Wall clock time and date at job start Wed Apr 1 2020 03:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 119.99714 * 2 1 4 4 N 1.46507 * 109.46878 * 125.00086 * 3 2 1 5 5 C 1.46497 * 120.00227 * 274.99763 * 4 3 2 6 6 C 1.50697 * 109.47188 * 275.00385 * 5 4 3 7 7 H 1.07991 * 120.00143 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99837 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00023 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00187 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46749 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47104 * 119.99675 * 10 8 6 13 13 H 1.48498 * 109.47156 * 240.00223 * 10 8 6 14 14 S 1.65599 * 119.99694 * 94.99823 * 4 3 2 15 15 O 1.42100 * 106.40424 * 330.75142 * 14 4 3 16 16 O 1.42098 * 106.40335 * 197.82631 * 14 4 3 17 17 C 1.76206 * 107.21636 * 84.28701 * 14 4 3 18 18 C 1.38265 * 119.94973 * 344.78007 * 17 14 4 19 19 C 1.38133 * 120.06260 * 180.29723 * 18 17 14 20 20 C 1.38756 * 119.97459 * 359.72200 * 19 18 17 21 21 O 1.35894 * 120.05566 * 179.97438 * 20 19 18 22 22 C 1.42901 * 116.99510 * 0.02562 * 21 20 19 23 23 C 1.38693 * 119.90323 * 0.02562 * 20 19 18 24 24 C 1.38286 * 119.92830 * 359.97438 * 23 20 19 25 25 Cl 1.73595 * 119.98477 * 180.02562 * 24 23 20 26 26 H 1.07999 * 120.00498 * 359.97438 * 1 2 3 27 27 H 1.08009 * 119.99427 * 179.97438 * 1 2 3 28 28 H 1.07991 * 120.00273 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47054 * 5.00529 * 3 2 1 30 30 H 1.08991 * 109.47484 * 245.00276 * 3 2 1 31 31 H 1.09004 * 109.46862 * 35.00152 * 5 4 3 32 32 H 1.08994 * 109.47184 * 154.99654 * 5 4 3 33 33 H 0.97004 * 119.99996 * 179.97438 * 9 8 6 34 34 H 1.07994 * 119.97210 * 359.97438 * 18 17 14 35 35 H 1.08002 * 120.01383 * 179.69668 * 19 18 17 36 36 H 1.08997 * 109.47875 * 300.00006 * 22 21 20 37 37 H 1.09004 * 109.47021 * 60.00182 * 22 21 20 38 38 H 1.09005 * 109.47537 * 179.97438 * 22 21 20 39 39 H 1.07991 * 120.03942 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5285 1.7621 2.4523 6 6 2.5991 3.2646 2.5450 7 1 2.9553 3.8413 1.7044 8 6 2.2099 3.9028 3.7035 9 7 1.7766 3.2004 4.7275 10 14 2.2980 5.7651 3.8188 11 1 2.8165 6.3161 2.5409 12 1 0.9413 6.3097 4.0789 13 1 3.2071 6.1500 4.9282 14 16 4.5713 0.8759 0.9173 15 8 4.5738 -0.0777 -0.1362 16 8 5.0900 0.6050 2.2121 17 6 5.4440 2.2836 0.3161 18 6 4.7456 3.3686 -0.1806 19 6 5.4275 4.4709 -0.6581 20 6 6.8147 4.4918 -0.6341 21 8 7.4873 5.5751 -1.1040 22 6 6.7023 6.6576 -1.6079 23 6 7.5140 3.4049 -0.1308 24 6 6.8272 2.3035 0.3463 25 17 7.7010 0.9426 0.9771 26 1 -0.5401 0.9353 0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 1.3585 2.1316 0.0897 30 1 2.6212 1.4028 -0.9313 31 1 1.4984 1.4371 2.5983 32 1 3.1613 1.3204 3.2220 33 1 1.5031 3.6494 5.5427 34 1 3.6659 3.3522 -0.2000 35 1 4.8812 5.3159 -1.0504 36 1 6.0927 6.3075 -2.4409 37 1 6.0543 7.0355 -0.8170 38 1 7.3611 7.4559 -1.9498 39 1 8.5936 3.4190 -0.1107 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490112321.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:31 Heat of formation + Delta-G solvation = -80.327215 kcal Electronic energy + Delta-G solvation = -26632.615115 eV Core-core repulsion = 22693.957646 eV Total energy + Delta-G solvation = -3938.657470 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.37746 -38.97757 -38.30290 -38.03612 -37.58480 -36.88254 -34.97322 -33.56937 -32.40107 -31.50242 -29.33935 -28.37067 -26.55893 -24.52936 -24.25740 -23.51555 -21.01132 -20.26880 -19.48228 -18.65926 -18.58747 -18.17813 -17.47355 -17.31193 -16.86501 -16.39034 -16.36607 -15.94397 -15.46189 -15.32491 -14.99202 -14.69459 -14.58437 -14.51918 -14.19333 -13.81542 -13.40409 -13.25123 -13.17471 -13.03012 -12.99426 -12.95722 -12.58813 -12.46055 -12.32649 -12.29205 -12.20038 -12.16827 -11.92833 -11.80874 -11.55940 -10.56372 -10.29887 -10.16558 -9.88499 -9.77248 -8.14545 -6.27623 -0.60811 -0.42047 -0.07575 0.57878 1.38449 1.42657 1.44822 1.54459 2.00461 2.13307 2.17647 2.43912 2.63953 3.18555 3.39940 3.60850 3.72594 3.88685 3.95371 4.09355 4.16317 4.33171 4.37357 4.39626 4.43593 4.55489 4.69471 4.75397 4.81468 4.92085 4.95425 5.11111 5.20743 5.33250 5.45226 5.71660 5.79388 5.82406 6.01075 6.08892 6.10910 6.83580 7.42176 8.94478 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.008195 B = 0.005999 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3415.784721 B = 4666.125949 C = 6189.558245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.192 4.192 3 C 0.142 3.858 4 N -0.978 5.978 5 C 0.259 3.741 6 C -0.544 4.544 7 H 0.082 0.918 8 C 0.011 3.989 9 N -0.928 5.928 10 Si 0.952 3.048 11 H -0.249 1.249 12 H -0.278 1.278 13 H -0.291 1.291 14 S 2.690 3.310 15 O -0.978 6.978 16 O -0.981 6.981 17 C -0.713 4.713 18 C 0.025 3.975 19 C -0.216 4.216 20 C 0.191 3.809 21 O -0.314 6.314 22 C 0.008 3.992 23 C -0.165 4.165 24 C 0.070 3.930 25 Cl -0.053 7.053 26 H 0.109 0.891 27 H 0.113 0.887 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.032 0.968 32 H 0.018 0.982 33 H 0.264 0.736 34 H 0.161 0.839 35 H 0.178 0.822 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.130 0.870 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.368 5.935 -15.606 17.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.212 4.212 3 C 0.018 3.982 4 N -0.818 5.818 5 C 0.136 3.864 6 C -0.583 4.583 7 H 0.100 0.900 8 C -0.188 4.188 9 N -0.568 5.568 10 Si 0.777 3.223 11 H -0.173 1.173 12 H -0.204 1.204 13 H -0.217 1.217 14 S 2.781 3.219 15 O -0.968 6.968 16 O -0.972 6.972 17 C -0.801 4.801 18 C 0.006 3.994 19 C -0.235 4.235 20 C 0.143 3.857 21 O -0.226 6.226 22 C -0.085 4.085 23 C -0.185 4.185 24 C 0.041 3.959 25 Cl -0.023 7.023 26 H 0.127 0.873 27 H 0.131 0.869 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.114 0.886 31 H 0.050 0.950 32 H 0.036 0.964 33 H 0.073 0.927 34 H 0.179 0.821 35 H 0.195 0.805 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.148 0.852 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 5.958 5.078 -15.241 17.134 hybrid contribution 0.010 1.099 0.677 1.291 sum 5.967 6.177 -14.564 16.908 Atomic orbital electron populations 1.24046 0.95085 1.03104 0.97955 1.23374 0.97135 0.98613 1.02093 1.20634 0.93308 0.97005 0.87282 1.57259 1.24119 1.82793 1.17596 1.18840 0.95563 0.94580 0.77397 1.21960 1.43598 0.92404 1.00303 0.90030 1.25791 0.94818 1.02947 0.95284 1.70076 1.44522 1.37454 1.04756 0.85593 0.77743 0.80184 0.78798 1.17260 1.20351 1.21716 1.01782 0.72931 0.74198 0.72949 1.93524 1.86933 1.58212 1.58154 1.93541 1.79228 1.84132 1.40265 1.30630 1.04122 1.23114 1.22230 1.20990 1.01001 0.89588 0.87844 1.21777 0.93115 1.01544 1.07072 1.19010 0.90630 0.86734 0.89332 1.86100 1.36815 1.25124 1.74577 1.23607 0.98114 0.87190 0.99632 1.20401 1.02013 0.91200 1.04917 1.20128 0.90185 0.90215 0.95341 1.98422 1.76270 1.42691 1.84947 0.87259 0.86919 0.88239 0.87970 0.88632 0.95023 0.96427 0.92684 0.82148 0.80450 0.90378 0.91422 0.85198 0.81411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.27 14.32 67.78 0.97 -3.30 16 2 C -0.19 -5.98 9.84 25.64 0.25 -5.73 16 3 C 0.14 4.58 4.75 85.63 0.41 4.98 16 4 N -0.98 -39.87 2.00 -523.92 -1.05 -40.92 16 5 C 0.26 12.86 5.41 85.63 0.46 13.32 16 6 C -0.54 -27.34 9.38 25.60 0.24 -27.10 16 7 H 0.08 3.69 6.10 -2.92 -0.02 3.67 16 8 C 0.01 0.59 5.46 84.65 0.46 1.05 16 9 N -0.93 -53.33 13.29 21.45 0.28 -53.05 16 10 Si 0.95 40.68 29.54 68.60 2.03 42.70 16 11 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 12 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 13 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 14 S 2.69 114.13 4.79 -56.49 -0.27 113.86 16 15 O -0.98 -41.62 17.20 -128.00 -2.20 -43.82 16 16 O -0.98 -48.83 15.14 -128.00 -1.94 -50.76 16 17 C -0.71 -26.30 5.84 22.31 0.13 -26.17 16 18 C 0.02 0.76 8.82 22.25 0.20 0.96 16 19 C -0.22 -5.31 9.04 22.37 0.20 -5.11 16 20 C 0.19 4.79 6.69 22.50 0.15 4.94 16 21 O -0.31 -6.35 10.50 -92.36 -0.97 -7.32 16 22 C 0.01 0.09 9.81 113.37 1.11 1.21 16 23 C -0.17 -4.68 9.77 22.39 0.22 -4.47 16 24 C 0.07 2.42 6.30 22.31 0.14 2.56 16 25 Cl -0.05 -1.85 26.79 -2.72 -0.07 -1.92 16 26 H 0.11 2.60 7.84 -2.91 -0.02 2.58 16 27 H 0.11 2.48 8.06 -2.91 -0.02 2.46 16 28 H 0.10 3.26 8.06 -2.92 -0.02 3.24 16 29 H 0.10 3.02 7.76 -2.39 -0.02 3.00 16 30 H 0.10 2.60 7.68 -2.39 -0.02 2.59 16 31 H 0.03 1.63 8.11 -2.39 -0.02 1.61 16 32 H 0.02 1.01 6.87 -2.39 -0.02 0.99 16 33 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 34 H 0.16 4.54 5.46 -2.91 -0.02 4.53 16 35 H 0.18 2.94 6.30 -2.91 -0.02 2.92 16 36 H 0.08 0.66 7.66 -2.39 -0.02 0.64 16 37 H 0.07 0.74 7.66 -2.38 -0.02 0.72 16 38 H 0.13 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.17 3.89 8.06 -2.92 -0.02 3.87 16 Total: -1.00 -70.49 358.06 1.83 -68.66 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 1.08 Total: 15.41 kcal Atomic # 6 Polarization: -47.79 SS G_CDS: 4.95 Total: -42.84 kcal Atomic # 7 Polarization: -93.20 SS G_CDS: -0.76 Total: -93.97 kcal Atomic # 8 Polarization: -96.79 SS G_CDS: -5.11 Total: -101.90 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.70 kcal Atomic # 16 Polarization: 114.13 SS G_CDS: -0.27 Total: 113.86 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.07 Total: -1.92 kcal Total: -70.49 1.83 -68.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490112321.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.666 kcal (2) G-P(sol) polarization free energy of solvation -70.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds