Wall clock time and date at job start Wed Apr 1 2020 02:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.90147 * 2 1 4 4 O 1.43589 * 110.04239 * 238.97527 * 2 1 3 5 5 C 1.43646 * 110.01238 * 242.46735 * 4 2 1 6 6 C 1.54946 * 105.13541 * 335.38770 * 5 4 2 7 7 C 1.54385 * 109.83312 * 120.93915 * 2 1 3 8 8 H 1.09000 * 110.84866 * 22.47130 * 7 2 1 9 9 N 1.46504 * 110.84454 * 259.05913 * 7 2 1 10 10 S 1.65601 * 119.99862 * 151.30748 * 9 7 2 11 11 O 1.42095 * 106.40154 * 48.59501 * 10 9 7 12 12 O 1.42100 * 106.39823 * 181.51330 * 10 9 7 13 13 C 1.76197 * 107.21775 * 295.05123 * 10 9 7 14 14 C 1.38633 * 119.75549 * 115.94476 * 13 10 9 15 15 C 1.37601 * 120.26233 * 179.72418 * 14 13 10 16 16 C 1.40746 * 119.77101 * 0.51800 * 15 14 13 17 17 C 1.41398 * 120.23966 * 179.77331 * 16 15 14 18 18 H 1.07995 * 120.00185 * 155.41959 * 17 16 15 19 19 C 1.39945 * 119.99748 * 335.41769 * 17 16 15 20 20 N 1.30819 * 119.99655 * 157.91590 * 19 17 16 21 21 Si 1.86796 * 120.00382 * 337.91907 * 19 17 16 22 22 H 1.48504 * 109.47064 * 95.13850 * 21 19 17 23 23 H 1.48495 * 109.47635 * 215.14051 * 21 19 17 24 24 H 1.48503 * 109.46937 * 335.14357 * 21 19 17 25 25 C 1.40685 * 119.52251 * 359.75630 * 16 15 14 26 26 C 1.37747 * 119.73257 * 359.97438 * 25 16 15 27 27 Cl 1.73594 * 119.89012 * 180.02562 * 26 25 16 28 28 H 1.09005 * 109.47053 * 299.06411 * 1 2 3 29 29 H 1.09001 * 109.47496 * 59.06608 * 1 2 3 30 30 H 1.09001 * 109.47040 * 179.06686 * 1 2 3 31 31 H 1.09007 * 110.30536 * 216.47409 * 5 4 2 32 32 H 1.08996 * 110.39346 * 94.35171 * 5 4 2 33 33 H 1.08994 * 111.12638 * 278.52427 * 6 5 4 34 34 H 1.08995 * 111.12283 * 154.36145 * 6 5 4 35 35 H 0.97000 * 119.99677 * 331.03508 * 9 7 2 36 36 H 1.07997 * 119.86984 * 359.97438 * 14 13 10 37 37 H 1.07999 * 120.11754 * 180.27246 * 15 14 13 38 38 H 0.96998 * 120.00340 * 180.02562 * 20 19 17 39 39 H 1.07994 * 120.13021 * 179.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 8 2.0221 -0.6953 -1.1560 5 6 2.7767 -1.8487 -0.7516 6 6 3.2723 -1.5262 0.6806 7 6 2.0538 -0.7467 1.2456 8 1 1.2999 -1.4324 1.6324 9 7 2.4751 0.1995 2.2817 10 16 2.3962 -0.2320 3.8786 11 8 3.0058 -1.5116 3.9790 12 8 2.8336 0.8977 4.6215 13 6 0.6943 -0.4590 4.2741 14 6 0.2356 -1.7135 4.6452 15 6 -1.0903 -1.9014 4.9617 16 6 -1.9847 -0.8166 4.8972 17 6 -3.3501 -0.9996 5.2157 18 1 -3.9429 -0.1621 5.5527 19 6 -3.9334 -2.2659 5.0941 20 7 -5.0182 -2.5535 5.7662 21 14 -3.1628 -3.5453 3.9723 22 1 -2.2696 -4.4266 4.7666 23 1 -4.2325 -4.3616 3.3442 24 1 -2.3736 -2.8650 2.9142 25 6 -1.5103 0.4512 4.5139 26 6 -0.1779 0.6178 4.2067 27 17 0.4120 2.1805 3.7339 28 1 -0.3633 0.4993 0.8983 29 1 -0.3634 0.5283 -0.8815 30 1 -0.3633 -1.0275 -0.0167 31 1 3.6242 -1.9997 -1.4203 32 1 2.1410 -2.7341 -0.7416 33 1 4.1631 -0.8986 0.6560 34 1 3.4525 -2.4388 1.2487 35 1 2.8039 1.0773 2.0322 36 1 0.9224 -2.5458 4.6900 37 1 -1.4442 -2.8788 5.2548 38 1 -5.4223 -3.4313 5.6823 39 1 -2.1881 1.2903 4.4607 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451361809.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:13 Heat of formation + Delta-G solvation = -118.218594 kcal Electronic energy + Delta-G solvation = -26842.555560 eV Core-core repulsion = 22902.254997 eV Total energy + Delta-G solvation = -3940.300563 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.70895 -38.17925 -36.68549 -35.92906 -35.28998 -34.80870 -34.17509 -31.47077 -31.06632 -30.25523 -29.88471 -26.04225 -25.45925 -22.17326 -21.86084 -21.48419 -21.25301 -19.22423 -18.04187 -17.66443 -17.07287 -16.74583 -15.99944 -15.74774 -15.23024 -14.74421 -14.65767 -14.29717 -13.98067 -13.86883 -13.48575 -13.16373 -13.02102 -12.89828 -12.83070 -12.53512 -11.98326 -11.89010 -11.81786 -11.57635 -11.50410 -11.39414 -11.33965 -11.24889 -11.15097 -11.12189 -10.84605 -10.65379 -10.48282 -10.07656 -9.92586 -9.63653 -9.58659 -9.24128 -8.43053 -8.00283 -7.58200 -5.15476 1.01203 1.76553 2.26072 2.67863 2.76817 2.90402 2.96332 3.36820 3.55182 3.76823 3.86187 4.24704 4.51833 4.62406 4.82285 4.90060 4.98714 5.08904 5.14316 5.32019 5.40824 5.58964 5.64367 5.73573 5.75770 5.91708 5.96286 6.03842 6.19624 6.23939 6.26969 6.33003 6.55195 6.77907 6.89617 6.91756 6.96720 7.13830 7.33042 7.49093 7.73561 8.06911 8.16399 9.38820 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.011559 B = 0.005037 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.700212 B = 5557.753758 C = 6391.453234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.077 3.923 3 H 0.086 0.914 4 O -0.379 6.379 5 C 0.051 3.949 6 C -0.174 4.174 7 C 0.130 3.870 8 H 0.105 0.895 9 N -1.109 6.109 10 S 2.697 3.303 11 O -0.980 6.980 12 O -0.966 6.966 13 C -0.804 4.804 14 C 0.025 3.975 15 C -0.257 4.257 16 C 0.116 3.884 17 C -0.394 4.394 18 H 0.103 0.897 19 C 0.079 3.921 20 N -0.760 5.760 21 Si 0.919 3.081 22 H -0.261 1.261 23 H -0.283 1.283 24 H -0.238 1.238 25 C -0.209 4.209 26 C 0.097 3.903 27 Cl -0.095 7.095 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.413 0.587 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.298 0.702 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.886 0.323 -9.611 12.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.018 3.982 3 H 0.104 0.896 4 O -0.298 6.298 5 C -0.026 4.026 6 C -0.213 4.213 7 C 0.021 3.979 8 H 0.123 0.877 9 N -0.865 5.865 10 S 2.792 3.208 11 O -0.970 6.970 12 O -0.956 6.956 13 C -0.899 4.899 14 C 0.004 3.996 15 C -0.277 4.277 16 C 0.111 3.889 17 C -0.418 4.418 18 H 0.121 0.879 19 C -0.148 4.148 20 N -0.379 5.379 21 Si 0.744 3.256 22 H -0.187 1.187 23 H -0.210 1.210 24 H -0.161 1.161 25 C -0.230 4.230 26 C 0.069 3.931 27 Cl -0.067 7.067 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.247 0.753 36 H 0.139 0.861 37 H 0.128 0.872 38 H 0.109 0.891 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.299 0.132 -9.144 12.350 hybrid contribution -0.559 -0.175 -0.287 0.653 sum 7.740 -0.044 -9.431 12.200 Atomic orbital electron populations 1.22155 0.93934 1.03100 1.03022 1.22991 0.94948 0.96248 0.83986 0.89589 1.88493 1.71098 1.40360 1.29886 1.23331 0.95210 0.89091 0.94984 1.23777 0.98996 1.02276 0.96268 1.22249 0.96074 0.90580 0.88947 0.87681 1.55681 1.81238 1.25437 1.24161 1.01303 0.74606 0.73096 0.71752 1.93490 1.75557 1.42342 1.85619 1.93566 1.81650 1.52053 1.68322 1.29081 1.23058 1.00174 1.37543 1.20197 0.95520 0.93319 0.90523 1.21077 0.93612 0.99185 1.13846 1.17709 0.93201 0.90946 0.86997 1.19943 0.94141 0.96187 1.31575 0.87899 1.26495 0.94291 0.99562 0.94414 1.69674 1.16185 1.23502 1.28542 0.86185 0.78853 0.79215 0.81366 1.18651 1.20995 1.16102 1.20877 0.92782 0.98498 1.10805 1.19945 0.93521 0.82985 0.96666 1.98334 1.88505 1.29250 1.90575 0.90483 0.91838 0.91957 0.89624 0.91921 0.89706 0.88677 0.75285 0.86147 0.87164 0.89086 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.45 37.16 0.35 -1.72 16 2 C 0.08 0.95 3.93 -26.01 -0.10 0.85 16 3 H 0.09 0.97 7.75 -51.93 -0.40 0.57 16 4 O -0.38 -4.82 11.04 -35.23 -0.39 -5.20 16 5 C 0.05 0.53 7.78 38.18 0.30 0.83 16 6 C -0.17 -1.97 6.85 -24.48 -0.17 -2.14 16 7 C 0.13 1.69 3.03 -65.98 -0.20 1.49 16 8 H 0.11 1.46 7.68 -51.93 -0.40 1.06 16 9 N -1.11 -15.39 5.31 -3.24 -0.02 -15.41 16 10 S 2.70 48.36 4.99 -107.50 -0.54 47.83 16 11 O -0.98 -18.94 16.71 -57.17 -0.96 -19.89 16 12 O -0.97 -19.38 16.56 -57.17 -0.95 -20.32 16 13 C -0.80 -16.03 5.81 -39.25 -0.23 -16.25 16 14 C 0.02 0.50 9.52 -39.67 -0.38 0.13 16 15 C -0.26 -5.59 7.30 -38.87 -0.28 -5.87 16 16 C 0.12 2.61 5.21 -106.82 -0.56 2.06 16 17 C -0.39 -9.15 9.56 -37.74 -0.36 -9.51 16 18 H 0.10 2.47 8.06 -52.49 -0.42 2.04 16 19 C 0.08 1.76 5.38 -17.34 -0.09 1.66 16 20 N -0.76 -17.20 13.93 55.55 0.77 -16.42 16 21 Si 0.92 17.84 24.51 -169.99 -4.17 13.68 16 22 H -0.26 -4.93 6.60 56.52 0.37 -4.56 16 23 H -0.28 -5.26 7.11 56.52 0.40 -4.85 16 24 H -0.24 -4.69 6.93 56.52 0.39 -4.30 16 25 C -0.21 -4.42 9.57 -38.84 -0.37 -4.79 16 26 C 0.10 1.95 6.29 -39.58 -0.25 1.70 16 27 Cl -0.10 -1.67 26.39 -51.86 -1.37 -3.04 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 0.74 8.14 -51.92 -0.42 0.31 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.41 4.86 8.56 -34.48 -0.29 4.57 16 36 H 0.12 2.25 7.31 -52.49 -0.38 1.87 16 37 H 0.11 2.32 4.30 -52.49 -0.23 2.10 16 38 H 0.30 5.99 8.30 -40.82 -0.34 5.65 16 39 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 346.75 15.07 5.23 5.23 Total: -1.00 -26.77 346.75 -9.41 -36.17 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -4.68 Total: 8.97 kcal Atomic # 6 Polarization: -29.23 SS G_CDS: -2.34 Total: -31.58 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.76 Total: -31.83 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -2.29 Total: -45.42 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -4.17 Total: 13.68 kcal Atomic # 16 Polarization: 48.36 SS G_CDS: -0.54 Total: 47.83 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -1.37 Total: -3.04 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -26.77 -9.41 -36.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451361809.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.048 kcal (2) G-P(sol) polarization free energy of solvation -26.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds