Wall clock time and date at job start Wed Apr 1 2020 02:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.87414 * 2 1 4 4 C 1.54325 * 109.87779 * 121.01169 * 2 1 3 5 5 C 1.55161 * 102.94233 * 141.61073 * 4 2 1 6 6 H 1.08995 * 111.00171 * 82.57085 * 5 4 2 7 7 O 1.42901 * 111.00177 * 206.42682 * 5 4 2 8 8 C 1.54912 * 101.57925 * 324.49963 * 5 4 2 9 9 N 1.47015 * 109.88347 * 238.97802 * 2 1 3 10 10 S 1.65599 * 125.64921 * 61.61001 * 9 2 1 11 11 O 1.42105 * 106.40299 * 28.94251 * 10 9 2 12 12 O 1.42098 * 106.40428 * 161.85929 * 10 9 2 13 13 C 1.76193 * 107.22129 * 275.40301 * 10 9 2 14 14 C 1.38631 * 119.76076 * 113.65387 * 13 10 9 15 15 C 1.37604 * 120.26673 * 180.02562 * 14 13 10 16 16 C 1.40737 * 119.76841 * 359.97438 * 15 14 13 17 17 C 1.41404 * 120.23580 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00167 * 208.28352 * 17 16 15 19 19 C 1.39937 * 119.99791 * 28.28415 * 17 16 15 20 20 N 1.30821 * 120.00253 * 12.54312 * 19 17 16 21 21 Si 1.86807 * 119.99813 * 192.54341 * 19 17 16 22 22 H 1.48504 * 109.46963 * 60.00084 * 21 19 17 23 23 H 1.48498 * 109.47167 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47050 * 299.99940 * 21 19 17 25 25 C 1.40672 * 119.52965 * 0.02562 * 16 15 14 26 26 C 1.37759 * 119.73073 * 359.76179 * 25 16 15 27 27 Cl 1.73597 * 119.89085 * 180.24949 * 26 25 16 28 28 H 1.08998 * 109.47189 * 300.70839 * 1 2 3 29 29 H 1.09001 * 109.46684 * 60.70483 * 1 2 3 30 30 H 1.08997 * 109.47318 * 180.69929 * 1 2 3 31 31 H 1.09000 * 110.72255 * 259.97267 * 4 2 1 32 32 H 1.09004 * 110.71727 * 23.24539 * 4 2 1 33 33 H 0.96698 * 113.99352 * 180.02562 * 7 5 4 34 34 H 1.09001 * 110.36777 * 155.84891 * 8 5 4 35 35 H 1.09004 * 110.36224 * 278.16960 * 8 5 4 36 36 H 1.08008 * 119.86775 * 359.97438 * 14 13 10 37 37 H 1.07997 * 120.11447 * 179.97438 * 15 14 13 38 38 H 0.97010 * 119.99780 * 180.02562 * 20 19 17 39 39 H 1.08001 * 120.13818 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7477 1.2439 5 6 3.2876 -1.5133 0.6947 6 1 4.1653 -0.8680 0.6618 7 8 3.5464 -2.6879 1.4663 8 6 2.8145 -1.8805 -0.7340 9 7 2.0300 -0.7125 -1.1848 10 16 1.7566 -0.2779 -2.7592 11 8 1.5955 1.1340 -2.7635 12 8 2.7370 -0.9506 -3.5372 13 6 0.1993 -0.9577 -3.2250 14 6 -0.8635 -0.1134 -3.5068 15 6 -2.0845 -0.6331 -3.8711 16 6 -2.2524 -2.0277 -3.9579 17 6 -3.5026 -2.5724 -4.3319 18 1 -3.7917 -3.5520 -3.9808 19 6 -4.3653 -1.8422 -5.1570 20 7 -3.9294 -0.7776 -5.7800 21 14 -6.1394 -2.3876 -5.3689 22 1 -6.8188 -2.3859 -4.0484 23 1 -6.8386 -1.4523 -6.2861 24 1 -6.1710 -3.7580 -5.9401 25 6 -1.1678 -2.8760 -3.6700 26 6 0.0469 -2.3340 -3.3115 27 17 1.3900 -3.3768 -2.9616 28 1 -0.3633 0.5248 0.8835 29 1 -0.3633 0.5029 -0.8963 30 1 -0.3634 -1.0275 0.0125 31 1 2.3528 -0.0431 2.0202 32 1 1.3049 -1.4435 1.6203 33 1 4.3083 -3.1991 1.1608 34 1 3.6716 -2.0359 -1.3892 35 1 2.1886 -2.7725 -0.7087 36 1 -0.7330 0.9566 -3.4393 37 1 -2.9109 0.0269 -4.0896 38 1 -4.5277 -0.2712 -6.3517 39 1 -1.2856 -3.9476 -3.7340 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451457640.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:38 Heat of formation + Delta-G solvation = -114.415146 kcal Electronic energy + Delta-G solvation = -26797.016238 eV Core-core repulsion = 22856.880605 eV Total energy + Delta-G solvation = -3940.135633 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.05324 -37.90165 -36.63374 -35.91911 -35.74017 -35.16746 -34.04377 -31.04371 -30.46690 -29.73579 -29.37807 -26.03610 -25.53895 -21.91681 -21.60676 -21.49707 -20.92126 -18.42959 -17.84440 -17.63049 -17.33031 -16.50069 -15.76865 -15.67856 -14.90295 -14.60085 -14.28322 -13.93985 -13.63208 -13.58758 -13.43100 -13.22587 -12.86067 -12.58377 -12.38439 -12.23223 -12.01164 -11.84695 -11.72770 -11.51410 -11.47637 -11.36194 -11.21944 -11.15378 -10.90357 -10.65399 -10.61546 -10.55387 -10.48064 -10.09594 -10.01209 -9.65505 -9.56792 -8.72169 -8.12068 -7.71893 -7.22792 -4.96519 1.07214 2.02500 2.58811 2.81110 2.83466 2.85026 2.89156 3.47641 3.59417 4.05281 4.12356 4.43046 4.46252 4.63988 4.96081 5.09957 5.17582 5.21703 5.35647 5.46649 5.65357 5.78040 5.79586 5.88794 5.91628 6.05681 6.14756 6.39577 6.42626 6.49486 6.52596 6.64074 6.69726 6.79294 6.95422 7.12142 7.37645 7.48625 7.55371 7.73077 8.13589 8.33120 8.40094 9.68140 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.017498 B = 0.003784 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.831613 B = 7398.344501 C = 7515.850727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.152 3.848 3 H 0.080 0.920 4 C -0.115 4.115 5 C 0.091 3.909 6 H 0.072 0.928 7 O -0.558 6.558 8 C 0.090 3.910 9 N -1.005 6.005 10 S 2.710 3.290 11 O -0.977 6.977 12 O -0.965 6.965 13 C -0.784 4.784 14 C -0.009 4.009 15 C -0.174 4.174 16 C 0.146 3.854 17 C -0.428 4.428 18 H 0.090 0.910 19 C 0.070 3.930 20 N -0.766 5.766 21 Si 0.923 3.077 22 H -0.259 1.259 23 H -0.273 1.273 24 H -0.260 1.260 25 C -0.221 4.221 26 C 0.092 3.908 27 Cl -0.101 7.101 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.380 0.620 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.116 0.884 37 H 0.128 0.872 38 H 0.292 0.708 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.230 -0.505 9.852 11.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.046 3.954 3 H 0.098 0.902 4 C -0.153 4.153 5 C 0.030 3.970 6 H 0.090 0.910 7 O -0.363 6.363 8 C -0.036 4.036 9 N -0.842 5.842 10 S 2.808 3.192 11 O -0.968 6.968 12 O -0.956 6.956 13 C -0.879 4.879 14 C -0.029 4.029 15 C -0.194 4.194 16 C 0.141 3.859 17 C -0.455 4.455 18 H 0.108 0.892 19 C -0.153 4.153 20 N -0.388 5.388 21 Si 0.745 3.255 22 H -0.183 1.183 23 H -0.198 1.198 24 H -0.185 1.185 25 C -0.242 4.242 26 C 0.064 3.936 27 Cl -0.073 7.073 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.227 0.773 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.134 0.866 37 H 0.146 0.854 38 H 0.103 0.897 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.350 0.349 9.435 11.378 hybrid contribution -0.902 -0.924 -0.582 1.417 sum 5.448 -0.576 8.853 10.411 Atomic orbital electron populations 1.22336 0.94501 1.03402 1.03046 1.21226 0.94543 0.95770 0.83863 0.90158 1.22684 0.96926 0.98943 0.96789 1.22999 0.97539 0.86651 0.89811 0.90995 1.86507 1.53782 1.38949 1.57013 1.22796 0.95782 0.89547 0.95513 1.58827 1.65513 1.37912 1.21989 1.00910 0.74422 0.72949 0.70903 1.93476 1.87716 1.29666 1.85956 1.93532 1.59358 1.76074 1.66634 1.29158 1.22541 1.00251 1.35945 1.20270 0.91753 0.97168 0.93754 1.21426 0.96832 0.95607 1.05568 1.17726 0.91286 0.91787 0.85066 1.19908 0.99094 1.03104 1.23389 0.89194 1.26144 1.01614 0.93837 0.93655 1.69776 1.37666 1.13054 1.18305 0.86102 0.79839 0.79875 0.79637 1.18293 1.19781 1.18463 1.20974 0.91430 0.99008 1.12789 1.19974 0.87550 0.88461 0.97635 1.98315 1.47275 1.68542 1.93144 0.91348 0.91433 0.91381 0.89939 0.89435 0.77327 0.90241 0.90264 0.86636 0.85414 0.89657 0.87055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 9.03 37.16 0.34 -2.11 16 2 C 0.15 2.06 3.49 -66.95 -0.23 1.82 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.11 -1.27 6.21 -24.89 -0.15 -1.43 16 5 C 0.09 1.00 4.43 -24.58 -0.11 0.90 16 6 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 7 O -0.56 -5.82 13.47 -35.23 -0.47 -6.30 16 8 C 0.09 1.24 5.41 -2.35 -0.01 1.23 16 9 N -1.01 -16.09 3.38 -104.18 -0.35 -16.44 16 10 S 2.71 54.35 4.86 -107.50 -0.52 53.83 16 11 O -0.98 -20.97 16.60 -57.17 -0.95 -21.92 16 12 O -0.97 -21.09 15.63 -57.17 -0.89 -21.98 16 13 C -0.78 -17.15 5.45 -39.25 -0.21 -17.37 16 14 C -0.01 -0.20 8.82 -39.67 -0.35 -0.55 16 15 C -0.17 -4.14 8.66 -38.87 -0.34 -4.48 16 16 C 0.15 3.52 5.55 -106.83 -0.59 2.93 16 17 C -0.43 -10.00 9.06 -37.74 -0.34 -10.34 16 18 H 0.09 1.97 7.88 -52.49 -0.41 1.56 16 19 C 0.07 1.54 5.22 -17.35 -0.09 1.45 16 20 N -0.77 -17.64 10.91 55.55 0.61 -17.03 16 21 Si 0.92 16.38 29.58 -169.99 -5.03 11.35 16 22 H -0.26 -4.55 7.11 56.52 0.40 -4.15 16 23 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 24 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 25 C -0.22 -5.06 9.57 -38.84 -0.37 -5.43 16 26 C 0.09 2.02 6.29 -39.57 -0.25 1.77 16 27 Cl -0.10 -1.94 23.46 -51.86 -1.22 -3.16 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.08 6.86 -51.93 -0.36 0.73 16 30 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 1.01 7.84 -51.93 -0.41 0.60 16 33 H 0.38 2.37 9.12 45.56 0.42 2.78 16 34 H 0.08 1.08 7.79 -51.93 -0.40 0.67 16 35 H 0.08 1.15 6.53 -51.93 -0.34 0.81 16 36 H 0.12 2.44 7.31 -52.48 -0.38 2.05 16 37 H 0.13 3.07 6.25 -52.49 -0.33 2.74 16 38 H 0.29 6.05 8.30 -40.82 -0.34 5.72 16 39 H 0.11 2.39 8.06 -52.49 -0.42 1.97 16 LS Contribution 343.04 15.07 5.17 5.17 Total: -1.00 -28.78 343.04 -10.27 -39.05 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -3.89 Total: 9.05 kcal Atomic # 6 Polarization: -28.90 SS G_CDS: -2.72 Total: -31.62 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.25 Total: -33.48 kcal Atomic # 8 Polarization: -47.89 SS G_CDS: -2.32 Total: -50.20 kcal Atomic # 14 Polarization: 16.38 SS G_CDS: -5.03 Total: 11.35 kcal Atomic # 16 Polarization: 54.35 SS G_CDS: -0.52 Total: 53.83 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -1.22 Total: -3.16 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.78 -10.27 -39.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451457640.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.362 kcal (2) G-P(sol) polarization free energy of solvation -28.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds