Wall clock time and date at job start Wed Apr 1 2020 03:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42894 * 114.00158 * 2 1 4 4 C 1.52998 * 109.47032 * 179.97438 * 3 2 1 5 5 H 1.09003 * 112.77853 * 195.78320 * 4 3 2 6 6 C 1.53754 * 113.55574 * 326.64293 * 4 3 2 7 7 C 1.53494 * 83.25762 * 140.98590 * 6 4 3 8 8 N 1.47061 * 87.98752 * 333.76348 * 7 6 4 9 9 S 1.65598 * 136.05679 * 207.08592 * 8 7 6 10 10 O 1.42099 * 106.40269 * 203.53829 * 9 8 7 11 11 O 1.42100 * 106.40553 * 336.46152 * 9 8 7 12 12 C 1.76209 * 107.21656 * 90.00167 * 9 8 7 13 13 C 1.38632 * 119.75620 * 115.00352 * 12 9 8 14 14 C 1.37600 * 120.26169 * 180.02562 * 13 12 9 15 15 C 1.40737 * 119.77203 * 359.96671 * 14 13 12 16 16 C 1.41403 * 120.24099 * 179.97438 * 15 14 13 17 17 H 1.07991 * 119.99949 * 204.40195 * 16 15 14 18 18 C 1.39941 * 119.99360 * 24.40307 * 16 15 14 19 19 N 1.30827 * 120.00304 * 17.86186 * 18 16 15 20 20 Si 1.86801 * 119.99504 * 197.85694 * 18 16 15 21 21 H 1.48501 * 109.47342 * 60.00499 * 20 18 16 22 22 H 1.48508 * 109.47074 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47455 * 300.00099 * 20 18 16 24 24 C 1.40682 * 119.52350 * 0.02562 * 15 14 13 25 25 C 1.37758 * 119.73161 * 359.76543 * 24 15 14 26 26 Cl 1.73595 * 119.88551 * 180.22700 * 25 24 15 27 27 H 1.09003 * 109.46551 * 59.99771 * 1 2 3 28 28 H 1.08997 * 109.47067 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47151 * 299.99911 * 1 2 3 30 30 H 1.09001 * 109.47244 * 60.00112 * 3 2 1 31 31 H 1.08998 * 109.47371 * 299.99779 * 3 2 1 32 32 H 1.08996 * 114.39271 * 27.41867 * 6 4 3 33 33 H 1.09003 * 114.26256 * 254.54467 * 6 4 3 34 34 H 1.09004 * 113.46260 * 218.98051 * 7 6 4 35 35 H 1.09002 * 113.46675 * 88.54922 * 7 6 4 36 36 H 1.08003 * 119.86875 * 359.97287 * 13 12 9 37 37 H 1.07998 * 120.11458 * 179.97438 * 14 13 12 38 38 H 0.97001 * 119.99325 * 179.97438 * 19 18 16 39 39 H 1.07999 * 120.13064 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 4.0325 2.1153 0.2740 6 6 4.0547 -0.0374 0.7761 7 6 5.0661 -0.1121 -0.3761 8 7 4.0748 0.5698 -1.2217 9 16 3.7245 0.6262 -2.8392 10 8 3.0398 1.8518 -3.0590 11 8 4.9193 0.2703 -3.5212 12 6 2.5633 -0.6581 -3.1665 13 6 1.2809 -0.3363 -3.5836 14 6 0.3656 -1.3308 -3.8416 15 6 0.7352 -2.6793 -3.6814 16 6 -0.1977 -3.7093 -3.9432 17 1 -0.0839 -4.6737 -3.4709 18 6 -1.2682 -3.4786 -4.8145 19 7 -1.2292 -2.4693 -5.6460 20 14 -2.7528 -4.6121 -4.7903 21 1 -3.3751 -4.5842 -3.4423 22 1 -3.7404 -4.1560 -5.8014 23 1 -2.3232 -5.9976 -5.1087 24 6 2.0390 -2.9953 -3.2579 25 6 2.9405 -1.9838 -3.0094 26 17 4.5522 -2.3693 -2.4924 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.3585 -0.8752 0.8146 33 1 4.4963 0.2007 1.7438 34 1 5.2836 -1.1307 -0.6974 35 1 5.9667 0.4769 -0.2020 36 1 0.9990 0.6991 -3.7056 37 1 -0.6328 -1.0774 -4.1659 38 1 -1.9712 -2.3098 -6.2501 39 1 2.3331 -4.0268 -3.1322 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451577829.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:40 Heat of formation + Delta-G solvation = -87.726121 kcal Electronic energy + Delta-G solvation = -27286.887806 eV Core-core repulsion = 23347.909496 eV Total energy + Delta-G solvation = -3938.978310 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.56427 -39.58690 -38.27063 -37.94770 -37.39638 -36.79777 -35.73894 -32.19327 -31.12592 -30.40499 -29.30033 -27.74257 -26.99605 -23.97861 -23.39970 -23.22684 -21.94423 -19.69047 -19.55230 -18.88541 -18.04578 -17.42334 -17.22037 -17.07580 -16.50392 -16.44717 -16.17193 -15.66141 -15.07985 -14.95909 -14.86316 -14.56218 -14.27669 -14.16974 -13.95296 -13.41499 -13.30595 -13.16568 -13.08444 -12.96841 -12.90578 -12.84633 -12.74458 -12.40448 -12.23678 -12.10511 -12.03648 -11.79238 -11.54238 -11.34441 -11.21050 -11.06717 -10.49542 -9.96773 -9.83997 -9.42236 -8.91870 -6.70637 -0.42073 0.36947 0.85408 1.17579 1.36383 1.43968 1.51091 2.09349 2.13810 2.45399 2.87581 2.93642 3.31929 3.45293 3.70227 3.89913 4.09560 4.15457 4.41907 4.45641 4.54586 4.57320 4.65408 4.68720 4.75011 4.77912 4.81143 4.93548 4.94164 5.02957 5.13487 5.21472 5.25481 5.40737 5.49926 5.62157 5.77542 5.80808 5.97973 6.34994 6.38592 6.59700 6.66232 8.03077 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.014713 B = 0.004621 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.675319 B = 6058.381553 C = 6558.950015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.032 3.968 4 C 0.152 3.848 5 H 0.139 0.861 6 C -0.120 4.120 7 C 0.113 3.887 8 N -1.042 6.042 9 S 2.732 3.268 10 O -1.003 7.003 11 O -0.995 6.995 12 C -0.783 4.783 13 C -0.008 4.008 14 C -0.193 4.193 15 C 0.122 3.878 16 C -0.452 4.452 17 H 0.096 0.904 18 C 0.036 3.964 19 N -0.793 5.793 20 Si 0.993 3.007 21 H -0.254 1.254 22 H -0.265 1.265 23 H -0.255 1.255 24 C -0.240 4.240 25 C 0.093 3.907 26 Cl -0.078 7.078 27 H 0.025 0.975 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.038 0.962 32 H 0.088 0.912 33 H 0.121 0.879 34 H 0.065 0.935 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.301 0.699 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.470 3.654 13.294 14.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.309 6.309 3 C -0.046 4.046 4 C 0.048 3.952 5 H 0.156 0.844 6 C -0.159 4.159 7 C -0.012 4.012 8 N -0.883 5.883 9 S 2.830 3.170 10 O -0.994 6.994 11 O -0.985 6.985 12 C -0.876 4.876 13 C -0.029 4.029 14 C -0.214 4.214 15 C 0.118 3.882 16 C -0.478 4.478 17 H 0.114 0.886 18 C -0.184 4.184 19 N -0.415 5.415 20 Si 0.812 3.188 21 H -0.178 1.178 22 H -0.189 1.189 23 H -0.179 1.179 24 C -0.261 4.261 25 C 0.064 3.936 26 Cl -0.049 7.049 27 H 0.044 0.956 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.116 0.884 31 H 0.056 0.944 32 H 0.106 0.894 33 H 0.139 0.861 34 H 0.083 0.917 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.112 0.888 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.942 4.205 12.263 13.294 hybrid contribution -1.206 -0.740 -0.692 1.575 sum 1.736 3.464 11.571 12.203 Atomic orbital electron populations 1.22726 0.80785 1.02662 1.00074 1.87933 1.20009 1.27570 1.95427 1.22950 0.94230 0.85501 1.01892 1.22707 0.91903 0.99480 0.81148 0.84404 1.23405 0.97369 0.97556 0.97611 1.22850 0.92737 0.97768 0.87798 1.59939 1.45949 1.61779 1.20605 0.99910 0.72646 0.72864 0.71550 1.93411 1.76415 1.44395 1.85170 1.93484 1.47386 1.85294 1.72374 1.29371 1.14420 1.10179 1.33672 1.20255 0.91003 0.98361 0.93242 1.21306 0.99537 0.92411 1.08117 1.17981 0.90556 0.93546 0.86076 1.20199 1.06523 0.99537 1.21581 0.88566 1.27034 1.01968 0.97248 0.92138 1.69848 1.32177 1.26530 1.12995 0.85067 0.75553 0.78397 0.79801 1.17751 1.18943 1.17920 1.21032 0.93617 0.97142 1.14300 1.20043 0.84350 0.93244 0.95919 1.98294 1.23348 1.94611 1.88694 0.95600 0.90442 0.91609 0.88424 0.94420 0.89389 0.86078 0.91658 0.87510 0.86902 0.86548 0.88791 0.86557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 11.01 113.37 1.25 2.20 16 2 O -0.39 -12.08 9.17 -148.98 -1.37 -13.44 16 3 C 0.03 0.82 6.18 71.98 0.44 1.26 16 4 C 0.15 3.54 4.65 41.87 0.19 3.73 16 5 H 0.14 2.20 8.14 -2.39 -0.02 2.18 16 6 C -0.12 -2.37 7.85 31.01 0.24 -2.12 16 7 C 0.11 2.76 8.31 83.17 0.69 3.45 16 8 N -1.04 -33.27 3.93 -526.50 -2.07 -35.33 16 9 S 2.73 115.84 5.48 -56.49 -0.31 115.53 16 10 O -1.00 -45.24 16.26 -128.00 -2.08 -47.32 16 11 O -0.99 -46.26 16.45 -128.00 -2.11 -48.37 16 12 C -0.78 -36.59 5.93 22.48 0.13 -36.45 16 13 C -0.01 -0.40 9.52 22.21 0.21 -0.19 16 14 C -0.19 -9.78 8.70 22.73 0.20 -9.58 16 15 C 0.12 6.23 5.57 -21.29 -0.12 6.11 16 16 C -0.45 -21.81 9.05 23.46 0.21 -21.60 16 17 H 0.10 4.35 7.91 -2.91 -0.02 4.32 16 18 C 0.04 1.63 5.14 85.26 0.44 2.07 16 19 N -0.79 -37.51 10.95 21.83 0.24 -37.27 16 20 Si 0.99 33.22 29.59 68.60 2.03 35.25 16 21 H -0.25 -8.23 7.11 99.48 0.71 -7.53 16 22 H -0.27 -8.44 7.11 99.48 0.71 -7.73 16 23 H -0.26 -8.30 7.11 99.48 0.71 -7.59 16 24 C -0.24 -11.60 9.57 22.75 0.22 -11.38 16 25 C 0.09 4.29 6.29 22.27 0.14 4.43 16 26 Cl -0.08 -3.11 23.50 -2.72 -0.06 -3.17 16 27 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.04 1.17 7.44 -2.39 -0.02 1.15 16 32 H 0.09 2.17 6.95 -2.39 -0.02 2.15 16 33 H 0.12 1.37 8.14 -2.39 -0.02 1.36 16 34 H 0.07 1.79 5.36 -2.39 -0.01 1.78 16 35 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.11 5.24 7.31 -2.91 -0.02 5.21 16 37 H 0.12 5.96 6.15 -2.91 -0.02 5.94 16 38 H 0.30 12.66 8.30 -92.71 -0.77 11.89 16 39 H 0.12 5.26 8.06 -2.91 -0.02 5.24 16 Total: -1.00 -65.43 348.89 -0.39 -65.82 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 1.08 Total: 26.39 kcal Atomic # 6 Polarization: -62.34 SS G_CDS: 4.25 Total: -58.08 kcal Atomic # 7 Polarization: -70.77 SS G_CDS: -1.83 Total: -72.60 kcal Atomic # 8 Polarization: -103.58 SS G_CDS: -5.55 Total: -109.13 kcal Atomic # 14 Polarization: 33.22 SS G_CDS: 2.03 Total: 35.25 kcal Atomic # 16 Polarization: 115.84 SS G_CDS: -0.31 Total: 115.53 kcal Atomic # 17 Polarization: -3.11 SS G_CDS: -0.06 Total: -3.17 kcal Total: -65.43 -0.39 -65.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451577829.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.910 kcal (2) G-P(sol) polarization free energy of solvation -65.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds