Wall clock time and date at job start Wed Apr 1 2020 03:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42894 * 114.00158 * 2 1 4 4 C 1.52998 * 109.47032 * 179.97438 * 3 2 1 5 5 H 1.09003 * 112.77853 * 195.78320 * 4 3 2 6 6 C 1.53754 * 113.55574 * 326.64293 * 4 3 2 7 7 C 1.53494 * 83.25762 * 140.98590 * 6 4 3 8 8 N 1.47061 * 87.98752 * 333.76348 * 7 6 4 9 9 S 1.65598 * 136.05679 * 207.08592 * 8 7 6 10 10 O 1.42099 * 106.40269 * 203.53829 * 9 8 7 11 11 O 1.42100 * 106.40553 * 336.46152 * 9 8 7 12 12 C 1.76209 * 107.21656 * 90.00167 * 9 8 7 13 13 C 1.38632 * 119.75620 * 115.00352 * 12 9 8 14 14 C 1.37600 * 120.26169 * 180.02562 * 13 12 9 15 15 C 1.40737 * 119.77203 * 359.96671 * 14 13 12 16 16 C 1.41403 * 120.24099 * 179.97438 * 15 14 13 17 17 H 1.07991 * 119.99949 * 204.40195 * 16 15 14 18 18 C 1.39941 * 119.99360 * 24.40307 * 16 15 14 19 19 N 1.30827 * 120.00304 * 17.86186 * 18 16 15 20 20 Si 1.86801 * 119.99504 * 197.85694 * 18 16 15 21 21 H 1.48501 * 109.47342 * 60.00499 * 20 18 16 22 22 H 1.48508 * 109.47074 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47455 * 300.00099 * 20 18 16 24 24 C 1.40682 * 119.52350 * 0.02562 * 15 14 13 25 25 C 1.37758 * 119.73161 * 359.76543 * 24 15 14 26 26 Cl 1.73595 * 119.88551 * 180.22700 * 25 24 15 27 27 H 1.09003 * 109.46551 * 59.99771 * 1 2 3 28 28 H 1.08997 * 109.47067 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47151 * 299.99911 * 1 2 3 30 30 H 1.09001 * 109.47244 * 60.00112 * 3 2 1 31 31 H 1.08998 * 109.47371 * 299.99779 * 3 2 1 32 32 H 1.08996 * 114.39271 * 27.41867 * 6 4 3 33 33 H 1.09003 * 114.26256 * 254.54467 * 6 4 3 34 34 H 1.09004 * 113.46260 * 218.98051 * 7 6 4 35 35 H 1.09002 * 113.46675 * 88.54922 * 7 6 4 36 36 H 1.08003 * 119.86875 * 359.97287 * 13 12 9 37 37 H 1.07998 * 120.11458 * 179.97438 * 14 13 12 38 38 H 0.97001 * 119.99325 * 179.97438 * 19 18 16 39 39 H 1.07999 * 120.13064 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 4.0325 2.1153 0.2740 6 6 4.0547 -0.0374 0.7761 7 6 5.0661 -0.1121 -0.3761 8 7 4.0748 0.5698 -1.2217 9 16 3.7245 0.6262 -2.8392 10 8 3.0398 1.8518 -3.0590 11 8 4.9193 0.2703 -3.5212 12 6 2.5633 -0.6581 -3.1665 13 6 1.2809 -0.3363 -3.5836 14 6 0.3656 -1.3308 -3.8416 15 6 0.7352 -2.6793 -3.6814 16 6 -0.1977 -3.7093 -3.9432 17 1 -0.0839 -4.6737 -3.4709 18 6 -1.2682 -3.4786 -4.8145 19 7 -1.2292 -2.4693 -5.6460 20 14 -2.7528 -4.6121 -4.7903 21 1 -3.3751 -4.5842 -3.4423 22 1 -3.7404 -4.1560 -5.8014 23 1 -2.3232 -5.9976 -5.1087 24 6 2.0390 -2.9953 -3.2579 25 6 2.9405 -1.9838 -3.0094 26 17 4.5522 -2.3693 -2.4924 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.3585 -0.8752 0.8146 33 1 4.4963 0.2007 1.7438 34 1 5.2836 -1.1307 -0.6974 35 1 5.9667 0.4769 -0.2020 36 1 0.9990 0.6991 -3.7056 37 1 -0.6328 -1.0774 -4.1659 38 1 -1.9712 -2.3098 -6.2501 39 1 2.3331 -4.0268 -3.1322 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451577829.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:41 Heat of formation + Delta-G solvation = -68.744638 kcal Electronic energy + Delta-G solvation = -27286.064707 eV Core-core repulsion = 23347.909496 eV Total energy + Delta-G solvation = -3938.155211 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.46924 -37.80309 -36.93615 -36.42268 -35.69151 -35.06624 -33.99896 -30.39717 -29.32374 -29.29721 -28.13677 -25.97568 -25.86740 -22.92053 -21.65207 -21.44419 -20.71390 -18.24082 -17.78609 -17.38689 -16.48184 -16.07118 -15.95508 -15.60402 -15.31944 -14.99920 -14.50435 -14.05618 -13.73876 -13.47157 -13.38983 -13.02070 -12.76306 -12.51097 -12.26315 -12.22844 -11.95325 -11.72997 -11.66308 -11.48160 -11.35913 -11.29350 -11.18453 -11.07832 -10.75006 -10.61021 -10.46855 -10.33244 -10.07087 -9.93213 -9.54658 -9.49324 -9.36923 -8.68751 -8.06735 -7.62269 -7.21987 -4.89083 1.16989 2.14116 2.68891 2.83500 2.85981 2.87793 2.94989 3.57907 3.61879 3.98008 4.14615 4.53202 4.62759 4.85656 5.02454 5.14218 5.25722 5.40426 5.41784 5.58817 5.60774 5.68306 5.82361 5.84044 5.95827 6.01903 6.07397 6.32378 6.50695 6.58217 6.62891 6.73564 6.82012 6.87292 7.04375 7.20973 7.43416 7.46302 7.61549 7.79430 8.19361 8.39329 8.48308 9.69245 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.014713 B = 0.004621 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.675319 B = 6058.381553 C = 6558.950015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.369 6.369 3 C 0.039 3.961 4 C 0.158 3.842 5 H 0.100 0.900 6 C -0.140 4.140 7 C 0.122 3.878 8 N -1.032 6.032 9 S 2.716 3.284 10 O -0.984 6.984 11 O -0.968 6.968 12 C -0.770 4.770 13 C -0.004 4.004 14 C -0.179 4.179 15 C 0.146 3.854 16 C -0.429 4.429 17 H 0.089 0.911 18 C 0.072 3.928 19 N -0.762 5.762 20 Si 0.919 3.081 21 H -0.259 1.259 22 H -0.274 1.274 23 H -0.260 1.260 24 C -0.223 4.223 25 C 0.099 3.901 26 Cl -0.103 7.103 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.033 0.967 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.110 0.890 37 H 0.125 0.875 38 H 0.291 0.709 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.233 3.581 11.141 11.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.287 6.287 3 C -0.039 4.039 4 C 0.052 3.948 5 H 0.118 0.882 6 C -0.179 4.179 7 C -0.004 4.004 8 N -0.869 5.869 9 S 2.816 3.184 10 O -0.976 6.976 11 O -0.959 6.959 12 C -0.865 4.865 13 C -0.024 4.024 14 C -0.200 4.200 15 C 0.142 3.858 16 C -0.456 4.456 17 H 0.107 0.893 18 C -0.151 4.151 19 N -0.384 5.384 20 Si 0.742 3.258 21 H -0.183 1.183 22 H -0.198 1.198 23 H -0.185 1.185 24 C -0.244 4.244 25 C 0.071 3.929 26 Cl -0.074 7.074 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.127 0.873 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.128 0.872 37 H 0.143 0.857 38 H 0.103 0.897 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.706 4.139 10.122 11.266 hybrid contribution -1.243 -0.780 -0.110 1.472 sum 1.463 3.359 10.012 10.661 Atomic orbital electron populations 1.22704 0.81154 1.02974 0.99334 1.87961 1.19368 1.26142 1.95279 1.22752 0.93581 0.86202 1.01322 1.22166 0.92174 0.97295 0.83187 0.88198 1.23521 0.98790 0.99167 0.96422 1.22475 0.91611 0.98200 0.88119 1.60194 1.44570 1.60810 1.21324 1.00608 0.73624 0.73762 0.70394 1.93445 1.76088 1.43977 1.84051 1.93529 1.46848 1.85102 1.70408 1.29008 1.14340 1.09213 1.33980 1.20173 0.90557 0.98398 0.93302 1.21336 0.99600 0.91991 1.07036 1.17673 0.89690 0.93076 0.85321 1.19884 1.05545 0.99319 1.20836 0.89254 1.26142 0.99728 0.95891 0.93291 1.69811 1.30957 1.25123 1.12484 0.86163 0.79467 0.80617 0.79557 1.18289 1.19842 1.18464 1.20888 0.93534 0.96527 1.13480 1.19915 0.83191 0.93322 0.96452 1.98299 1.25357 1.94694 1.89043 0.93891 0.89508 0.94892 0.92245 0.91835 0.87343 0.90640 0.90133 0.90766 0.87177 0.85696 0.89722 0.87262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.37 -5.83 9.17 -35.23 -0.32 -6.16 16 3 C 0.04 0.54 6.18 37.16 0.23 0.77 16 4 C 0.16 2.08 4.65 -72.27 -0.34 1.74 16 5 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 6 C -0.14 -1.63 7.85 -26.08 -0.20 -1.84 16 7 C 0.12 1.66 8.31 -8.52 -0.07 1.59 16 8 N -1.03 -17.31 3.93 -117.77 -0.46 -17.77 16 9 S 2.72 57.46 5.48 -107.50 -0.59 56.87 16 10 O -0.98 -21.98 16.26 -57.17 -0.93 -22.91 16 11 O -0.97 -22.48 16.45 -57.17 -0.94 -23.42 16 12 C -0.77 -17.54 5.93 -39.26 -0.23 -17.77 16 13 C 0.00 -0.09 9.52 -39.67 -0.38 -0.47 16 14 C -0.18 -4.33 8.70 -38.87 -0.34 -4.67 16 15 C 0.15 3.59 5.57 -106.83 -0.60 3.00 16 16 C -0.43 -10.11 9.05 -37.74 -0.34 -10.45 16 17 H 0.09 1.99 7.91 -52.49 -0.42 1.57 16 18 C 0.07 1.61 5.14 -17.34 -0.09 1.52 16 19 N -0.76 -17.65 10.95 55.55 0.61 -17.04 16 20 Si 0.92 16.42 29.59 -169.99 -5.03 11.39 16 21 H -0.26 -4.57 7.11 56.52 0.40 -4.17 16 22 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 23 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 24 C -0.22 -5.24 9.57 -38.83 -0.37 -5.61 16 25 C 0.10 2.26 6.29 -39.58 -0.25 2.01 16 26 Cl -0.10 -2.04 23.50 -51.86 -1.22 -3.26 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 1.00 7.44 -51.93 -0.39 0.61 16 32 H 0.11 1.46 6.95 -51.93 -0.36 1.10 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.18 5.36 -51.93 -0.28 0.90 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.11 2.42 7.31 -52.48 -0.38 2.04 16 37 H 0.13 3.03 6.15 -52.49 -0.32 2.71 16 38 H 0.29 6.07 8.30 -40.82 -0.34 5.73 16 39 H 0.11 2.41 8.06 -52.49 -0.42 1.98 16 LS Contribution 348.89 15.07 5.26 5.26 Total: -1.00 -29.18 348.89 -10.16 -39.34 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -4.66 Total: 6.28 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: -1.86 Total: -28.58 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.15 Total: -34.81 kcal Atomic # 8 Polarization: -50.29 SS G_CDS: -2.19 Total: -52.49 kcal Atomic # 14 Polarization: 16.42 SS G_CDS: -5.03 Total: 11.39 kcal Atomic # 16 Polarization: 57.46 SS G_CDS: -0.59 Total: 56.87 kcal Atomic # 17 Polarization: -2.04 SS G_CDS: -1.22 Total: -3.26 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.18 -10.16 -39.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451577829.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.406 kcal (2) G-P(sol) polarization free energy of solvation -29.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds