Wall clock time and date at job start Wed Apr 1 2020 02:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.81529 * 2 1 4 4 C 1.54382 * 109.83053 * 239.11642 * 2 1 3 5 5 C 1.55527 * 102.14574 * 219.04992 * 4 2 1 6 6 H 1.09003 * 111.17973 * 276.20490 * 5 4 2 7 7 N 1.46503 * 111.10535 * 152.06499 * 5 4 2 8 8 S 1.65595 * 120.00095 * 153.41413 * 7 5 4 9 9 O 1.42104 * 106.40098 * 47.83335 * 8 7 5 10 10 O 1.42103 * 106.40212 * 180.74624 * 8 7 5 11 11 C 1.76192 * 107.22110 * 294.29093 * 8 7 5 12 12 C 1.38630 * 119.76080 * 115.21257 * 11 8 7 13 13 C 1.37603 * 120.26743 * 180.02562 * 12 11 8 14 14 C 1.40743 * 119.77040 * 359.97438 * 13 12 11 15 15 C 1.41395 * 120.23748 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00019 * 208.12134 * 15 14 13 17 17 C 1.39942 * 120.00302 * 28.12760 * 15 14 13 18 18 N 1.30824 * 119.99782 * 12.38649 * 17 15 14 19 19 Si 1.86798 * 120.00266 * 192.38951 * 17 15 14 20 20 H 1.48500 * 109.46870 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47000 * 119.99577 * 19 17 15 22 22 H 1.48494 * 109.47225 * 239.99939 * 19 17 15 23 23 C 1.40682 * 119.52448 * 359.97438 * 14 13 12 24 24 C 1.37754 * 119.72865 * 359.76956 * 23 14 13 25 25 Cl 1.73605 * 119.88892 * 180.22776 * 24 23 14 26 26 C 1.54948 * 100.95218 * 34.15254 * 5 4 2 27 27 O 1.43233 * 109.83285 * 120.88348 * 2 1 3 28 28 H 1.08997 * 109.47208 * 300.69892 * 1 2 3 29 29 H 1.08997 * 109.47642 * 60.70447 * 1 2 3 30 30 H 1.09005 * 109.46818 * 180.70163 * 1 2 3 31 31 H 1.08998 * 110.85005 * 337.22538 * 4 2 1 32 32 H 1.08999 * 110.84856 * 100.84292 * 4 2 1 33 33 H 0.97000 * 119.99539 * 333.42023 * 7 5 4 34 34 H 1.08005 * 119.86529 * 359.97438 * 12 11 8 35 35 H 1.07999 * 120.11675 * 179.97438 * 13 12 11 36 36 H 0.97007 * 119.99925 * 180.02562 * 18 17 15 37 37 H 1.07991 * 120.13386 * 180.02562 * 23 14 13 38 38 H 1.09000 * 110.31445 * 204.61576 * 26 5 4 39 39 H 1.09003 * 110.30959 * 82.44749 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8995 1.0255 0.0000 4 6 2.0537 -0.7454 -1.2464 5 6 3.2755 -1.5199 -0.6751 6 1 4.1641 -0.8892 -0.6485 7 7 3.5253 -2.7466 -1.4361 8 16 5.0515 -3.3861 -1.4983 9 8 5.5307 -3.4115 -0.1607 10 8 4.9679 -4.5453 -2.3159 11 6 6.0641 -2.2359 -2.3678 12 6 7.1081 -1.6037 -1.7103 13 6 7.9050 -0.7032 -2.3791 14 6 7.6578 -0.4247 -3.7364 15 6 8.4703 0.4994 -4.4331 16 1 8.0647 1.0539 -5.2664 17 6 9.7998 0.6953 -4.0430 18 7 10.3646 -0.1351 -3.2045 19 14 10.7681 2.1425 -4.7193 20 1 9.9079 2.9255 -5.6424 21 1 11.2097 3.0100 -3.5979 22 1 11.9565 1.6421 -5.4557 23 6 6.5966 -1.0722 -4.3949 24 6 5.8147 -1.9741 -3.7073 25 17 4.5078 -2.7800 -4.5174 26 6 2.7766 -1.8425 0.7560 27 8 2.0160 -0.6916 1.1563 28 1 -0.3633 0.5246 0.8836 29 1 -0.3634 0.5028 -0.8962 30 1 -0.3633 -1.0277 0.0126 31 1 1.3018 -1.4347 -1.6306 32 1 2.3656 -0.0408 -2.0173 33 1 2.7967 -3.1840 -1.9037 34 1 7.2961 -1.8183 -0.6686 35 1 8.7174 -0.2118 -1.8644 36 1 11.2862 0.0010 -2.9338 37 1 6.3984 -0.8662 -5.4363 38 1 3.6225 -1.9893 1.4275 39 1 2.1431 -2.7295 0.7448 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566163875.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:53 Heat of formation + Delta-G solvation = -139.011652 kcal Electronic energy + Delta-G solvation = -26185.133492 eV Core-core repulsion = 22243.931274 eV Total energy + Delta-G solvation = -3941.202218 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.63246 -39.63495 -38.19678 -37.41339 -36.81272 -35.96027 -35.74018 -32.97970 -32.22453 -31.15746 -30.25859 -27.78203 -26.95477 -23.45032 -23.26005 -22.71528 -22.06986 -20.52587 -19.58191 -18.90090 -18.33941 -17.62285 -17.45974 -17.28628 -16.48009 -16.21262 -15.92224 -15.51681 -15.07387 -14.92963 -14.63897 -14.54429 -14.31440 -14.08859 -13.95208 -13.46691 -13.39268 -13.20229 -13.12410 -13.07350 -12.93248 -12.80708 -12.77488 -12.58150 -12.26590 -12.14928 -12.07427 -11.98091 -11.81947 -11.68259 -11.34375 -11.27090 -10.60119 -10.36554 -9.91142 -9.48918 -8.90072 -6.75101 -0.41573 0.28275 0.80119 1.15081 1.37699 1.41593 1.54755 2.07277 2.11936 2.42146 2.81708 2.93331 3.34026 3.43124 3.59324 3.85524 3.89777 4.03945 4.17393 4.22961 4.35112 4.49368 4.71744 4.76513 4.79780 4.81701 4.83127 4.90603 4.98818 5.01383 5.08926 5.21242 5.25666 5.34701 5.36563 5.58182 5.79688 5.95450 6.01287 6.13117 6.37301 6.57855 6.62253 8.04327 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.012769 B = 0.003741 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.350744 B = 7482.220106 C = 8132.188354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.067 3.933 3 H 0.087 0.913 4 C -0.146 4.146 5 C 0.118 3.882 6 H 0.095 0.905 7 N -1.091 6.091 8 S 2.718 3.282 9 O -0.995 6.995 10 O -0.987 6.987 11 C -0.799 4.799 12 C -0.015 4.015 13 C -0.195 4.195 14 C 0.121 3.879 15 C -0.451 4.451 16 H 0.098 0.902 17 C 0.033 3.967 18 N -0.797 5.797 19 Si 0.995 3.005 20 H -0.251 1.251 21 H -0.261 1.261 22 H -0.265 1.265 23 C -0.236 4.236 24 C 0.087 3.913 25 Cl -0.075 7.075 26 C 0.036 3.964 27 O -0.393 6.393 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.426 0.574 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.300 0.700 37 H 0.121 0.879 38 H 0.086 0.914 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.386 2.982 1.853 12.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.010 3.990 3 H 0.105 0.895 4 C -0.185 4.185 5 C 0.010 3.990 6 H 0.113 0.887 7 N -0.852 5.852 8 S 2.811 3.189 9 O -0.985 6.985 10 O -0.977 6.977 11 C -0.891 4.891 12 C -0.036 4.036 13 C -0.215 4.215 14 C 0.116 3.884 15 C -0.478 4.478 16 H 0.116 0.884 17 C -0.187 4.187 18 N -0.420 5.420 19 Si 0.814 3.186 20 H -0.174 1.174 21 H -0.185 1.185 22 H -0.190 1.190 23 C -0.257 4.257 24 C 0.059 3.941 25 Cl -0.046 7.046 26 C -0.043 4.043 27 O -0.312 6.312 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.263 0.737 34 H 0.143 0.857 35 H 0.136 0.864 36 H 0.112 0.888 37 H 0.139 0.861 38 H 0.104 0.896 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.934 2.169 2.569 12.399 hybrid contribution 0.659 0.578 -1.036 1.357 sum -11.275 2.747 1.533 11.705 Atomic orbital electron populations 1.22114 0.93251 1.02873 1.03163 1.22897 0.95696 0.96523 0.83915 0.89465 1.23494 0.96347 1.00248 0.98454 1.22477 1.00427 0.85186 0.90919 0.88716 1.55177 1.26742 1.38118 1.65115 1.00633 0.72601 0.72927 0.72710 1.93476 1.80749 1.87103 1.37143 1.93530 1.86475 1.47497 1.70208 1.29481 1.21637 1.32765 1.05247 1.20477 0.91745 0.92911 0.98429 1.21453 1.02187 1.03067 0.94814 1.18062 0.89627 0.88880 0.91785 1.20301 0.95784 1.18188 1.13526 0.88369 1.27032 0.98962 0.99048 0.93627 1.69827 1.15036 1.32711 1.24389 0.84940 0.77756 0.76668 0.79236 1.17375 1.18544 1.18962 1.21133 1.01880 1.02998 0.99672 1.20088 0.89560 0.93521 0.90926 1.98320 1.47704 1.78694 1.79923 1.23882 0.95667 0.89407 0.95301 1.88436 1.70837 1.40825 1.31147 0.92010 0.89704 0.92137 0.87884 0.88371 0.73666 0.85689 0.86373 0.88843 0.86118 0.89607 0.90466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.44 71.98 0.68 -1.66 16 2 C 0.07 1.31 4.15 31.06 0.13 1.43 16 3 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 4 C -0.15 -2.77 6.22 31.93 0.20 -2.57 16 5 C 0.12 2.97 3.62 46.53 0.17 3.14 16 6 H 0.09 2.65 8.06 -2.39 -0.02 2.63 16 7 N -1.09 -29.40 5.45 -163.02 -0.89 -30.28 16 8 S 2.72 100.10 5.02 -56.49 -0.28 99.82 16 9 O -0.99 -40.14 16.69 -128.00 -2.14 -42.27 16 10 O -0.99 -40.29 16.46 -128.00 -2.11 -42.39 16 11 C -0.80 -33.71 5.89 22.48 0.13 -33.58 16 12 C -0.02 -0.69 9.52 22.21 0.21 -0.48 16 13 C -0.19 -9.43 8.66 22.73 0.20 -9.23 16 14 C 0.12 5.85 5.55 -21.29 -0.12 5.73 16 15 C -0.45 -21.04 9.06 23.46 0.21 -20.82 16 16 H 0.10 4.27 7.88 -2.91 -0.02 4.24 16 17 C 0.03 1.43 5.23 85.26 0.45 1.88 16 18 N -0.80 -36.84 10.89 21.83 0.24 -36.60 16 19 Si 0.99 32.57 29.58 68.60 2.03 34.60 16 20 H -0.25 -7.91 7.11 99.48 0.71 -7.21 16 21 H -0.26 -8.25 7.11 99.48 0.71 -7.55 16 22 H -0.26 -8.46 7.11 99.48 0.71 -7.75 16 23 C -0.24 -10.62 9.57 22.75 0.22 -10.40 16 24 C 0.09 3.68 6.29 22.28 0.14 3.82 16 25 Cl -0.08 -2.66 26.41 -2.72 -0.07 -2.74 16 26 C 0.04 0.90 7.48 72.65 0.54 1.44 16 27 O -0.39 -9.94 11.02 -148.98 -1.64 -11.58 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.10 1.57 7.71 -2.39 -0.02 1.55 16 32 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.43 9.25 8.72 -96.75 -0.84 8.41 16 34 H 0.13 5.27 7.31 -2.91 -0.02 5.25 16 35 H 0.12 5.85 6.23 -2.91 -0.02 5.83 16 36 H 0.30 12.33 8.30 -92.70 -0.77 11.56 16 37 H 0.12 5.05 8.06 -2.92 -0.02 5.02 16 38 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -59.23 352.76 -1.45 -60.68 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: 0.25 Total: 32.08 kcal Atomic # 6 Polarization: -64.46 SS G_CDS: 3.16 Total: -61.31 kcal Atomic # 7 Polarization: -66.24 SS G_CDS: -0.65 Total: -66.89 kcal Atomic # 8 Polarization: -90.37 SS G_CDS: -5.88 Total: -96.25 kcal Atomic # 14 Polarization: 32.57 SS G_CDS: 2.03 Total: 34.60 kcal Atomic # 16 Polarization: 100.10 SS G_CDS: -0.28 Total: 99.82 kcal Atomic # 17 Polarization: -2.66 SS G_CDS: -0.07 Total: -2.74 kcal Total: -59.23 -1.45 -60.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566163875.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.328 kcal (2) G-P(sol) polarization free energy of solvation -59.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds