Wall clock time and date at job start Wed Apr 1 2020 02:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09004 * 110.00057 * 2 1 4 4 C 1.54338 * 109.77839 * 121.15756 * 2 1 3 5 5 C 1.55165 * 103.01828 * 97.49710 * 4 2 1 6 6 H 1.08999 * 111.00131 * 277.23190 * 5 4 2 7 7 O 1.42895 * 111.00453 * 153.38017 * 5 4 2 8 8 C 1.54911 * 101.57937 * 35.30765 * 5 4 2 9 9 N 1.47019 * 109.88195 * 238.89753 * 2 1 3 10 10 S 1.65598 * 125.64705 * 59.56352 * 9 2 1 11 11 O 1.42098 * 106.40015 * 211.43048 * 10 9 2 12 12 O 1.42093 * 106.40288 * 344.35294 * 10 9 2 13 13 C 1.76202 * 107.21943 * 97.89392 * 10 9 2 14 14 C 1.38638 * 119.76029 * 112.76713 * 13 10 9 15 15 C 1.37599 * 120.26368 * 179.97438 * 14 13 10 16 16 C 1.40742 * 119.76971 * 0.02562 * 15 14 13 17 17 C 1.41399 * 120.23849 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00562 * 206.06040 * 17 16 15 19 19 C 1.39950 * 119.99575 * 26.06007 * 17 16 15 20 20 N 1.30822 * 120.00064 * 12.51357 * 19 17 16 21 21 Si 1.86804 * 119.99852 * 192.50890 * 19 17 16 22 22 H 1.48502 * 109.46854 * 60.00137 * 21 19 17 23 23 H 1.48501 * 109.46801 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47170 * 300.00117 * 21 19 17 25 25 C 1.40670 * 119.52768 * 0.02562 * 16 15 14 26 26 C 1.37757 * 119.73244 * 359.71741 * 25 16 15 27 27 Cl 1.73601 * 119.89134 * 180.27340 * 26 25 16 28 28 H 1.09003 * 109.47731 * 181.09957 * 1 2 3 29 29 H 1.09004 * 109.47378 * 301.10001 * 1 2 3 30 30 H 1.09008 * 109.47223 * 61.09898 * 1 2 3 31 31 H 1.09000 * 110.85085 * 339.02943 * 4 2 1 32 32 H 1.09000 * 110.66908 * 215.87774 * 4 2 1 33 33 H 0.96695 * 114.00178 * 186.34414 * 7 5 4 34 34 H 1.08999 * 110.36236 * 204.14993 * 8 5 4 35 35 H 1.08999 * 110.36941 * 81.83045 * 8 5 4 36 36 H 1.07993 * 119.86727 * 359.97438 * 14 13 10 37 37 H 1.07998 * 120.11938 * 180.02562 * 15 14 13 38 38 H 0.97000 * 119.99910 * 180.02562 * 20 19 17 39 39 H 1.08007 * 120.13672 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0522 -0.7514 1.2428 5 6 2.3560 -2.1697 0.6917 6 1 1.4520 -2.7778 0.6582 7 8 3.3742 -2.8113 1.4621 8 6 2.8612 -1.8466 -0.7367 9 7 2.0299 -0.7142 -1.1838 10 16 1.7170 -0.3093 -2.7588 11 8 1.7093 -1.5265 -3.4920 12 8 0.6160 0.5884 -2.7312 13 6 3.0982 0.6151 -3.3439 14 6 3.9178 0.0806 -4.3261 15 6 4.9988 0.7937 -4.7910 16 6 5.2721 2.0704 -4.2655 17 6 6.3807 2.8117 -4.7356 18 1 6.8455 3.5503 -4.0994 19 6 6.8756 2.5881 -6.0255 20 7 6.1795 1.8836 -6.8802 21 14 8.5302 3.2957 -6.5266 22 1 9.5895 2.7553 -5.6372 23 1 8.8241 2.9192 -7.9327 24 1 8.4920 4.7754 -6.4086 25 6 4.4351 2.6034 -3.2684 26 6 3.3551 1.8744 -2.8214 27 17 2.3154 2.5312 -1.5962 28 1 -0.3635 -1.0275 0.0197 29 1 -0.3634 0.5308 0.8800 30 1 -0.3634 0.4967 -0.8997 31 1 1.2884 -0.7949 2.0193 32 1 2.9599 -0.2826 1.6226 33 1 3.6667 -3.6586 1.0995 34 1 2.7177 -2.7050 -1.3929 35 1 3.9123 -1.5589 -0.7113 36 1 3.7069 -0.8994 -4.7279 37 1 5.6355 0.3752 -5.5565 38 1 6.5227 1.7283 -7.7740 39 1 4.6354 3.5824 -2.8586 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451457648.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:48 Heat of formation + Delta-G solvation = -112.425106 kcal Electronic energy + Delta-G solvation = -26630.678840 eV Core-core repulsion = 22690.629501 eV Total energy + Delta-G solvation = -3940.049339 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.10514 -37.90304 -36.66531 -35.87636 -35.78369 -35.16695 -34.06625 -31.05774 -30.47412 -29.59929 -29.37524 -26.07129 -25.60654 -22.11058 -21.69800 -21.42799 -20.79676 -18.42245 -17.86806 -17.73951 -17.24892 -16.55625 -15.74595 -15.54187 -14.84615 -14.63445 -14.31618 -14.07327 -13.61410 -13.57447 -13.46099 -13.21026 -12.87562 -12.66234 -12.57287 -12.32910 -12.10404 -11.80711 -11.55029 -11.52374 -11.47106 -11.38808 -11.31646 -11.14142 -10.84849 -10.77577 -10.64400 -10.53534 -10.21424 -10.09620 -9.96819 -9.65322 -9.53678 -8.72953 -8.15869 -7.72475 -7.23917 -4.98419 1.07306 2.01754 2.58540 2.79185 2.82418 2.83972 2.87900 3.46762 3.57759 4.05521 4.13726 4.41581 4.46237 4.64978 4.95256 5.10191 5.17450 5.23236 5.38738 5.50154 5.58080 5.77238 5.82011 5.87412 5.89794 6.02380 6.16272 6.33040 6.46416 6.51350 6.57425 6.63810 6.69283 6.79283 6.94905 7.11263 7.38624 7.49248 7.54238 7.72146 8.12856 8.31758 8.39574 9.65269 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.016840 B = 0.003695 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.356321 B = 7576.455128 C = 7785.726646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.145 3.855 3 H 0.088 0.912 4 C -0.117 4.117 5 C 0.094 3.906 6 H 0.073 0.927 7 O -0.559 6.559 8 C 0.088 3.912 9 N -1.004 6.004 10 S 2.710 3.290 11 O -0.980 6.980 12 O -0.959 6.959 13 C -0.790 4.790 14 C -0.010 4.010 15 C -0.178 4.178 16 C 0.143 3.857 17 C -0.424 4.424 18 H 0.091 0.909 19 C 0.069 3.931 20 N -0.764 5.764 21 Si 0.924 3.076 22 H -0.258 1.258 23 H -0.273 1.273 24 H -0.260 1.260 25 C -0.222 4.222 26 C 0.091 3.909 27 Cl -0.097 7.097 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.380 0.620 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.132 0.868 38 H 0.292 0.708 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.699 -5.175 9.789 11.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.039 3.961 3 H 0.105 0.895 4 C -0.155 4.155 5 C 0.034 3.966 6 H 0.091 0.909 7 O -0.364 6.364 8 C -0.038 4.038 9 N -0.841 5.841 10 S 2.809 3.191 11 O -0.971 6.971 12 O -0.950 6.950 13 C -0.885 4.885 14 C -0.031 4.031 15 C -0.198 4.198 16 C 0.138 3.862 17 C -0.451 4.451 18 H 0.109 0.891 19 C -0.154 4.154 20 N -0.386 5.386 21 Si 0.747 3.253 22 H -0.183 1.183 23 H -0.197 1.197 24 H -0.184 1.184 25 C -0.243 4.243 26 C 0.063 3.937 27 Cl -0.068 7.068 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.227 0.773 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.134 0.866 37 H 0.150 0.850 38 H 0.104 0.896 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.676 -4.890 9.469 11.274 hybrid contribution 1.388 0.267 -0.647 1.555 sum -2.288 -4.623 8.822 10.219 Atomic orbital electron populations 1.22556 0.94954 1.02419 1.04545 1.21476 0.94192 0.96886 0.83500 0.89470 1.22696 1.02244 0.93570 0.97022 1.22966 0.90084 0.94044 0.89516 0.90934 1.86505 1.57927 1.39235 1.52737 1.22644 0.95756 0.89360 0.96087 1.58721 1.64093 1.39175 1.22069 1.00911 0.74401 0.73253 0.70546 1.93469 1.87797 1.46130 1.69721 1.93499 1.50494 1.65609 1.85404 1.29181 1.29224 1.09562 1.20491 1.20302 0.92812 0.97768 0.92207 1.21517 0.99373 0.94875 1.04029 1.17744 0.89738 0.90781 0.87896 1.19944 1.09912 1.16961 0.98234 0.89138 1.26181 0.99259 0.93777 0.96172 1.69773 1.35830 1.27214 1.05783 0.86078 0.80364 0.80420 0.78464 1.18254 1.19740 1.18420 1.20966 0.97216 1.00290 1.05863 1.19983 0.91392 0.92401 0.89921 1.98305 1.67446 1.86454 1.54606 0.92651 0.91683 0.88938 0.89857 0.89772 0.77259 0.90045 0.90658 0.86648 0.85004 0.89613 0.86996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.47 9.07 37.15 0.34 -2.13 16 2 C 0.15 2.05 3.20 -66.95 -0.21 1.83 16 3 H 0.09 1.31 5.06 -51.93 -0.26 1.05 16 4 C -0.12 -1.35 6.22 -24.88 -0.15 -1.51 16 5 C 0.09 1.06 4.43 -24.58 -0.11 0.95 16 6 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 7 O -0.56 -5.86 13.47 -35.23 -0.47 -6.34 16 8 C 0.09 1.18 6.89 -2.53 -0.02 1.16 16 9 N -1.00 -16.12 3.39 -104.42 -0.35 -16.47 16 10 S 2.71 53.98 5.21 -107.50 -0.56 53.42 16 11 O -0.98 -21.08 16.41 -57.17 -0.94 -22.02 16 12 O -0.96 -20.24 13.37 -57.17 -0.76 -21.00 16 13 C -0.79 -17.53 5.94 -39.25 -0.23 -17.76 16 14 C -0.01 -0.24 9.52 -39.67 -0.38 -0.62 16 15 C -0.18 -4.29 8.68 -38.87 -0.34 -4.63 16 16 C 0.14 3.48 5.58 -106.83 -0.60 2.88 16 17 C -0.42 -9.91 9.07 -37.74 -0.34 -10.26 16 18 H 0.09 1.98 7.88 -52.49 -0.41 1.57 16 19 C 0.07 1.51 5.24 -17.34 -0.09 1.42 16 20 N -0.76 -17.53 10.75 55.55 0.60 -16.94 16 21 Si 0.92 16.30 29.58 -169.99 -5.03 11.27 16 22 H -0.26 -4.52 7.11 56.52 0.40 -4.12 16 23 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16 24 H -0.26 -4.56 7.11 56.52 0.40 -4.16 16 25 C -0.22 -5.13 9.57 -38.84 -0.37 -5.50 16 26 C 0.09 2.02 6.29 -39.57 -0.25 1.77 16 27 Cl -0.10 -1.85 23.21 -51.86 -1.20 -3.05 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 1.46 5.71 -51.92 -0.30 1.16 16 31 H 0.08 0.81 7.83 -51.93 -0.41 0.40 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.38 2.37 9.11 45.56 0.42 2.78 16 34 H 0.08 1.04 7.84 -51.93 -0.41 0.63 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.12 2.47 7.31 -52.49 -0.38 2.09 16 37 H 0.13 3.19 6.07 -52.49 -0.32 2.88 16 38 H 0.29 6.02 8.30 -40.82 -0.34 5.68 16 39 H 0.11 2.40 8.06 -52.48 -0.42 1.98 16 LS Contribution 340.28 15.07 5.13 5.13 Total: -1.00 -28.63 340.28 -10.10 -38.72 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -3.74 Total: 9.65 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: -2.76 Total: -32.38 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.24 Total: -33.40 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -2.18 Total: -49.36 kcal Atomic # 14 Polarization: 16.30 SS G_CDS: -5.03 Total: 11.27 kcal Atomic # 16 Polarization: 53.98 SS G_CDS: -0.56 Total: 53.42 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -1.20 Total: -3.05 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.63 -10.10 -38.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451457648.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.702 kcal (2) G-P(sol) polarization free energy of solvation -28.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds