Wall clock time and date at job start Wed Apr 1 2020 02:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09004 * 110.00057 * 2 1 4 4 C 1.54338 * 109.77839 * 121.15756 * 2 1 3 5 5 C 1.55165 * 103.01828 * 97.49710 * 4 2 1 6 6 H 1.08999 * 111.00131 * 277.23190 * 5 4 2 7 7 O 1.42895 * 111.00453 * 153.38017 * 5 4 2 8 8 C 1.54911 * 101.57937 * 35.30765 * 5 4 2 9 9 N 1.47019 * 109.88195 * 238.89753 * 2 1 3 10 10 S 1.65598 * 125.64705 * 59.56352 * 9 2 1 11 11 O 1.42098 * 106.40015 * 211.43048 * 10 9 2 12 12 O 1.42093 * 106.40288 * 344.35294 * 10 9 2 13 13 C 1.76202 * 107.21943 * 97.89392 * 10 9 2 14 14 C 1.38638 * 119.76029 * 112.76713 * 13 10 9 15 15 C 1.37599 * 120.26368 * 179.97438 * 14 13 10 16 16 C 1.40742 * 119.76971 * 0.02562 * 15 14 13 17 17 C 1.41399 * 120.23849 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00562 * 206.06040 * 17 16 15 19 19 C 1.39950 * 119.99575 * 26.06007 * 17 16 15 20 20 N 1.30822 * 120.00064 * 12.51357 * 19 17 16 21 21 Si 1.86804 * 119.99852 * 192.50890 * 19 17 16 22 22 H 1.48502 * 109.46854 * 60.00137 * 21 19 17 23 23 H 1.48501 * 109.46801 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47170 * 300.00117 * 21 19 17 25 25 C 1.40670 * 119.52768 * 0.02562 * 16 15 14 26 26 C 1.37757 * 119.73244 * 359.71741 * 25 16 15 27 27 Cl 1.73601 * 119.89134 * 180.27340 * 26 25 16 28 28 H 1.09003 * 109.47731 * 181.09957 * 1 2 3 29 29 H 1.09004 * 109.47378 * 301.10001 * 1 2 3 30 30 H 1.09008 * 109.47223 * 61.09898 * 1 2 3 31 31 H 1.09000 * 110.85085 * 339.02943 * 4 2 1 32 32 H 1.09000 * 110.66908 * 215.87774 * 4 2 1 33 33 H 0.96695 * 114.00178 * 186.34414 * 7 5 4 34 34 H 1.08999 * 110.36236 * 204.14993 * 8 5 4 35 35 H 1.08999 * 110.36941 * 81.83045 * 8 5 4 36 36 H 1.07993 * 119.86727 * 359.97438 * 14 13 10 37 37 H 1.07998 * 120.11938 * 180.02562 * 15 14 13 38 38 H 0.97000 * 119.99910 * 180.02562 * 20 19 17 39 39 H 1.08007 * 120.13672 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0522 -0.7514 1.2428 5 6 2.3560 -2.1697 0.6917 6 1 1.4520 -2.7778 0.6582 7 8 3.3742 -2.8113 1.4621 8 6 2.8612 -1.8466 -0.7367 9 7 2.0299 -0.7142 -1.1838 10 16 1.7170 -0.3093 -2.7588 11 8 1.7093 -1.5265 -3.4920 12 8 0.6160 0.5884 -2.7312 13 6 3.0982 0.6151 -3.3439 14 6 3.9178 0.0806 -4.3261 15 6 4.9988 0.7937 -4.7910 16 6 5.2721 2.0704 -4.2655 17 6 6.3807 2.8117 -4.7356 18 1 6.8455 3.5503 -4.0994 19 6 6.8756 2.5881 -6.0255 20 7 6.1795 1.8836 -6.8802 21 14 8.5302 3.2957 -6.5266 22 1 9.5895 2.7553 -5.6372 23 1 8.8241 2.9192 -7.9327 24 1 8.4920 4.7754 -6.4086 25 6 4.4351 2.6034 -3.2684 26 6 3.3551 1.8744 -2.8214 27 17 2.3154 2.5312 -1.5962 28 1 -0.3635 -1.0275 0.0197 29 1 -0.3634 0.5308 0.8800 30 1 -0.3634 0.4967 -0.8997 31 1 1.2884 -0.7949 2.0193 32 1 2.9599 -0.2826 1.6226 33 1 3.6667 -3.6586 1.0995 34 1 2.7177 -2.7050 -1.3929 35 1 3.9123 -1.5589 -0.7113 36 1 3.7069 -0.8994 -4.7279 37 1 5.6355 0.3752 -5.5565 38 1 6.5227 1.7283 -7.7740 39 1 4.6354 3.5824 -2.8586 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451457648.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:47 Heat of formation + Delta-G solvation = -132.114492 kcal Electronic energy + Delta-G solvation = -26631.532636 eV Core-core repulsion = 22690.629501 eV Total energy + Delta-G solvation = -3940.903135 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.12709 -39.65524 -38.28776 -37.45573 -36.87513 -36.73058 -35.77746 -32.27675 -32.14202 -31.15956 -30.59384 -27.80877 -26.65265 -23.44249 -23.36063 -23.04066 -21.83447 -19.89295 -19.61513 -18.86387 -18.58810 -17.99668 -17.33726 -16.92178 -16.27600 -16.12144 -15.67045 -15.46688 -15.10650 -14.84258 -14.57080 -14.55001 -14.37015 -14.25380 -13.91696 -13.65184 -13.42762 -13.37112 -13.11850 -12.93855 -12.91952 -12.83737 -12.67395 -12.51828 -12.29100 -12.13877 -12.04766 -11.82580 -11.77651 -11.40243 -11.31042 -11.22565 -10.89948 -10.03872 -9.90795 -9.48888 -8.91380 -6.77605 -0.47773 0.27334 0.77582 1.11031 1.36248 1.43313 1.50883 2.05191 2.10514 2.42206 2.81891 3.22486 3.25830 3.37759 3.68101 3.79779 4.04813 4.13810 4.24340 4.38999 4.46009 4.56193 4.67632 4.73636 4.78350 4.87920 4.88716 4.93014 4.98256 5.06473 5.16139 5.19058 5.26049 5.31643 5.49908 5.53195 5.59737 5.76603 5.92864 6.34506 6.54874 6.60034 6.88777 8.01449 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.016840 B = 0.003695 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.356321 B = 7576.455128 C = 7785.726646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.137 3.863 3 H 0.075 0.925 4 C -0.112 4.112 5 C 0.107 3.893 6 H 0.093 0.907 7 O -0.568 6.568 8 C 0.078 3.922 9 N -1.001 6.001 10 S 2.730 3.270 11 O -0.998 6.998 12 O -0.973 6.973 13 C -0.806 4.806 14 C -0.017 4.017 15 C -0.198 4.198 16 C 0.117 3.883 17 C -0.448 4.448 18 H 0.099 0.901 19 C 0.032 3.968 20 N -0.795 5.795 21 Si 0.998 3.002 22 H -0.254 1.254 23 H -0.264 1.264 24 H -0.255 1.255 25 C -0.239 4.239 26 C 0.085 3.915 27 Cl -0.070 7.070 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.080 0.920 33 H 0.399 0.601 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.301 0.699 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.582 -5.536 11.372 12.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.031 3.969 3 H 0.093 0.907 4 C -0.150 4.150 5 C 0.046 3.954 6 H 0.111 0.889 7 O -0.375 6.375 8 C -0.048 4.048 9 N -0.840 5.840 10 S 2.826 3.174 11 O -0.989 6.989 12 O -0.964 6.964 13 C -0.898 4.898 14 C -0.038 4.038 15 C -0.218 4.218 16 C 0.113 3.887 17 C -0.474 4.474 18 H 0.117 0.883 19 C -0.188 4.188 20 N -0.417 5.417 21 Si 0.816 3.184 22 H -0.178 1.178 23 H -0.189 1.189 24 H -0.179 1.179 25 C -0.260 4.260 26 C 0.056 3.944 27 Cl -0.041 7.041 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.128 0.872 32 H 0.098 0.902 33 H 0.249 0.751 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.113 0.887 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.550 -5.251 11.039 12.729 hybrid contribution 1.269 0.332 -1.041 1.675 sum -2.281 -4.919 9.998 11.373 Atomic orbital electron populations 1.22551 0.94082 1.03426 1.04416 1.21688 0.94972 0.96536 0.83663 0.90726 1.22695 1.02809 0.93368 0.96175 1.22868 0.90762 0.94255 0.87471 0.88949 1.86470 1.57853 1.40575 1.52646 1.22921 0.95220 0.88544 0.98114 1.58413 1.64431 1.39985 1.21210 1.00267 0.73412 0.72480 0.71250 1.93438 1.87810 1.46526 1.71122 1.93482 1.50710 1.66071 1.86112 1.29641 1.29556 1.10249 1.20369 1.20462 0.92770 0.98084 0.92445 1.21533 1.00223 0.95409 1.04629 1.18076 0.90693 0.91227 0.88735 1.20283 1.10296 1.17552 0.99303 0.88313 1.27089 1.02538 0.93672 0.95482 1.69814 1.37528 1.27889 1.06484 0.84993 0.75408 0.79644 0.78333 1.17778 1.18852 1.17897 1.21131 0.97747 1.00914 1.06243 1.20123 0.91518 0.92412 0.90305 1.98303 1.66435 1.86179 1.53212 0.91219 0.89041 0.91705 0.87205 0.90181 0.75076 0.89500 0.91274 0.85898 0.85846 0.88705 0.86103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.50 9.07 71.98 0.65 -3.84 16 2 C 0.14 3.59 3.20 45.34 0.14 3.74 16 3 H 0.07 2.14 5.06 -2.38 -0.01 2.13 16 4 C -0.11 -2.26 6.22 31.79 0.20 -2.06 16 5 C 0.11 2.08 4.43 31.99 0.14 2.22 16 6 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 7 O -0.57 -10.20 13.47 -148.98 -2.01 -12.21 16 8 C 0.08 1.97 6.89 86.86 0.60 2.57 16 9 N -1.00 -31.06 3.39 -484.27 -1.64 -32.70 16 10 S 2.73 108.57 5.21 -56.49 -0.29 108.27 16 11 O -1.00 -42.92 16.41 -128.00 -2.10 -45.02 16 12 O -0.97 -40.96 13.37 -128.00 -1.71 -42.67 16 13 C -0.81 -36.46 5.94 22.48 0.13 -36.33 16 14 C -0.02 -0.83 9.52 22.21 0.21 -0.61 16 15 C -0.20 -9.95 8.68 22.73 0.20 -9.75 16 16 C 0.12 5.89 5.58 -21.30 -0.12 5.77 16 17 C -0.45 -21.40 9.07 23.46 0.21 -21.19 16 18 H 0.10 4.38 7.88 -2.91 -0.02 4.35 16 19 C 0.03 1.42 5.24 85.26 0.45 1.86 16 20 N -0.79 -37.17 10.75 21.83 0.23 -36.93 16 21 Si 1.00 32.90 29.58 68.60 2.03 34.93 16 22 H -0.25 -8.14 7.11 99.48 0.71 -7.43 16 23 H -0.26 -8.28 7.11 99.48 0.71 -7.58 16 24 H -0.26 -8.17 7.11 99.48 0.71 -7.46 16 25 C -0.24 -11.33 9.57 22.75 0.22 -11.11 16 26 C 0.08 3.80 6.29 22.28 0.14 3.94 16 27 Cl -0.07 -2.66 23.21 -2.72 -0.06 -2.72 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 29 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.06 1.96 5.71 -2.38 -0.01 1.95 16 31 H 0.11 1.67 7.83 -2.39 -0.02 1.66 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.40 3.81 9.11 -74.06 -0.67 3.14 16 34 H 0.09 2.10 7.84 -2.39 -0.02 2.08 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.12 5.46 7.31 -2.91 -0.02 5.44 16 37 H 0.12 6.28 6.07 -2.91 -0.02 6.26 16 38 H 0.30 12.54 8.30 -92.71 -0.77 11.77 16 39 H 0.12 5.30 8.06 -2.91 -0.02 5.27 16 Total: -1.00 -62.25 340.28 -1.95 -64.19 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: 0.43 Total: 29.64 kcal Atomic # 6 Polarization: -67.97 SS G_CDS: 3.18 Total: -64.79 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -1.40 Total: -69.63 kcal Atomic # 8 Polarization: -94.07 SS G_CDS: -5.82 Total: -99.89 kcal Atomic # 14 Polarization: 32.90 SS G_CDS: 2.03 Total: 34.93 kcal Atomic # 16 Polarization: 108.57 SS G_CDS: -0.29 Total: 108.27 kcal Atomic # 17 Polarization: -2.66 SS G_CDS: -0.06 Total: -2.72 kcal Total: -62.25 -1.95 -64.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451457648.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.923 kcal (2) G-P(sol) polarization free energy of solvation -62.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds