Wall clock time and date at job start Wed Apr 1 2020 03:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47364 * 2 1 4 4 C 1.53000 * 109.46679 * 240.00293 * 2 1 3 5 5 S 1.81404 * 109.47227 * 65.00334 * 4 2 1 6 6 C 1.81406 * 101.91954 * 179.97438 * 5 4 2 7 7 O 1.42095 * 108.57553 * 294.48398 * 5 4 2 8 8 O 1.42100 * 108.58040 * 65.51213 * 5 4 2 9 9 C 1.50699 * 109.47303 * 120.00693 * 2 1 3 10 10 O 1.21277 * 120.00129 * 119.99463 * 9 2 1 11 11 N 1.34782 * 119.99614 * 299.99807 * 9 2 1 12 12 C 1.39148 * 119.99768 * 174.15021 * 11 9 2 13 13 C 1.38603 * 120.21188 * 335.18984 * 12 11 9 14 14 C 1.38192 * 120.17069 * 179.72042 * 13 12 11 15 15 C 1.39006 * 120.60209 * 0.55820 * 14 13 12 16 16 Cl 1.73606 * 119.78828 * 179.74616 * 15 14 13 17 17 C 1.37541 * 120.42190 * 359.71589 * 15 14 13 18 18 C 1.40748 * 119.80729 * 0.02562 * 17 15 14 19 19 C 1.41065 * 120.28599 * 179.97438 * 18 17 15 20 20 H 1.08004 * 119.99656 * 184.22052 * 19 18 17 21 21 C 1.39949 * 120.00474 * 4.21437 * 19 18 17 22 22 N 1.30851 * 119.99887 * 324.59334 * 21 19 18 23 23 Si 1.86804 * 120.00002 * 144.59547 * 21 19 18 24 24 H 1.48495 * 109.47213 * 95.00075 * 23 21 19 25 25 H 1.48501 * 109.46967 * 215.00014 * 23 21 19 26 26 H 1.48497 * 109.46938 * 334.99754 * 23 21 19 27 27 H 1.08997 * 109.46634 * 300.00077 * 1 2 3 28 28 H 1.08998 * 109.46908 * 59.99342 * 1 2 3 29 29 H 1.08995 * 109.47364 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47167 * 184.99902 * 4 2 1 31 31 H 1.08996 * 109.47458 * 304.99659 * 4 2 1 32 32 H 1.09000 * 109.47092 * 60.00123 * 6 5 4 33 33 H 1.09007 * 109.46509 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.46862 * 299.99563 * 6 5 4 35 35 H 0.96998 * 120.00036 * 354.14760 * 11 9 2 36 36 H 1.07997 * 119.91349 * 359.97438 * 13 12 11 37 37 H 1.08003 * 119.69678 * 180.26849 * 14 13 12 38 38 H 1.07993 * 120.09759 * 180.02562 * 17 15 14 39 39 H 0.97001 * 120.00012 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 16 1.5601 0.2158 -2.7266 6 6 2.2550 -0.8019 -4.0579 7 8 0.1433 0.1969 -2.8342 8 8 2.2382 1.4644 -2.7109 9 6 2.0324 -0.7105 1.2304 10 8 2.7296 -1.6966 1.1190 11 7 1.7068 -0.2501 2.4545 12 6 2.0671 -0.9724 3.5880 13 6 2.2783 -2.3398 3.5057 14 6 2.6417 -3.0554 4.6307 15 6 2.7885 -2.4186 5.8575 16 17 3.2394 -3.3392 7.2586 17 6 2.5795 -1.0637 5.9684 18 6 2.2141 -0.3169 4.8327 19 6 1.9967 1.0731 4.9350 20 1 1.6505 1.6301 4.0769 21 6 2.2294 1.7304 6.1484 22 7 1.9693 1.1268 7.2799 23 14 2.9112 3.4696 6.1528 24 1 1.7914 4.4401 6.2492 25 1 3.8179 3.6429 7.3160 26 1 3.6664 3.7083 4.8967 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1263 -0.7995 -1.2057 31 1 1.6054 -1.7197 -1.2953 32 1 1.8144 -1.7981 -4.0215 33 1 2.0328 -0.3416 -5.0207 34 1 3.3350 -0.8773 -3.9314 35 1 1.2214 0.5847 2.5454 36 1 2.1626 -2.8466 2.5591 37 1 2.8087 -4.1199 4.5569 38 1 2.6954 -0.5742 6.9241 39 1 2.1310 1.5822 8.1209 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566457551.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:59 Heat of formation + Delta-G solvation = -116.074954 kcal Electronic energy + Delta-G solvation = -25527.499014 eV Core-core repulsion = 21587.291406 eV Total energy + Delta-G solvation = -3940.207608 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.43214 -39.25115 -37.97277 -37.21957 -37.06665 -35.88670 -35.63980 -35.18022 -31.70194 -30.52775 -30.06863 -28.31836 -27.35156 -25.14851 -23.42776 -22.30069 -20.77217 -19.76457 -19.44325 -18.74891 -18.17571 -17.31680 -17.13818 -16.89687 -16.71730 -16.41689 -16.22566 -15.52884 -15.14368 -14.90069 -14.60687 -14.36405 -14.08270 -13.94866 -13.89320 -13.77791 -13.70508 -13.60421 -13.15976 -12.98101 -12.91131 -12.66283 -12.57167 -12.48079 -12.32608 -12.21670 -12.07856 -11.98951 -11.97416 -11.54892 -11.41440 -10.89633 -10.84756 -10.41765 -9.60906 -8.93738 -8.61983 -6.31650 -0.90832 0.66396 0.95153 1.38243 1.48476 1.56328 1.59918 1.75976 1.88391 2.13115 2.31725 2.53437 2.77365 3.15903 3.38322 3.56706 3.76595 3.77950 4.14083 4.15299 4.25129 4.45741 4.52089 4.61959 4.65921 4.82396 4.91412 4.99917 5.03414 5.05292 5.24158 5.25532 5.30892 5.45135 5.78318 5.91284 6.04210 6.13079 6.46134 6.58576 6.83492 6.89566 7.34098 8.05835 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.012403 B = 0.003157 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.976871 B = 8867.567343 C =10639.726750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.096 4.096 3 H 0.122 0.878 4 C -0.595 4.595 5 S 2.437 3.563 6 C -0.637 4.637 7 O -0.966 6.966 8 O -0.981 6.981 9 C 0.507 3.493 10 O -0.564 6.564 11 N -0.634 5.634 12 C 0.001 3.999 13 C -0.085 4.085 14 C -0.248 4.248 15 C -0.011 4.011 16 Cl -0.108 7.108 17 C -0.220 4.220 18 C 0.077 3.923 19 C -0.471 4.471 20 H 0.096 0.904 21 C 0.048 3.952 22 N -0.778 5.778 23 Si 0.976 3.024 24 H -0.254 1.254 25 H -0.269 1.269 26 H -0.258 1.258 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.148 0.852 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.143 0.857 34 H 0.149 0.851 35 H 0.413 0.587 36 H 0.127 0.873 37 H 0.113 0.887 38 H 0.146 0.854 39 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.858 0.530 -15.989 16.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.118 4.118 3 H 0.140 0.860 4 C -0.723 4.723 5 S 2.622 3.378 6 C -0.790 4.790 7 O -0.963 6.963 8 O -0.978 6.978 9 C 0.295 3.705 10 O -0.444 6.444 11 N -0.276 5.276 12 C -0.094 4.094 13 C -0.106 4.106 14 C -0.268 4.268 15 C -0.038 4.038 16 Cl -0.079 7.079 17 C -0.241 4.241 18 C 0.073 3.927 19 C -0.497 4.497 20 H 0.114 0.886 21 C -0.173 4.173 22 N -0.400 5.400 23 Si 0.796 3.204 24 H -0.178 1.178 25 H -0.193 1.193 26 H -0.182 1.182 27 H 0.096 0.904 28 H 0.117 0.883 29 H 0.090 0.910 30 H 0.166 0.834 31 H 0.171 0.829 32 H 0.171 0.829 33 H 0.161 0.839 34 H 0.167 0.833 35 H 0.251 0.749 36 H 0.144 0.856 37 H 0.131 0.869 38 H 0.163 0.837 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.892 0.601 -15.759 15.796 hybrid contribution 0.638 -0.086 0.893 1.101 sum -0.254 0.515 -14.866 14.877 Atomic orbital electron populations 1.22334 0.90793 1.04768 1.05603 1.21014 0.98942 1.01161 0.90705 0.85972 1.30283 1.13463 1.14870 1.13722 1.07181 0.75111 0.76759 0.78713 1.30083 1.15119 1.16691 1.17120 1.93534 1.29469 1.87458 1.85884 1.93557 1.76725 1.40863 1.86658 1.20924 0.79742 0.85086 0.84773 1.90584 1.38749 1.28180 1.86854 1.42933 1.55204 1.25502 1.03972 1.17679 1.13717 0.90848 0.87119 1.20759 0.99701 0.92300 0.97791 1.20278 1.16055 0.99218 0.91272 1.20887 1.03746 0.92377 0.86787 1.98239 1.91650 1.74727 1.43306 1.21807 1.09537 0.91294 1.01448 1.17539 0.91836 0.93560 0.89776 1.19646 1.39889 0.92479 0.97703 0.88575 1.26886 0.91881 1.04628 0.93946 1.69804 1.29409 1.40432 1.00372 0.85272 0.79408 0.76259 0.79503 1.17802 1.19339 1.18172 0.90401 0.88266 0.90972 0.83421 0.82908 0.82872 0.83859 0.83273 0.74933 0.85562 0.86928 0.83732 0.89150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.85 8.73 71.98 0.63 -3.22 16 2 C -0.10 -2.28 2.72 -11.54 -0.03 -2.31 16 3 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 4 C -0.60 -10.16 4.61 71.98 0.33 -9.83 16 5 S 2.44 35.57 5.15 -56.49 -0.29 35.28 16 6 C -0.64 -3.60 10.62 113.37 1.20 -2.39 16 7 O -0.97 -19.74 15.46 -127.37 -1.97 -21.71 16 8 O -0.98 -22.38 18.10 -127.37 -2.30 -24.68 16 9 C 0.51 17.18 6.95 87.66 0.61 17.78 16 10 O -0.56 -22.29 13.09 -3.02 -0.04 -22.33 16 11 N -0.63 -23.83 4.99 -302.31 -1.51 -25.34 16 12 C 0.00 0.04 6.46 38.86 0.25 0.29 16 13 C -0.08 -3.94 8.70 22.35 0.19 -3.75 16 14 C -0.25 -11.49 9.82 22.44 0.22 -11.27 16 15 C -0.01 -0.54 6.31 22.29 0.14 -0.40 16 16 Cl -0.11 -4.48 28.94 -2.72 -0.08 -4.56 16 17 C -0.22 -11.29 8.83 22.72 0.20 -11.09 16 18 C 0.08 3.86 5.75 -21.18 -0.12 3.74 16 19 C -0.47 -22.03 8.68 23.38 0.20 -21.83 16 20 H 0.10 4.05 6.54 -2.91 -0.02 4.03 16 21 C 0.05 2.14 5.11 85.25 0.44 2.57 16 22 N -0.78 -36.26 10.57 21.83 0.23 -36.03 16 23 Si 0.98 33.73 29.67 68.60 2.04 35.77 16 24 H -0.25 -8.23 7.11 99.48 0.71 -7.52 16 25 H -0.27 -9.14 7.11 99.48 0.71 -8.43 16 26 H -0.26 -8.96 7.11 99.48 0.71 -8.26 16 27 H 0.08 1.62 7.71 -2.39 -0.02 1.60 16 28 H 0.10 2.02 5.40 -2.39 -0.01 2.01 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.15 2.32 7.96 -2.39 -0.02 2.30 16 31 H 0.15 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.15 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.14 0.55 8.14 -2.39 -0.02 0.54 16 34 H 0.15 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.41 13.68 6.71 -92.71 -0.62 13.05 16 36 H 0.13 5.69 5.78 -2.91 -0.02 5.67 16 37 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 38 H 0.15 7.66 5.09 -2.91 -0.01 7.64 16 39 H 0.30 12.37 8.30 -92.71 -0.77 11.60 16 Total: -1.00 -70.32 350.97 0.83 -69.50 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: 0.49 Total: 35.79 kcal Atomic # 6 Polarization: -45.96 SS G_CDS: 4.27 Total: -41.69 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: -1.28 Total: -61.37 kcal Atomic # 8 Polarization: -64.41 SS G_CDS: -4.31 Total: -68.72 kcal Atomic # 14 Polarization: 33.73 SS G_CDS: 2.04 Total: 35.77 kcal Atomic # 16 Polarization: 35.57 SS G_CDS: -0.29 Total: 35.28 kcal Atomic # 17 Polarization: -4.48 SS G_CDS: -0.08 Total: -4.56 kcal Total: -70.32 0.83 -69.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566457551.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.579 kcal (2) G-P(sol) polarization free energy of solvation -70.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds