Wall clock time and date at job start Wed Apr 1 2020 03:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47364 * 2 1 4 4 C 1.53000 * 109.46679 * 240.00293 * 2 1 3 5 5 S 1.81404 * 109.47227 * 65.00334 * 4 2 1 6 6 C 1.81406 * 101.91954 * 179.97438 * 5 4 2 7 7 O 1.42095 * 108.57553 * 294.48398 * 5 4 2 8 8 O 1.42100 * 108.58040 * 65.51213 * 5 4 2 9 9 C 1.50699 * 109.47303 * 120.00693 * 2 1 3 10 10 O 1.21277 * 120.00129 * 119.99463 * 9 2 1 11 11 N 1.34782 * 119.99614 * 299.99807 * 9 2 1 12 12 C 1.39148 * 119.99768 * 174.15021 * 11 9 2 13 13 C 1.38603 * 120.21188 * 335.18984 * 12 11 9 14 14 C 1.38192 * 120.17069 * 179.72042 * 13 12 11 15 15 C 1.39006 * 120.60209 * 0.55820 * 14 13 12 16 16 Cl 1.73606 * 119.78828 * 179.74616 * 15 14 13 17 17 C 1.37541 * 120.42190 * 359.71589 * 15 14 13 18 18 C 1.40748 * 119.80729 * 0.02562 * 17 15 14 19 19 C 1.41065 * 120.28599 * 179.97438 * 18 17 15 20 20 H 1.08004 * 119.99656 * 184.22052 * 19 18 17 21 21 C 1.39949 * 120.00474 * 4.21437 * 19 18 17 22 22 N 1.30851 * 119.99887 * 324.59334 * 21 19 18 23 23 Si 1.86804 * 120.00002 * 144.59547 * 21 19 18 24 24 H 1.48495 * 109.47213 * 95.00075 * 23 21 19 25 25 H 1.48501 * 109.46967 * 215.00014 * 23 21 19 26 26 H 1.48497 * 109.46938 * 334.99754 * 23 21 19 27 27 H 1.08997 * 109.46634 * 300.00077 * 1 2 3 28 28 H 1.08998 * 109.46908 * 59.99342 * 1 2 3 29 29 H 1.08995 * 109.47364 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47167 * 184.99902 * 4 2 1 31 31 H 1.08996 * 109.47458 * 304.99659 * 4 2 1 32 32 H 1.09000 * 109.47092 * 60.00123 * 6 5 4 33 33 H 1.09007 * 109.46509 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.46862 * 299.99563 * 6 5 4 35 35 H 0.96998 * 120.00036 * 354.14760 * 11 9 2 36 36 H 1.07997 * 119.91349 * 359.97438 * 13 12 11 37 37 H 1.08003 * 119.69678 * 180.26849 * 14 13 12 38 38 H 1.07993 * 120.09759 * 180.02562 * 17 15 14 39 39 H 0.97001 * 120.00012 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 16 1.5601 0.2158 -2.7266 6 6 2.2550 -0.8019 -4.0579 7 8 0.1433 0.1969 -2.8342 8 8 2.2382 1.4644 -2.7109 9 6 2.0324 -0.7105 1.2304 10 8 2.7296 -1.6966 1.1190 11 7 1.7068 -0.2501 2.4545 12 6 2.0671 -0.9724 3.5880 13 6 2.2783 -2.3398 3.5057 14 6 2.6417 -3.0554 4.6307 15 6 2.7885 -2.4186 5.8575 16 17 3.2394 -3.3392 7.2586 17 6 2.5795 -1.0637 5.9684 18 6 2.2141 -0.3169 4.8327 19 6 1.9967 1.0731 4.9350 20 1 1.6505 1.6301 4.0769 21 6 2.2294 1.7304 6.1484 22 7 1.9693 1.1268 7.2799 23 14 2.9112 3.4696 6.1528 24 1 1.7914 4.4401 6.2492 25 1 3.8179 3.6429 7.3160 26 1 3.6664 3.7083 4.8967 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1263 -0.7995 -1.2057 31 1 1.6054 -1.7197 -1.2953 32 1 1.8144 -1.7981 -4.0215 33 1 2.0328 -0.3416 -5.0207 34 1 3.3350 -0.8773 -3.9314 35 1 1.2214 0.5847 2.5454 36 1 2.1626 -2.8466 2.5591 37 1 2.8087 -4.1199 4.5569 38 1 2.6954 -0.5742 6.9241 39 1 2.1310 1.5822 8.1209 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566457551.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:00 Heat of formation + Delta-G solvation = -94.595577 kcal Electronic energy + Delta-G solvation = -25526.567599 eV Core-core repulsion = 21587.291406 eV Total energy + Delta-G solvation = -3939.276192 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.97472 -37.60857 -37.20503 -36.29292 -35.50309 -34.65108 -34.09688 -33.60018 -30.06535 -29.91685 -28.47998 -27.44153 -25.63557 -23.88445 -21.75447 -20.69912 -19.34760 -19.07671 -17.75333 -17.56329 -16.78833 -16.38126 -16.25688 -15.70803 -15.44261 -15.11753 -14.73363 -14.23324 -13.77172 -13.54551 -13.51567 -13.43583 -13.11756 -12.98993 -12.76903 -12.59899 -12.23230 -12.18766 -11.97646 -11.81343 -11.63399 -11.51464 -11.38161 -11.29371 -11.24520 -10.89054 -10.71324 -10.64650 -10.47686 -10.31301 -9.76939 -9.30508 -9.18336 -8.85791 -7.80003 -7.22156 -6.89627 -4.54091 -0.27306 2.34586 2.48592 2.65891 2.90726 2.94794 3.11723 3.23169 3.29342 3.35363 3.68337 3.76680 3.79986 4.23705 4.25487 4.47386 4.48363 4.72786 4.88299 5.16959 5.30295 5.31839 5.39868 5.47905 5.70112 5.83961 6.14534 6.27802 6.38379 6.63232 6.78570 6.96027 7.01765 7.19966 7.53427 7.68514 7.80614 7.88020 8.17122 8.26388 8.57115 8.58337 8.82521 9.71574 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.012403 B = 0.003157 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.976871 B = 8867.567343 C =10639.726750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.097 4.097 3 H 0.110 0.890 4 C -0.587 4.587 5 S 2.420 3.580 6 C -0.656 4.656 7 O -0.936 6.936 8 O -0.939 6.939 9 C 0.508 3.492 10 O -0.536 6.536 11 N -0.631 5.631 12 C 0.003 3.997 13 C -0.074 4.074 14 C -0.238 4.238 15 C -0.002 4.002 16 Cl -0.127 7.127 17 C -0.190 4.190 18 C 0.103 3.897 19 C -0.452 4.452 20 H 0.082 0.918 21 C 0.084 3.916 22 N -0.751 5.751 23 Si 0.905 3.095 24 H -0.266 1.266 25 H -0.271 1.271 26 H -0.256 1.256 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.404 0.596 36 H 0.123 0.877 37 H 0.099 0.901 38 H 0.157 0.843 39 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.107 -0.060 -14.078 14.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.120 4.120 3 H 0.128 0.872 4 C -0.717 4.717 5 S 2.602 3.398 6 C -0.806 4.806 7 O -0.933 6.933 8 O -0.937 6.937 9 C 0.293 3.707 10 O -0.415 6.415 11 N -0.272 5.272 12 C -0.091 4.091 13 C -0.095 4.095 14 C -0.258 4.258 15 C -0.029 4.029 16 Cl -0.099 7.099 17 C -0.210 4.210 18 C 0.098 3.902 19 C -0.479 4.479 20 H 0.100 0.900 21 C -0.139 4.139 22 N -0.373 5.373 23 Si 0.728 3.272 24 H -0.191 1.191 25 H -0.196 1.196 26 H -0.179 1.179 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.159 0.841 31 H 0.158 0.842 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.240 0.760 36 H 0.141 0.859 37 H 0.117 0.883 38 H 0.174 0.826 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.107 -0.010 -13.879 13.923 hybrid contribution 0.709 0.179 0.346 0.809 sum -0.398 0.169 -13.533 13.540 Atomic orbital electron populations 1.22300 0.91607 1.04529 1.05033 1.20955 0.98299 1.00762 0.91967 0.87218 1.30167 1.12926 1.14166 1.14425 1.07859 0.76119 0.77230 0.78564 1.30255 1.14064 1.16754 1.19497 1.93579 1.27383 1.86918 1.85450 1.93609 1.76253 1.37863 1.85938 1.20078 0.80854 0.85534 0.84202 1.90612 1.37642 1.26844 1.86387 1.42873 1.54851 1.25259 1.04261 1.17542 1.14775 0.90557 0.86188 1.20607 0.99270 0.91993 0.97597 1.20078 1.15897 0.98488 0.91372 1.20786 1.03898 0.92399 0.85786 1.98250 1.91852 1.75365 1.44386 1.21780 1.07341 0.90491 1.01402 1.17201 0.91095 0.92710 0.89155 1.19288 1.39476 0.92516 0.96611 0.89976 1.26038 0.92313 1.00956 0.94642 1.69788 1.29159 1.38778 0.99568 0.86327 0.80018 0.80985 0.79856 1.19145 1.19556 1.17914 0.90610 0.89155 0.91004 0.84077 0.84248 0.85224 0.85355 0.85246 0.75953 0.85935 0.88273 0.82623 0.90034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.01 8.73 37.16 0.32 -1.68 16 2 C -0.10 -1.20 2.72 -91.77 -0.25 -1.45 16 3 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 4 C -0.59 -5.52 4.61 37.16 0.17 -5.34 16 5 S 2.42 19.97 5.15 -107.50 -0.55 19.42 16 6 C -0.66 -3.12 10.62 101.05 1.07 -2.05 16 7 O -0.94 -10.28 15.46 -57.83 -0.89 -11.18 16 8 O -0.94 -11.28 18.10 -57.83 -1.05 -12.32 16 9 C 0.51 8.71 6.95 -10.98 -0.08 8.63 16 10 O -0.54 -10.69 13.09 5.56 0.07 -10.61 16 11 N -0.63 -11.85 4.99 -9.48 -0.05 -11.89 16 12 C 0.00 0.07 6.46 -83.18 -0.54 -0.47 16 13 C -0.07 -1.70 8.70 -39.46 -0.34 -2.04 16 14 C -0.24 -5.45 9.82 -39.31 -0.39 -5.83 16 15 C 0.00 -0.05 6.31 -39.55 -0.25 -0.30 16 16 Cl -0.13 -2.63 28.94 -51.86 -1.50 -4.13 16 17 C -0.19 -4.73 8.83 -38.89 -0.34 -5.07 16 18 C 0.10 2.51 5.75 -106.66 -0.61 1.90 16 19 C -0.45 -10.50 8.68 -37.87 -0.33 -10.83 16 20 H 0.08 1.74 6.54 -52.48 -0.34 1.39 16 21 C 0.08 1.88 5.11 -17.33 -0.09 1.79 16 22 N -0.75 -17.33 10.57 55.55 0.59 -16.74 16 23 Si 0.91 16.73 29.67 -169.99 -5.04 11.68 16 24 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 25 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 26 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 27 H 0.07 0.81 7.71 -51.93 -0.40 0.41 16 28 H 0.09 0.97 5.40 -51.93 -0.28 0.69 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.14 1.23 7.96 -51.92 -0.41 0.82 16 31 H 0.14 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.13 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.13 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.13 0.45 8.14 -51.92 -0.42 0.02 16 35 H 0.40 6.71 6.71 -40.82 -0.27 6.43 16 36 H 0.12 2.73 5.78 -52.49 -0.30 2.43 16 37 H 0.10 2.10 8.06 -52.48 -0.42 1.67 16 38 H 0.16 3.99 5.09 -52.49 -0.27 3.73 16 39 H 0.29 5.98 8.30 -40.82 -0.34 5.64 16 LS Contribution 350.97 15.07 5.29 5.29 Total: -1.00 -32.27 350.97 -9.16 -41.43 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -4.38 Total: 11.82 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -1.65 Total: -22.76 kcal Atomic # 7 Polarization: -29.18 SS G_CDS: 0.54 Total: -28.64 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -1.87 Total: -34.11 kcal Atomic # 14 Polarization: 16.73 SS G_CDS: -5.04 Total: 11.68 kcal Atomic # 16 Polarization: 19.97 SS G_CDS: -0.55 Total: 19.42 kcal Atomic # 17 Polarization: -2.63 SS G_CDS: -1.50 Total: -4.13 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.27 -9.16 -41.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566457551.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.166 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds