Wall clock time and date at job start Wed Apr 1 2020 02:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.90147 * 2 1 4 4 O 1.43589 * 110.04239 * 238.97527 * 2 1 3 5 5 C 1.43646 * 110.01238 * 242.46735 * 4 2 1 6 6 C 1.54946 * 105.13541 * 335.38770 * 5 4 2 7 7 C 1.54385 * 109.83312 * 120.93915 * 2 1 3 8 8 H 1.09000 * 110.84866 * 22.47130 * 7 2 1 9 9 N 1.46504 * 110.84454 * 259.05913 * 7 2 1 10 10 S 1.65601 * 119.99862 * 151.30748 * 9 7 2 11 11 O 1.42095 * 106.40154 * 48.59501 * 10 9 7 12 12 O 1.42100 * 106.39823 * 181.51330 * 10 9 7 13 13 C 1.76197 * 107.21775 * 295.05123 * 10 9 7 14 14 C 1.38633 * 119.75549 * 115.94476 * 13 10 9 15 15 C 1.37601 * 120.26233 * 179.72418 * 14 13 10 16 16 C 1.40746 * 119.77101 * 0.51800 * 15 14 13 17 17 C 1.41398 * 120.23966 * 179.77331 * 16 15 14 18 18 H 1.07995 * 120.00185 * 155.41959 * 17 16 15 19 19 C 1.39945 * 119.99748 * 335.41769 * 17 16 15 20 20 N 1.30819 * 119.99655 * 157.91590 * 19 17 16 21 21 Si 1.86796 * 120.00382 * 337.91907 * 19 17 16 22 22 H 1.48504 * 109.47064 * 95.13850 * 21 19 17 23 23 H 1.48495 * 109.47635 * 215.14051 * 21 19 17 24 24 H 1.48503 * 109.46937 * 335.14357 * 21 19 17 25 25 C 1.40685 * 119.52251 * 359.75630 * 16 15 14 26 26 C 1.37747 * 119.73257 * 359.97438 * 25 16 15 27 27 Cl 1.73594 * 119.89012 * 180.02562 * 26 25 16 28 28 H 1.09005 * 109.47053 * 299.06411 * 1 2 3 29 29 H 1.09001 * 109.47496 * 59.06608 * 1 2 3 30 30 H 1.09001 * 109.47040 * 179.06686 * 1 2 3 31 31 H 1.09007 * 110.30536 * 216.47409 * 5 4 2 32 32 H 1.08996 * 110.39346 * 94.35171 * 5 4 2 33 33 H 1.08994 * 111.12638 * 278.52427 * 6 5 4 34 34 H 1.08995 * 111.12283 * 154.36145 * 6 5 4 35 35 H 0.97000 * 119.99677 * 331.03508 * 9 7 2 36 36 H 1.07997 * 119.86984 * 359.97438 * 14 13 10 37 37 H 1.07999 * 120.11754 * 180.27246 * 15 14 13 38 38 H 0.96998 * 120.00340 * 180.02562 * 20 19 17 39 39 H 1.07994 * 120.13021 * 179.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 8 2.0221 -0.6953 -1.1560 5 6 2.7767 -1.8487 -0.7516 6 6 3.2723 -1.5262 0.6806 7 6 2.0538 -0.7467 1.2456 8 1 1.2999 -1.4324 1.6324 9 7 2.4751 0.1995 2.2817 10 16 2.3962 -0.2320 3.8786 11 8 3.0058 -1.5116 3.9790 12 8 2.8336 0.8977 4.6215 13 6 0.6943 -0.4590 4.2741 14 6 0.2356 -1.7135 4.6452 15 6 -1.0903 -1.9014 4.9617 16 6 -1.9847 -0.8166 4.8972 17 6 -3.3501 -0.9996 5.2157 18 1 -3.9429 -0.1621 5.5527 19 6 -3.9334 -2.2659 5.0941 20 7 -5.0182 -2.5535 5.7662 21 14 -3.1628 -3.5453 3.9723 22 1 -2.2696 -4.4266 4.7666 23 1 -4.2325 -4.3616 3.3442 24 1 -2.3736 -2.8650 2.9142 25 6 -1.5103 0.4512 4.5139 26 6 -0.1779 0.6178 4.2067 27 17 0.4120 2.1805 3.7339 28 1 -0.3633 0.4993 0.8983 29 1 -0.3634 0.5283 -0.8815 30 1 -0.3633 -1.0275 -0.0167 31 1 3.6242 -1.9997 -1.4203 32 1 2.1410 -2.7341 -0.7416 33 1 4.1631 -0.8986 0.6560 34 1 3.4525 -2.4388 1.2487 35 1 2.8039 1.0773 2.0322 36 1 0.9224 -2.5458 4.6900 37 1 -1.4442 -2.8788 5.2548 38 1 -5.4223 -3.4313 5.6823 39 1 -2.1881 1.2903 4.4607 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451361809.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:12 Heat of formation + Delta-G solvation = -136.176045 kcal Electronic energy + Delta-G solvation = -26843.334254 eV Core-core repulsion = 22902.254997 eV Total energy + Delta-G solvation = -3941.079257 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.65936 -39.83148 -38.21352 -37.47505 -36.82376 -35.91476 -35.83265 -32.74487 -32.39092 -31.56456 -31.25474 -27.72335 -26.42881 -23.80139 -23.13565 -22.78876 -22.26815 -20.60833 -19.72538 -19.08497 -18.42909 -17.89301 -17.37376 -17.06126 -16.54964 -16.32621 -15.97398 -15.64598 -15.11612 -15.05225 -14.79708 -14.72455 -14.62499 -14.41230 -13.98159 -13.59722 -13.49180 -13.15076 -13.06559 -13.03104 -12.93412 -12.86486 -12.82945 -12.67947 -12.36904 -12.31232 -12.17310 -12.04558 -11.79058 -11.70553 -11.48016 -11.16646 -10.54256 -10.40346 -10.10964 -9.63164 -9.24442 -6.89599 -0.44481 0.12018 0.58977 1.09226 1.19928 1.33985 1.42816 1.96066 2.02908 2.24074 2.75723 2.88674 3.16556 3.51252 3.55031 3.71372 3.93508 3.99803 4.10812 4.26294 4.33034 4.38218 4.41418 4.59789 4.62975 4.73708 4.79890 4.87699 4.89138 5.00465 5.06990 5.12885 5.22946 5.24086 5.30324 5.33778 5.60324 5.81640 6.00526 6.02003 6.08096 6.36736 6.44556 7.78755 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.011559 B = 0.005037 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.700212 B = 5557.753758 C = 6391.453234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.082 3.918 3 H 0.099 0.901 4 O -0.391 6.391 5 C 0.049 3.951 6 C -0.171 4.171 7 C 0.120 3.880 8 H 0.096 0.904 9 N -1.094 6.094 10 S 2.719 3.281 11 O -0.989 6.989 12 O -0.985 6.985 13 C -0.806 4.806 14 C 0.021 3.979 15 C -0.271 4.271 16 C 0.110 3.890 17 C -0.428 4.428 18 H 0.079 0.921 19 C 0.054 3.946 20 N -0.793 5.793 21 Si 0.958 3.042 22 H -0.250 1.250 23 H -0.268 1.268 24 H -0.245 1.245 25 C -0.224 4.224 26 C 0.095 3.905 27 Cl -0.070 7.070 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.426 0.574 36 H 0.140 0.860 37 H 0.115 0.885 38 H 0.308 0.692 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.018 -0.048 -11.284 15.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.023 3.977 3 H 0.117 0.883 4 O -0.311 6.311 5 C -0.028 4.028 6 C -0.211 4.211 7 C 0.012 3.988 8 H 0.114 0.886 9 N -0.855 5.855 10 S 2.812 3.188 11 O -0.979 6.979 12 O -0.975 6.975 13 C -0.898 4.898 14 C 0.001 3.999 15 C -0.291 4.291 16 C 0.105 3.895 17 C -0.454 4.454 18 H 0.097 0.903 19 C -0.169 4.169 20 N -0.414 5.414 21 Si 0.780 3.220 22 H -0.176 1.176 23 H -0.194 1.194 24 H -0.168 1.168 25 C -0.245 4.245 26 C 0.067 3.933 27 Cl -0.041 7.041 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.126 0.874 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.263 0.737 36 H 0.158 0.842 37 H 0.133 0.867 38 H 0.120 0.880 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.402 -0.232 -10.803 14.999 hybrid contribution -1.042 0.069 0.166 1.058 sum 9.359 -0.163 -10.637 14.169 Atomic orbital electron populations 1.22155 0.94512 1.02757 1.02899 1.22947 0.94474 0.96784 0.83527 0.88350 1.88484 1.71443 1.41124 1.30005 1.23497 0.95864 0.88552 0.94837 1.23784 0.98514 1.02142 0.96619 1.22425 0.96984 0.90555 0.88827 0.88611 1.55272 1.80912 1.26457 1.22822 1.00656 0.73349 0.72488 0.72312 1.93479 1.75183 1.43015 1.86221 1.93540 1.81534 1.52635 1.69793 1.29592 1.24414 0.99874 1.35936 1.20482 0.95381 0.94238 0.89771 1.21229 0.94156 0.99302 1.14401 1.17854 0.93043 0.91835 0.86727 1.19891 0.94706 0.96334 1.34451 0.90295 1.27030 0.94488 1.00458 0.94920 1.69669 1.17301 1.24659 1.29750 0.85595 0.78760 0.77708 0.79946 1.17551 1.19370 1.16802 1.21011 0.93654 0.98449 1.11375 1.20052 0.93234 0.84270 0.95794 1.98338 1.88102 1.27470 1.90217 0.91596 0.90933 0.92497 0.87396 0.91346 0.88625 0.88700 0.73730 0.84225 0.86701 0.88004 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.92 9.45 71.98 0.68 -3.24 16 2 C 0.08 1.80 3.93 31.06 0.12 1.93 16 3 H 0.10 1.93 7.75 -2.39 -0.02 1.91 16 4 O -0.39 -8.85 11.04 -148.98 -1.64 -10.49 16 5 C 0.05 0.87 7.78 72.65 0.56 1.44 16 6 C -0.17 -3.37 6.85 32.05 0.22 -3.15 16 7 C 0.12 2.84 3.03 46.25 0.14 2.98 16 8 H 0.10 2.47 7.68 -2.39 -0.02 2.45 16 9 N -1.09 -27.59 5.31 -164.15 -0.87 -28.46 16 10 S 2.72 91.58 4.99 -56.49 -0.28 91.30 16 11 O -0.99 -35.79 16.71 -128.00 -2.14 -37.92 16 12 O -0.98 -37.38 16.56 -128.00 -2.12 -39.50 16 13 C -0.81 -30.98 5.81 22.48 0.13 -30.85 16 14 C 0.02 0.84 9.52 22.21 0.21 1.05 16 15 C -0.27 -11.68 7.30 22.73 0.17 -11.51 16 16 C 0.11 5.02 5.21 -21.29 -0.11 4.90 16 17 C -0.43 -20.72 9.56 23.46 0.22 -20.49 16 18 H 0.08 4.05 8.06 -2.91 -0.02 4.02 16 19 C 0.05 2.48 5.38 85.26 0.46 2.93 16 20 N -0.79 -36.78 13.93 21.83 0.30 -36.48 16 21 Si 0.96 36.15 24.51 68.60 1.68 37.83 16 22 H -0.25 -8.96 6.60 99.48 0.66 -8.30 16 23 H -0.27 -9.35 7.11 99.48 0.71 -8.64 16 24 H -0.24 -9.40 6.93 99.48 0.69 -8.71 16 25 C -0.22 -9.56 9.57 22.75 0.22 -9.34 16 26 C 0.09 3.71 6.29 22.27 0.14 3.85 16 27 Cl -0.07 -2.35 26.39 -2.72 -0.07 -2.42 16 28 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.43 8.76 8.56 -96.74 -0.83 7.93 16 36 H 0.14 4.94 7.31 -2.91 -0.02 4.91 16 37 H 0.12 4.77 4.30 -2.91 -0.01 4.76 16 38 H 0.31 12.56 8.30 -92.71 -0.77 11.80 16 39 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -56.15 346.75 -1.77 -57.93 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 0.20 Total: 27.71 kcal Atomic # 6 Polarization: -62.67 SS G_CDS: 3.17 Total: -59.50 kcal Atomic # 7 Polarization: -64.37 SS G_CDS: -0.57 Total: -64.93 kcal Atomic # 8 Polarization: -82.01 SS G_CDS: -5.90 Total: -87.91 kcal Atomic # 14 Polarization: 36.15 SS G_CDS: 1.68 Total: 37.83 kcal Atomic # 16 Polarization: 91.58 SS G_CDS: -0.28 Total: 91.30 kcal Atomic # 17 Polarization: -2.35 SS G_CDS: -0.07 Total: -2.42 kcal Total: -56.15 -1.77 -57.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451361809.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.247 kcal (2) G-P(sol) polarization free energy of solvation -56.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds