Wall clock time and date at job start Wed Apr 1 2020 02:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.81529 * 2 1 4 4 C 1.54382 * 109.83053 * 239.11642 * 2 1 3 5 5 C 1.55527 * 102.14574 * 219.04992 * 4 2 1 6 6 H 1.09003 * 111.17973 * 276.20490 * 5 4 2 7 7 N 1.46503 * 111.10535 * 152.06499 * 5 4 2 8 8 S 1.65595 * 120.00095 * 153.41413 * 7 5 4 9 9 O 1.42104 * 106.40098 * 47.83335 * 8 7 5 10 10 O 1.42103 * 106.40212 * 180.74624 * 8 7 5 11 11 C 1.76192 * 107.22110 * 294.29093 * 8 7 5 12 12 C 1.38630 * 119.76080 * 115.21257 * 11 8 7 13 13 C 1.37603 * 120.26743 * 180.02562 * 12 11 8 14 14 C 1.40743 * 119.77040 * 359.97438 * 13 12 11 15 15 C 1.41395 * 120.23748 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00019 * 208.12134 * 15 14 13 17 17 C 1.39942 * 120.00302 * 28.12760 * 15 14 13 18 18 N 1.30824 * 119.99782 * 12.38649 * 17 15 14 19 19 Si 1.86798 * 120.00266 * 192.38951 * 17 15 14 20 20 H 1.48500 * 109.46870 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47000 * 119.99577 * 19 17 15 22 22 H 1.48494 * 109.47225 * 239.99939 * 19 17 15 23 23 C 1.40682 * 119.52448 * 359.97438 * 14 13 12 24 24 C 1.37754 * 119.72865 * 359.76956 * 23 14 13 25 25 Cl 1.73605 * 119.88892 * 180.22776 * 24 23 14 26 26 C 1.54948 * 100.95218 * 34.15254 * 5 4 2 27 27 O 1.43233 * 109.83285 * 120.88348 * 2 1 3 28 28 H 1.08997 * 109.47208 * 300.69892 * 1 2 3 29 29 H 1.08997 * 109.47642 * 60.70447 * 1 2 3 30 30 H 1.09005 * 109.46818 * 180.70163 * 1 2 3 31 31 H 1.08998 * 110.85005 * 337.22538 * 4 2 1 32 32 H 1.08999 * 110.84856 * 100.84292 * 4 2 1 33 33 H 0.97000 * 119.99539 * 333.42023 * 7 5 4 34 34 H 1.08005 * 119.86529 * 359.97438 * 12 11 8 35 35 H 1.07999 * 120.11675 * 179.97438 * 13 12 11 36 36 H 0.97007 * 119.99925 * 180.02562 * 18 17 15 37 37 H 1.07991 * 120.13386 * 180.02562 * 23 14 13 38 38 H 1.09000 * 110.31445 * 204.61576 * 26 5 4 39 39 H 1.09003 * 110.30959 * 82.44749 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8995 1.0255 0.0000 4 6 2.0537 -0.7454 -1.2464 5 6 3.2755 -1.5199 -0.6751 6 1 4.1641 -0.8892 -0.6485 7 7 3.5253 -2.7466 -1.4361 8 16 5.0515 -3.3861 -1.4983 9 8 5.5307 -3.4115 -0.1607 10 8 4.9679 -4.5453 -2.3159 11 6 6.0641 -2.2359 -2.3678 12 6 7.1081 -1.6037 -1.7103 13 6 7.9050 -0.7032 -2.3791 14 6 7.6578 -0.4247 -3.7364 15 6 8.4703 0.4994 -4.4331 16 1 8.0647 1.0539 -5.2664 17 6 9.7998 0.6953 -4.0430 18 7 10.3646 -0.1351 -3.2045 19 14 10.7681 2.1425 -4.7193 20 1 9.9079 2.9255 -5.6424 21 1 11.2097 3.0100 -3.5979 22 1 11.9565 1.6421 -5.4557 23 6 6.5966 -1.0722 -4.3949 24 6 5.8147 -1.9741 -3.7073 25 17 4.5078 -2.7800 -4.5174 26 6 2.7766 -1.8425 0.7560 27 8 2.0160 -0.6916 1.1563 28 1 -0.3633 0.5246 0.8836 29 1 -0.3634 0.5028 -0.8962 30 1 -0.3633 -1.0277 0.0126 31 1 1.3018 -1.4347 -1.6306 32 1 2.3656 -0.0408 -2.0173 33 1 2.7967 -3.1840 -1.9037 34 1 7.2961 -1.8183 -0.6686 35 1 8.7174 -0.2118 -1.8644 36 1 11.2862 0.0010 -2.9338 37 1 6.3984 -0.8662 -5.4363 38 1 3.6225 -1.9893 1.4275 39 1 2.1431 -2.7295 0.7448 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566163875.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:54 Heat of formation + Delta-G solvation = -121.320874 kcal Electronic energy + Delta-G solvation = -26184.366362 eV Core-core repulsion = 22243.931274 eV Total energy + Delta-G solvation = -3940.435088 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.66187 -37.93573 -36.58936 -35.80863 -35.19698 -34.79770 -34.07486 -32.13389 -30.51078 -29.45659 -29.18499 -26.11238 -26.04927 -21.85662 -21.65703 -21.43406 -21.18246 -19.10345 -17.88143 -17.48875 -16.87524 -16.48734 -16.25913 -15.69231 -15.20791 -14.66972 -14.59332 -14.01273 -13.83051 -13.63158 -13.48483 -13.09149 -12.87552 -12.69338 -12.65776 -12.33885 -12.12957 -11.85998 -11.77477 -11.55649 -11.47338 -11.42776 -11.38580 -11.19716 -11.17730 -10.79992 -10.66014 -10.55538 -10.49866 -10.10602 -9.78170 -9.66980 -9.57300 -9.17750 -8.18132 -7.77008 -7.26358 -5.00494 1.10483 1.97242 2.54945 2.78132 2.79928 2.84155 2.88515 3.44082 3.56999 3.89210 4.07916 4.27129 4.50111 4.69856 4.83301 4.99211 5.09262 5.10395 5.20912 5.23034 5.47824 5.54249 5.62593 5.73444 5.84298 5.87545 5.98193 6.05583 6.22318 6.45791 6.49677 6.61332 6.69748 6.91651 6.96345 7.06527 7.19736 7.34636 7.52398 7.69613 8.10520 8.29610 8.36413 9.64399 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.012769 B = 0.003741 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.350744 B = 7482.220106 C = 8132.188354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.074 3.926 3 H 0.083 0.917 4 C -0.155 4.155 5 C 0.127 3.873 6 H 0.108 0.892 7 N -1.108 6.108 8 S 2.694 3.306 9 O -0.979 6.979 10 O -0.967 6.967 11 C -0.790 4.790 12 C -0.011 4.011 13 C -0.175 4.175 14 C 0.144 3.856 15 C -0.426 4.426 16 H 0.091 0.909 17 C 0.069 3.931 18 N -0.764 5.764 19 Si 0.922 3.078 20 H -0.256 1.256 21 H -0.266 1.266 22 H -0.269 1.269 23 C -0.221 4.221 24 C 0.092 3.908 25 Cl -0.102 7.102 26 C 0.035 3.965 27 O -0.377 6.377 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.413 0.587 34 H 0.118 0.882 35 H 0.129 0.871 36 H 0.292 0.708 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.999 2.374 2.500 11.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.016 3.984 3 H 0.101 0.899 4 C -0.194 4.194 5 C 0.018 3.982 6 H 0.126 0.874 7 N -0.864 5.864 8 S 2.791 3.209 9 O -0.969 6.969 10 O -0.957 6.957 11 C -0.884 4.884 12 C -0.031 4.031 13 C -0.196 4.196 14 C 0.140 3.860 15 C -0.453 4.453 16 H 0.109 0.891 17 C -0.154 4.154 18 N -0.386 5.386 19 Si 0.745 3.255 20 H -0.179 1.179 21 H -0.191 1.191 22 H -0.194 1.194 23 C -0.242 4.242 24 C 0.064 3.936 25 Cl -0.074 7.074 26 C -0.043 4.043 27 O -0.296 6.296 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.246 0.754 34 H 0.135 0.865 35 H 0.147 0.853 36 H 0.103 0.897 37 H 0.130 0.870 38 H 0.117 0.883 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.540 1.563 3.232 11.135 hybrid contribution 0.346 0.832 -1.286 1.570 sum -10.194 2.395 1.946 10.650 Atomic orbital electron populations 1.22138 0.94995 1.02501 1.02220 1.22689 0.94310 0.96601 0.84789 0.89893 1.23482 0.97346 1.00185 0.98371 1.22342 0.99627 0.85752 0.90431 0.87435 1.55649 1.28191 1.37602 1.65004 1.01364 0.72157 0.73836 0.73591 1.93495 1.79819 1.87045 1.36573 1.93563 1.85879 1.46538 1.69750 1.29086 1.21400 1.33144 1.04810 1.20323 0.91656 0.93140 0.97976 1.21454 1.01735 1.01920 0.94450 1.17753 0.88699 0.88103 0.91434 1.19993 0.94880 1.17583 1.12816 0.89064 1.26165 0.98542 0.96902 0.93757 1.69788 1.14201 1.31187 1.23412 0.86002 0.79396 0.80202 0.79866 1.17916 1.19119 1.19366 1.20981 1.01659 1.02444 0.99132 1.19980 0.89076 0.93836 0.90742 1.98323 1.49226 1.79363 1.80439 1.23934 0.95695 0.88758 0.95927 1.88449 1.70734 1.40653 1.29761 0.91999 0.91533 0.92265 0.89764 0.88998 0.75369 0.86459 0.85319 0.89698 0.87004 0.88315 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.44 37.16 0.35 -1.06 16 2 C 0.07 0.79 4.15 -26.01 -0.11 0.69 16 3 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.15 -1.65 6.22 -24.66 -0.15 -1.80 16 5 C 0.13 1.68 3.62 -65.56 -0.24 1.44 16 6 H 0.11 1.52 8.06 -51.93 -0.42 1.10 16 7 N -1.11 -15.83 5.45 -2.88 -0.02 -15.85 16 8 S 2.69 50.66 5.02 -107.50 -0.54 50.12 16 9 O -0.98 -19.93 16.69 -57.17 -0.95 -20.89 16 10 O -0.97 -20.30 16.46 -57.17 -0.94 -21.24 16 11 C -0.79 -16.66 5.89 -39.25 -0.23 -16.89 16 12 C -0.01 -0.23 9.52 -39.67 -0.38 -0.61 16 13 C -0.18 -4.10 8.66 -38.87 -0.34 -4.44 16 14 C 0.14 3.42 5.55 -106.83 -0.59 2.83 16 15 C -0.43 -9.77 9.06 -37.74 -0.34 -10.12 16 16 H 0.09 1.97 7.88 -52.49 -0.41 1.56 16 17 C 0.07 1.50 5.23 -17.34 -0.09 1.41 16 18 N -0.76 -17.34 10.89 55.55 0.60 -16.73 16 19 Si 0.92 16.11 29.58 -169.99 -5.03 11.08 16 20 H -0.26 -4.41 7.11 56.52 0.40 -4.01 16 21 H -0.27 -4.59 7.11 56.52 0.40 -4.18 16 22 H -0.27 -4.68 7.11 56.52 0.40 -4.27 16 23 C -0.22 -4.94 9.57 -38.84 -0.37 -5.31 16 24 C 0.09 1.95 6.29 -39.57 -0.25 1.70 16 25 Cl -0.10 -1.89 26.41 -51.86 -1.37 -3.26 16 26 C 0.04 0.46 7.48 38.19 0.29 0.75 16 27 O -0.38 -5.01 11.02 -35.23 -0.39 -5.40 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.79 7.71 -51.93 -0.40 0.39 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.41 4.99 8.72 -34.47 -0.30 4.69 16 34 H 0.12 2.41 7.31 -52.48 -0.38 2.02 16 35 H 0.13 3.05 6.23 -52.49 -0.33 2.72 16 36 H 0.29 5.91 8.30 -40.82 -0.34 5.58 16 37 H 0.11 2.33 8.06 -52.49 -0.42 1.91 16 38 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 352.76 15.07 5.32 5.32 Total: -1.00 -27.76 352.76 -10.53 -38.29 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -4.76 Total: 9.98 kcal Atomic # 6 Polarization: -28.97 SS G_CDS: -2.45 Total: -31.42 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.59 Total: -32.58 kcal Atomic # 8 Polarization: -45.24 SS G_CDS: -2.28 Total: -47.52 kcal Atomic # 14 Polarization: 16.11 SS G_CDS: -5.03 Total: 11.08 kcal Atomic # 16 Polarization: 50.66 SS G_CDS: -0.54 Total: 50.12 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -1.37 Total: -3.26 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -27.76 -10.53 -38.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566163875.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.033 kcal (2) G-P(sol) polarization free energy of solvation -27.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds