Wall clock time and date at job start Wed Apr 1 2020 03:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 119.99714 * 2 1 4 4 N 1.46507 * 109.46878 * 125.00086 * 3 2 1 5 5 C 1.46497 * 120.00227 * 274.99763 * 4 3 2 6 6 C 1.50697 * 109.47188 * 275.00385 * 5 4 3 7 7 H 1.07991 * 120.00143 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99837 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00023 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00187 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46749 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47104 * 119.99675 * 10 8 6 13 13 H 1.48498 * 109.47156 * 240.00223 * 10 8 6 14 14 S 1.65599 * 119.99694 * 94.99823 * 4 3 2 15 15 O 1.42100 * 106.40424 * 330.75142 * 14 4 3 16 16 O 1.42098 * 106.40335 * 197.82631 * 14 4 3 17 17 C 1.76206 * 107.21636 * 84.28701 * 14 4 3 18 18 C 1.38265 * 119.94973 * 344.78007 * 17 14 4 19 19 C 1.38133 * 120.06260 * 180.29723 * 18 17 14 20 20 C 1.38756 * 119.97459 * 359.72200 * 19 18 17 21 21 O 1.35894 * 120.05566 * 179.97438 * 20 19 18 22 22 C 1.42901 * 116.99510 * 0.02562 * 21 20 19 23 23 C 1.38693 * 119.90323 * 0.02562 * 20 19 18 24 24 C 1.38286 * 119.92830 * 359.97438 * 23 20 19 25 25 Cl 1.73595 * 119.98477 * 180.02562 * 24 23 20 26 26 H 1.07999 * 120.00498 * 359.97438 * 1 2 3 27 27 H 1.08009 * 119.99427 * 179.97438 * 1 2 3 28 28 H 1.07991 * 120.00273 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47054 * 5.00529 * 3 2 1 30 30 H 1.08991 * 109.47484 * 245.00276 * 3 2 1 31 31 H 1.09004 * 109.46862 * 35.00152 * 5 4 3 32 32 H 1.08994 * 109.47184 * 154.99654 * 5 4 3 33 33 H 0.97004 * 119.99996 * 179.97438 * 9 8 6 34 34 H 1.07994 * 119.97210 * 359.97438 * 18 17 14 35 35 H 1.08002 * 120.01383 * 179.69668 * 19 18 17 36 36 H 1.08997 * 109.47875 * 300.00006 * 22 21 20 37 37 H 1.09004 * 109.47021 * 60.00182 * 22 21 20 38 38 H 1.09005 * 109.47537 * 179.97438 * 22 21 20 39 39 H 1.07991 * 120.03942 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5285 1.7621 2.4523 6 6 2.5991 3.2646 2.5450 7 1 2.9553 3.8413 1.7044 8 6 2.2099 3.9028 3.7035 9 7 1.7766 3.2004 4.7275 10 14 2.2980 5.7651 3.8188 11 1 2.8165 6.3161 2.5409 12 1 0.9413 6.3097 4.0789 13 1 3.2071 6.1500 4.9282 14 16 4.5713 0.8759 0.9173 15 8 4.5738 -0.0777 -0.1362 16 8 5.0900 0.6050 2.2121 17 6 5.4440 2.2836 0.3161 18 6 4.7456 3.3686 -0.1806 19 6 5.4275 4.4709 -0.6581 20 6 6.8147 4.4918 -0.6341 21 8 7.4873 5.5751 -1.1040 22 6 6.7023 6.6576 -1.6079 23 6 7.5140 3.4049 -0.1308 24 6 6.8272 2.3035 0.3463 25 17 7.7010 0.9426 0.9771 26 1 -0.5401 0.9353 0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 1.3585 2.1316 0.0897 30 1 2.6212 1.4028 -0.9313 31 1 1.4984 1.4371 2.5983 32 1 3.1613 1.3204 3.2220 33 1 1.5031 3.6494 5.5427 34 1 3.6659 3.3522 -0.2000 35 1 4.8812 5.3159 -1.0504 36 1 6.0927 6.3075 -2.4409 37 1 6.0543 7.0355 -0.8170 38 1 7.3611 7.4559 -1.9498 39 1 8.5936 3.4190 -0.1107 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490112321.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:32 Heat of formation + Delta-G solvation = -59.937598 kcal Electronic energy + Delta-G solvation = -26631.730955 eV Core-core repulsion = 22693.957646 eV Total energy + Delta-G solvation = -3937.773310 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.32442 -37.86061 -36.75041 -36.46952 -36.27383 -35.20770 -33.25246 -31.99029 -31.23365 -30.33343 -27.64899 -27.52961 -25.01125 -23.25674 -22.80994 -22.07352 -19.75926 -18.87925 -18.29438 -17.18391 -17.08202 -16.44393 -16.12479 -16.03300 -15.76193 -15.23875 -14.66000 -14.53307 -14.26250 -14.08047 -13.64659 -13.41258 -13.34104 -13.05922 -12.52849 -12.43696 -12.21199 -12.02667 -11.73120 -11.48135 -11.37031 -11.30530 -11.20190 -11.11430 -11.08330 -10.92188 -10.78826 -10.54872 -10.43925 -10.11460 -9.83902 -9.10152 -8.95369 -8.66945 -8.53274 -8.19290 -6.15091 -4.21816 0.80360 0.98155 1.11125 1.84067 2.60148 3.02955 3.20067 3.27118 3.29242 3.34116 3.55590 4.17850 4.32018 4.54488 4.78069 4.82556 4.91355 5.07748 5.16997 5.20867 5.23674 5.28979 5.31502 5.39280 5.58973 5.62157 5.69122 5.93165 6.03837 6.07032 6.25471 6.32306 6.38649 6.95363 7.02702 7.04831 7.30261 7.37497 7.57587 7.80348 8.08563 8.80575 9.44110 10.93272 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.008195 B = 0.005999 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3415.784721 B = 4666.125949 C = 6189.558245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.161 4.161 3 C 0.150 3.850 4 N -0.978 5.978 5 C 0.243 3.757 6 C -0.544 4.544 7 H 0.062 0.938 8 C 0.068 3.932 9 N -0.885 5.885 10 Si 0.890 3.110 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.282 1.282 14 S 2.687 3.313 15 O -0.968 6.968 16 O -0.939 6.939 17 C -0.690 4.690 18 C 0.036 3.964 19 C -0.223 4.223 20 C 0.181 3.819 21 O -0.311 6.311 22 C 0.023 3.977 23 C -0.164 4.164 24 C 0.089 3.911 25 Cl -0.042 7.042 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.265 0.735 34 H 0.153 0.847 35 H 0.141 0.859 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.103 0.897 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.483 2.878 -13.275 14.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.181 4.181 3 C 0.024 3.976 4 N -0.818 5.818 5 C 0.122 3.878 6 C -0.583 4.583 7 H 0.080 0.920 8 C -0.136 4.136 9 N -0.523 5.523 10 Si 0.718 3.282 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.208 1.208 14 S 2.773 3.227 15 O -0.958 6.958 16 O -0.929 6.929 17 C -0.774 4.774 18 C 0.017 3.983 19 C -0.242 4.242 20 C 0.134 3.866 21 O -0.223 6.223 22 C -0.072 4.072 23 C -0.184 4.184 24 C 0.061 3.939 25 Cl -0.012 7.012 26 H 0.116 0.884 27 H 0.112 0.888 28 H 0.128 0.872 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.170 0.830 35 H 0.159 0.841 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.122 0.878 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.094 2.050 -12.875 14.391 hybrid contribution -0.060 1.977 0.073 1.979 sum 6.034 4.027 -12.801 14.714 Atomic orbital electron populations 1.23787 0.95753 1.01645 1.01166 1.23411 0.96306 0.99240 0.99125 1.20332 0.93295 0.96144 0.87831 1.57464 1.23619 1.82731 1.17983 1.19319 0.97280 0.94938 0.76279 1.21565 1.44932 0.91896 0.99938 0.91952 1.24907 0.94904 0.98295 0.95492 1.69933 1.42871 1.35482 1.04048 0.86574 0.77785 0.85638 0.78228 1.19805 1.20846 1.20795 1.02314 0.72947 0.73614 0.73781 1.93552 1.86787 1.56976 1.58448 1.93599 1.78429 1.82834 1.38036 1.31055 1.03668 1.23130 1.19544 1.20782 1.00468 0.89456 0.87609 1.21412 0.92936 1.01464 1.08383 1.18922 0.90517 0.86480 0.90664 1.86073 1.35973 1.25102 1.75197 1.23184 0.97187 0.87861 0.98971 1.20151 1.00866 0.91705 1.05683 1.19945 0.90334 0.89486 0.94145 1.98433 1.76227 1.41920 1.84652 0.88369 0.88797 0.87218 0.89101 0.90825 0.93647 0.92586 0.92559 0.82953 0.84117 0.92127 0.91957 0.87850 0.83454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.55 14.32 29.01 0.42 -2.14 16 2 C -0.16 -2.53 9.84 -36.03 -0.35 -2.88 16 3 C 0.15 2.46 4.75 -5.19 -0.02 2.44 16 4 N -0.98 -19.64 2.00 -116.95 -0.23 -19.87 16 5 C 0.24 5.86 5.41 -5.20 -0.03 5.83 16 6 C -0.54 -13.75 9.38 -34.44 -0.32 -14.07 16 7 H 0.06 1.47 6.10 -52.49 -0.32 1.15 16 8 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -24.92 13.29 55.43 0.74 -24.18 16 10 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 11 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 S 2.69 55.46 4.79 -107.50 -0.51 54.95 16 15 O -0.97 -20.07 17.20 -57.17 -0.98 -21.05 16 16 O -0.94 -22.18 15.14 -57.17 -0.87 -23.04 16 17 C -0.69 -12.85 5.84 -39.52 -0.23 -13.08 16 18 C 0.04 0.59 8.82 -39.61 -0.35 0.24 16 19 C -0.22 -3.14 9.04 -39.43 -0.36 -3.50 16 20 C 0.18 2.57 6.69 -39.22 -0.26 2.31 16 21 O -0.31 -3.77 10.50 -19.41 -0.20 -3.98 16 22 C 0.02 0.18 9.81 101.05 0.99 1.18 16 23 C -0.16 -2.47 9.77 -39.40 -0.38 -2.86 16 24 C 0.09 1.57 6.30 -39.52 -0.25 1.32 16 25 Cl -0.04 -0.72 26.79 -51.86 -1.39 -2.11 16 26 H 0.10 1.28 7.84 -52.49 -0.41 0.86 16 27 H 0.09 1.13 8.06 -52.48 -0.42 0.71 16 28 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.09 1.41 7.76 -51.93 -0.40 1.00 16 30 H 0.07 1.04 7.68 -51.93 -0.40 0.64 16 31 H 0.05 1.13 8.11 -51.93 -0.42 0.71 16 32 H 0.06 1.51 6.87 -51.93 -0.36 1.15 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.15 2.33 5.46 -52.49 -0.29 2.04 16 35 H 0.14 1.54 6.30 -52.49 -0.33 1.21 16 36 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 37 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.15 1.86 8.06 -52.49 -0.42 1.43 16 LS Contribution 358.06 15.07 5.40 5.40 Total: -1.00 -31.70 358.06 -8.88 -40.59 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -4.55 Total: 1.56 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -1.25 Total: -23.53 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 0.50 Total: -44.05 kcal Atomic # 8 Polarization: -46.01 SS G_CDS: -2.05 Total: -48.07 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 55.46 SS G_CDS: -0.51 Total: 54.95 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.39 Total: -2.11 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.70 -8.88 -40.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490112321.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.352 kcal (2) G-P(sol) polarization free energy of solvation -31.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds