Wall clock time and date at job start Wed Apr 1 2020 03:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 119.99736 * 2 1 4 4 C 1.53777 * 113.61412 * 60.00078 * 3 2 1 5 5 C 1.53786 * 87.08261 * 220.01486 * 4 3 2 6 6 O 1.42898 * 113.61316 * 139.97857 * 5 4 3 7 7 C 1.53780 * 113.61509 * 322.50224 * 3 2 1 8 8 S 1.65596 * 120.00075 * 179.97438 * 2 1 3 9 9 O 1.42102 * 106.40293 * 23.54059 * 8 2 1 10 10 O 1.42107 * 106.40289 * 156.46019 * 8 2 1 11 11 C 1.76193 * 107.21981 * 269.99880 * 8 2 1 12 12 C 1.38644 * 119.75366 * 114.72205 * 11 8 2 13 13 C 1.37607 * 120.25636 * 179.76326 * 12 11 8 14 14 C 1.40737 * 119.77511 * 0.53729 * 13 12 11 15 15 C 1.41398 * 120.23521 * 179.69897 * 14 13 12 16 16 H 1.07997 * 120.00496 * 24.41000 * 15 14 13 17 17 C 1.39944 * 119.99480 * 204.40516 * 15 14 13 18 18 N 1.30828 * 120.00507 * 17.86826 * 17 15 14 19 19 Si 1.86806 * 119.99840 * 197.86598 * 17 15 14 20 20 H 1.48499 * 109.47009 * 0.02562 * 19 17 15 21 21 H 1.48493 * 109.46951 * 120.00233 * 19 17 15 22 22 H 1.48499 * 109.46981 * 240.00206 * 19 17 15 23 23 C 1.40677 * 119.52436 * 359.72056 * 14 13 12 24 24 C 1.37752 * 119.73020 * 0.02562 * 23 14 13 25 25 Cl 1.73606 * 119.88719 * 179.97438 * 24 23 14 26 26 H 1.09001 * 109.46863 * 89.99701 * 1 2 3 27 27 H 1.08998 * 109.46974 * 209.99977 * 1 2 3 28 28 H 1.08997 * 109.47154 * 329.99933 * 1 2 3 29 29 H 1.09001 * 112.90483 * 191.25304 * 3 2 1 30 30 H 1.08999 * 113.61513 * 105.46809 * 4 3 2 31 31 H 1.08997 * 113.61483 * 334.56377 * 4 3 2 32 32 H 1.08994 * 113.61617 * 270.88611 * 5 4 3 33 33 H 0.96697 * 113.99729 * 180.02562 * 6 5 4 34 34 H 1.08996 * 113.61453 * 25.43215 * 7 3 2 35 35 H 1.09000 * 113.61114 * 254.52780 * 7 3 2 36 36 H 1.07999 * 119.86966 * 0.02562 * 12 11 8 37 37 H 1.08003 * 120.10863 * 180.26224 * 13 12 11 38 38 H 0.96994 * 119.99878 * 179.97438 * 18 17 15 39 39 H 1.07997 * 120.13381 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 1.8953 2.1545 1.2202 5 6 1.9129 3.3526 0.2563 6 8 0.8972 4.3205 0.5276 7 6 1.5373 2.3612 -0.8577 8 16 2.2930 -1.4341 0.0006 9 8 1.4114 -2.4067 -0.5434 10 8 3.5760 -1.1570 -0.5439 11 6 2.5538 -1.8850 1.6838 12 6 1.9493 -3.0243 2.1925 13 6 2.1498 -3.3888 3.5042 14 6 2.9630 -2.5944 4.3338 15 6 3.1706 -2.9564 5.6848 16 1 3.0618 -3.9864 5.9908 17 6 3.5170 -1.9799 6.6255 18 7 3.3136 -0.7149 6.3605 19 14 4.2698 -2.4825 8.2596 20 1 4.3954 -3.9612 8.3127 21 1 5.6142 -1.8667 8.3954 22 1 3.3986 -2.0190 9.3693 23 6 3.5676 -1.4375 3.8094 24 6 3.3575 -1.0941 2.4920 25 17 4.1010 0.3331 1.8408 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 3.2624 1.1439 -0.1959 30 1 2.6997 2.1739 1.9556 31 1 0.9182 1.9663 1.6651 32 1 2.9000 3.7974 0.1305 33 1 0.9029 5.0762 -0.0756 34 1 0.4624 2.2295 -0.9809 35 1 2.0527 2.5475 -1.7999 36 1 1.3219 -3.6303 1.5557 37 1 1.6811 -4.2791 3.8968 38 1 3.5533 -0.0382 7.0127 39 1 4.1939 -0.8210 4.4372 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451393295.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:05 Heat of formation + Delta-G solvation = -104.887485 kcal Electronic energy + Delta-G solvation = -26787.708113 eV Core-core repulsion = 22847.985630 eV Total energy + Delta-G solvation = -3939.722483 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.56952 -39.60772 -38.23577 -37.38388 -36.86714 -36.75936 -35.82374 -34.18442 -32.08270 -31.24086 -27.87754 -27.71763 -26.69373 -24.47057 -23.48681 -23.08380 -20.58808 -20.01198 -19.58467 -19.14214 -18.40366 -18.06136 -17.35112 -17.11047 -16.36467 -16.20286 -15.95190 -15.55560 -15.20370 -14.93868 -14.51620 -14.39806 -14.28766 -14.07676 -13.92566 -13.60255 -13.48270 -13.18157 -13.13001 -13.04606 -12.99095 -12.72817 -12.62949 -12.50574 -12.38909 -12.06790 -11.99682 -11.81505 -11.67133 -11.42263 -11.26058 -11.16486 -10.71597 -9.95502 -9.83168 -9.47886 -8.94471 -6.73685 -0.40134 0.30336 0.84783 1.20471 1.35427 1.40649 1.53358 2.06735 2.09451 2.40771 2.85599 3.33044 3.35600 3.51144 3.54490 3.73067 3.91136 3.95374 4.05934 4.19754 4.49559 4.63921 4.66849 4.76993 4.81419 4.81752 4.88839 4.92239 4.93159 5.05482 5.07977 5.12754 5.23351 5.39008 5.46949 5.52795 5.70080 5.79846 5.99219 6.30559 6.56841 6.62663 6.97280 7.99525 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.013815 B = 0.004427 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.305654 B = 6323.814958 C = 7478.321792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.984 5.984 3 C 0.117 3.883 4 C -0.154 4.154 5 C 0.089 3.911 6 O -0.572 6.572 7 C -0.161 4.161 8 S 2.712 3.288 9 O -0.994 6.994 10 O -0.987 6.987 11 C -0.808 4.808 12 C 0.003 3.997 13 C -0.250 4.250 14 C 0.115 3.885 15 C -0.448 4.448 16 H 0.100 0.900 17 C 0.035 3.965 18 N -0.786 5.786 19 Si 0.992 3.008 20 H -0.251 1.251 21 H -0.263 1.263 22 H -0.261 1.261 23 C -0.193 4.193 24 C 0.070 3.930 25 Cl -0.078 7.078 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.115 0.885 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.396 0.604 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.134 0.866 37 H 0.121 0.879 38 H 0.301 0.699 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.886 8.201 -6.394 10.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.821 5.821 3 C 0.010 3.990 4 C -0.193 4.193 5 C 0.029 3.971 6 O -0.380 6.380 7 C -0.200 4.200 8 S 2.808 3.192 9 O -0.985 6.985 10 O -0.977 6.977 11 C -0.900 4.900 12 C -0.017 4.017 13 C -0.271 4.271 14 C 0.111 3.889 15 C -0.474 4.474 16 H 0.118 0.882 17 C -0.186 4.186 18 N -0.408 5.408 19 Si 0.811 3.189 20 H -0.174 1.174 21 H -0.187 1.187 22 H -0.185 1.185 23 C -0.214 4.214 24 C 0.042 3.958 25 Cl -0.049 7.049 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.106 0.894 29 H 0.133 0.867 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.246 0.754 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.152 0.848 37 H 0.139 0.861 38 H 0.113 0.887 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.722 7.696 -6.658 10.534 hybrid contribution 0.481 0.320 1.164 1.300 sum -2.241 8.016 -5.494 9.973 Atomic orbital electron populations 1.21620 0.77193 1.03756 1.03125 1.57196 1.15637 1.20056 1.89162 1.22402 0.96904 0.81756 0.97908 1.23777 1.03106 0.94734 0.97702 1.23059 0.91805 0.87262 0.94977 1.86504 1.54956 1.36372 1.60154 1.24061 1.02965 0.94281 0.98721 1.00835 0.72470 0.72162 0.73747 1.93442 1.66815 1.60083 1.78172 1.93484 1.41223 1.84865 1.78177 1.29594 1.23626 1.11362 1.25450 1.20460 0.93663 0.92404 0.95126 1.21337 1.06346 1.04463 0.94908 1.18074 0.86952 0.90099 0.93798 1.20328 1.37588 0.97074 0.92399 0.88191 1.27051 0.92562 0.93916 1.05101 1.69830 1.30480 1.02808 1.37730 0.84991 0.78549 0.80414 0.74989 1.17447 1.18696 1.18499 1.21250 1.05817 1.01783 0.92501 1.20177 0.94643 0.87426 0.93550 1.98286 1.82364 1.38753 1.85516 0.90604 0.91489 0.89439 0.86698 0.91144 0.89617 0.88158 0.75400 0.87838 0.88941 0.84847 0.86074 0.88719 0.86039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.29 8.89 127.77 1.14 3.42 16 2 N -0.98 -31.39 3.39 -513.76 -1.74 -33.13 16 3 C 0.12 3.35 2.71 45.52 0.12 3.48 16 4 C -0.15 -4.39 6.71 31.12 0.21 -4.18 16 5 C 0.09 1.87 5.21 31.12 0.16 2.04 16 6 O -0.57 -11.54 13.67 -148.98 -2.04 -13.58 16 7 C -0.16 -3.34 7.34 31.12 0.23 -3.11 16 8 S 2.71 107.58 5.14 -56.49 -0.29 107.29 16 9 O -0.99 -41.50 16.02 -128.00 -2.05 -43.55 16 10 O -0.99 -42.42 15.17 -128.00 -1.94 -44.36 16 11 C -0.81 -36.13 5.93 22.48 0.13 -35.99 16 12 C 0.00 0.15 9.52 22.22 0.21 0.36 16 13 C -0.25 -11.60 9.79 22.73 0.22 -11.38 16 14 C 0.11 5.75 5.57 -21.29 -0.12 5.63 16 15 C -0.45 -21.31 9.05 23.46 0.21 -21.10 16 16 H 0.10 4.44 7.91 -2.91 -0.02 4.42 16 17 C 0.03 1.52 5.14 85.26 0.44 1.96 16 18 N -0.79 -36.42 10.95 21.83 0.24 -36.18 16 19 Si 0.99 32.99 29.60 68.60 2.03 35.02 16 20 H -0.25 -8.14 7.11 99.48 0.71 -7.44 16 21 H -0.26 -8.53 7.11 99.48 0.71 -7.82 16 22 H -0.26 -8.28 7.11 99.48 0.71 -7.58 16 23 C -0.19 -9.65 8.47 22.75 0.19 -9.46 16 24 C 0.07 3.26 6.29 22.27 0.14 3.40 16 25 Cl -0.08 -3.10 20.16 -2.72 -0.05 -3.16 16 26 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.07 1.83 7.79 -2.39 -0.02 1.81 16 28 H 0.09 2.00 6.34 -2.39 -0.02 1.98 16 29 H 0.12 3.58 5.47 -2.39 -0.01 3.56 16 30 H 0.07 2.21 6.04 -2.39 -0.01 2.20 16 31 H 0.09 2.59 6.92 -2.39 -0.02 2.58 16 32 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.40 3.95 9.12 -74.06 -0.68 3.27 16 34 H 0.10 2.02 6.72 -2.39 -0.02 2.01 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.13 5.33 7.31 -2.91 -0.02 5.31 16 37 H 0.12 5.06 8.06 -2.91 -0.02 5.03 16 38 H 0.30 12.37 8.30 -92.71 -0.77 11.60 16 39 H 0.12 6.24 6.16 -2.91 -0.02 6.22 16 Total: -1.00 -62.36 336.59 -2.12 -64.48 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: 0.44 Total: 32.09 kcal Atomic # 6 Polarization: -68.21 SS G_CDS: 3.29 Total: -64.92 kcal Atomic # 7 Polarization: -67.81 SS G_CDS: -1.50 Total: -69.31 kcal Atomic # 8 Polarization: -95.46 SS G_CDS: -6.03 Total: -101.49 kcal Atomic # 14 Polarization: 32.99 SS G_CDS: 2.03 Total: 35.02 kcal Atomic # 16 Polarization: 107.58 SS G_CDS: -0.29 Total: 107.29 kcal Atomic # 17 Polarization: -3.10 SS G_CDS: -0.05 Total: -3.16 kcal Total: -62.36 -2.12 -64.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451393295.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.412 kcal (2) G-P(sol) polarization free energy of solvation -62.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds