -12.79846 -12.25568 -12.19570 -12.14317 -12.03169 -11.98272
-11.79858 -11.69424 -11.35870 -11.26164 -10.75701 -10.27004 -9.88192 -9.46586
-8.88179 -6.73661 -0.37938 0.30189 0.81560 1.17126 1.38051 1.41568
1.54491 2.10744 2.16725 2.45186 2.85635 2.91739 3.36353 3.55070
3.69592 3.73578 4.09560 4.11695 4.20985 4.30055 4.39644 4.48714
4.69760 4.76855 4.78697 4.81883 4.92036 4.95708 5.03001 5.04707
5.14656 5.22336 5.28642 5.33721 5.36507 5.60123 5.81236 5.97516
5.99082 6.11623 6.39074 6.59759 6.63965 8.05997
Molecular weight = 345.06amu
Principal moments of inertia in cm(-1)
A = 0.015588 B = 0.003927 C = 0.003752
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1795.814093 B = 7128.299997 C = 7460.109114
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.076 3.924
3 H 0.104 0.896
4 O -0.388 6.388
5 C 0.054 3.946
6 C -0.179 4.179
7 C 0.117 3.883
8 H 0.113 0.887
9 N -1.093 6.093
10 S 2.717 3.283
11 O -0.996 6.996
12 O -0.991 6.991
13 C -0.792 4.792
14 C -0.012 4.012
15 C -0.192 4.192
16 C 0.123 3.877
17 C -0.454 4.454
18 H 0.096 0.904
19 C 0.034 3.966
20 N -0.799 5.799
21 Si 0.994 3.006
22 H -0.252 1.252
23 H -0.260 1.260
24 H -0.266 1.266
25 C -0.235 4.235
26 C 0.089 3.911
27 Cl -0.080 7.080
28 H 0.058 0.942
29 H 0.081 0.919
30 H 0.075 0.925
31 H 0.076 0.924
32 H 0.081 0.919
33 H 0.072 0.928
34 H 0.096 0.904
35 H 0.421 0.579
36 H 0.126 0.874
37 H 0.119 0.881
38 H 0.300 0.700
39 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.347 7.142 -9.378 11.864
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C 0.017 3.983
3 H 0.122 0.878
4 O -0.308 6.308
5 C -0.023 4.023
6 C -0.219 4.219
7 C 0.009 3.991
8 H 0.131 0.869
9 N -0.853 5.853
10 S 2.811 3.189
11 O -0.986 6.986
12 O -0.982 6.982
13 C -0.885 4.885
14 C -0.032 4.032
15 C -0.212 4.212
16 C 0.119 3.881
17 C -0.480 4.480
18 H 0.114 0.886
19 C -0.185 4.185
20 N -0.421 5.421
21 Si 0.813 3.187
22 H -0.175 1.175
23 H -0.185 1.185
24 H -0.191 1.191
25 C -0.256 4.256
26 C 0.061 3.939
27 Cl -0.051 7.051
28 H 0.077 0.923
29 H 0.100 0.900
30 H 0.094 0.906
31 H 0.095 0.905
32 H 0.099 0.901
33 H 0.091 0.909
34 H 0.114 0.886
35 H 0.258 0.742
36 H 0.144 0.856
37 H 0.137 0.863
38 H 0.111 0.889
39 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges -2.261 7.154 -8.776 11.546
hybrid contribution 1.287 -0.897 0.261 1.590
sum -0.974 6.257 -8.515 10.611
Atomic orbital electron populations
1.21803 0.92306 1.03094 1.03486 1.23501 0.96204 0.95637 0.82989
0.87826 1.88860 1.28645 1.73983 1.39277 1.23137 0.84191 1.00939
0.94031 1.23539 0.97725 1.03920 0.96712 1.22459 0.89399 0.86536
1.00683 0.86932 1.55269 1.61589 1.41310 1.27121 1.00601 0.73405
0.72383 0.72492 1.93459 1.84826 1.53077 1.67253 1.93522 1.66077
1.52104 1.86473 1.29460 1.27636 1.14767 1.16614 1.20448 0.93719
0.96548 0.92489 1.21439 0.96840 0.98943 1.04018 1.18033 0.92438
0.88815 0.88824 1.20269 0.99966 1.31401 0.96391 0.88593 1.26993
1.04621 0.91619 0.95305 1.69819 1.38386 1.30444 1.03498 0.84959
0.75017 0.79209 0.79514 1.17512 1.18470 1.19063 1.21111 0.94790
1.04189 1.05525 1.20055 0.92225 0.92338 0.89326 1.98331 1.75278
1.81486 1.49989 0.92310 0.90026 0.90566 0.90540 0.90098 0.90930
0.88557 0.74155 0.85644 0.86332 0.88905 0.86439
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.79 9.34 71.98 0.67 -2.12 16
2 C 0.08 1.53 3.84 31.36 0.12 1.65 16
3 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16
4 O -0.39 -9.09 11.23 -148.98 -1.67 -10.76 16
5 C 0.05 1.15 7.70 72.35 0.56 1.71 16
6 C -0.18 -4.40 6.75 31.59 0.21 -4.19 16
7 C 0.12 2.89 3.53 46.38 0.16 3.05 16
8 H 0.11 2.73 7.60 -2.39 -0.02 2.71 16
9 N -1.09 -31.26 4.58 -163.66 -0.75 -32.01 16
10 S 2.72 101.51 5.05 -56.49 -0.29 101.23 16
11 O -1.00 -39.97 16.32 -128.00 -2.09 -42.06 16
12 O -0.99 -41.68 16.47 -128.00 -2.11 -43.78 16
13 C -0.79 -33.19 5.59 22.48 0.13 -33.07 16
14 C -0.01 -0.52 9.52 22.22 0.21 -0.31 16
15 C -0.19 -9.14 8.66 22.73 0.20 -8.94 16
16 C 0.12 5.92 5.55 -21.29 -0.12 5.80 16
17 C -0.45 -21.08 9.06 23.46 0.21 -20.87 16
18 H 0.10 4.19 7.87 -2.91 -0.02 4.17 16
19 C 0.03 1.48 5.24 85.26 0.45 1.92 16
20 N -0.80 -36.73 10.87 21.83 0.24 -36.49 16
21 Si 0.99 32.58 29.57 68.60 2.03 34.61 16
22 H -0.25 -8.01 7.11 99.48 0.71 -7.30 16
23 H -0.26 -8.20 7.11 99.48 0.71 -7.49 16
24 H -0.27 -8.54 7.11 99.48 0.71 -7.83 16
25 C -0.24 -10.58 9.57 22.75 0.22 -10.37 16
26 C 0.09 3.75 5.53 22.27 0.12 3.87 16
27 Cl -0.08 -2.94 26.41 -2.72 -0.07 -3.01 16
28 H 0.06 1.18 6.49 -2.39 -0.02 1.16 16
29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16
30 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16
31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16
32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16
33 H 0.07 2.14 6.94 -2.39 -0.02 2.13 16
34 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16
35 H 0.42 11.02 7.54 -96.75 -0.73 10.29 16
36 H 0.13 5.15 7.31 -2.91 -0.02 5.13 16
37 H 0.12 5.78 6.23 -2.91 -0.02 5.76 16
38 H 0.30 12.26 8.30 -92.71 -0.77 11.49 16
39 H 0.12 4.98 8.06 -2.91 -0.02 4.95 16
Total: -1.00 -58.40 346.88 -1.20 -59.59
By element:
Atomic # 1 Polarization: 34.17 SS G_CDS: 0.37 Total: 34.54 kcal
Atomic # 6 Polarization: -64.99 SS G_CDS: 3.14 Total: -61.85 kcal
Atomic # 7 Polarization: -67.99 SS G_CDS: -0.51 Total: -68.50 kcal
Atomic # 8 Polarization: -90.74 SS G_CDS: -5.87 Total: -96.61 kcal
Atomic # 14 Polarization: 32.58 SS G_CDS: 2.03 Total: 34.61 kcal
Atomic # 16 Polarization: 101.51 SS G_CDS: -0.29 Total: 101.23 kcal
Atomic # 17 Polarization: -2.94 SS G_CDS: -0.07 Total: -3.01 kcal
Total: -58.40 -1.20 -59.59 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000451361808.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -75.335 kcal
(2) G-P(sol) polarization free energy of solvation -58.395 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.730 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.198 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.594 kcal
(6) G-S(sol) free energy of system = (1) + (5) -134.929 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds