Wall clock time and date at job start Wed Apr 1 2020 03:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 120.00354 * 2 1 4 4 N 1.46495 * 109.47543 * 124.99580 * 3 2 1 5 5 C 1.46503 * 120.00162 * 275.00054 * 4 3 2 6 6 C 1.50693 * 109.47284 * 275.00072 * 5 4 3 7 7 H 1.08008 * 119.99985 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00033 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00390 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00113 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47142 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47595 * 119.99529 * 10 8 6 13 13 H 1.48504 * 109.47300 * 240.00040 * 10 8 6 14 14 S 1.65600 * 119.99914 * 94.99799 * 4 3 2 15 15 O 1.42096 * 106.40455 * 336.46304 * 14 4 3 16 16 O 1.42103 * 106.40284 * 203.54226 * 14 4 3 17 17 C 1.76200 * 107.21732 * 90.00447 * 14 4 3 18 18 C 1.38173 * 120.01788 * 115.21448 * 17 14 4 19 19 C 1.38229 * 120.06791 * 180.25407 * 18 17 14 20 20 C 1.38411 * 120.09660 * 359.78459 * 19 18 17 21 21 Cl 1.73595 * 119.98207 * 180.02562 * 20 19 18 22 22 C 1.38234 * 120.02964 * 359.97438 * 20 19 18 23 23 C 1.38720 * 120.01393 * 294.99838 * 17 14 4 24 24 O 1.35901 * 120.04948 * 0.02562 * 23 17 14 25 25 C 1.42903 * 117.00336 * 179.72349 * 24 23 17 26 26 H 1.08005 * 119.99853 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.00488 * 179.97438 * 1 2 3 28 28 H 1.08005 * 119.99853 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.47002 * 4.99464 * 3 2 1 30 30 H 1.08997 * 109.46778 * 244.99933 * 3 2 1 31 31 H 1.09000 * 109.46971 * 35.00093 * 5 4 3 32 32 H 1.09007 * 109.46884 * 154.99549 * 5 4 3 33 33 H 0.97001 * 120.00285 * 180.02562 * 9 8 6 34 34 H 1.08002 * 119.96525 * 0.02562 * 18 17 14 35 35 H 1.07996 * 119.94660 * 179.76496 * 19 18 17 36 36 H 1.08003 * 120.03385 * 180.02562 * 22 20 19 37 37 H 1.09002 * 109.47382 * 179.97438 * 25 24 23 38 38 H 1.09001 * 109.46938 * 59.99705 * 25 24 23 39 39 H 1.09004 * 109.46926 * 299.99826 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5285 1.7623 2.4523 6 6 2.5991 3.2647 2.5449 7 1 2.9554 3.8414 1.7040 8 6 2.2099 3.9030 3.7032 9 7 1.7765 3.2008 4.7273 10 14 2.2981 5.7654 3.8183 11 1 2.8167 6.3163 2.5405 12 1 0.9414 6.3102 4.0783 13 1 3.2071 6.1503 4.9278 14 16 4.5713 0.8758 0.9174 15 8 4.5924 0.0261 -0.2213 16 8 5.0503 0.4763 2.1942 17 6 5.4769 2.3215 0.4763 18 6 6.4576 2.8070 1.3198 19 6 7.1651 3.9441 0.9773 20 6 6.8961 4.5965 -0.2134 21 17 7.7869 6.0238 -0.6410 22 6 5.9193 4.1114 -1.0627 23 6 5.2087 2.9701 -0.7203 24 8 4.2472 2.4918 -1.5530 25 6 4.0207 3.2139 -2.7652 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5401 -0.9352 -0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.3586 2.1317 0.0895 30 1 2.6214 1.4025 -0.9314 31 1 1.4983 1.4373 2.5982 32 1 3.1613 1.3205 3.2221 33 1 1.5023 3.6500 5.5421 34 1 6.6690 2.2997 2.2496 35 1 7.9286 4.3240 1.6399 36 1 5.7097 4.6201 -1.9921 37 1 3.2303 2.7267 -3.3362 38 1 4.9372 3.2304 -3.3549 39 1 3.7220 4.2354 -2.5292 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589921214.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:08 Heat of formation + Delta-G solvation = -63.152865 kcal Electronic energy + Delta-G solvation = -27092.749173 eV Core-core repulsion = 23154.836439 eV Total energy + Delta-G solvation = -3937.912734 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.29843 -37.85066 -36.66071 -36.38148 -36.26107 -35.20278 -33.18046 -31.86455 -31.18505 -30.32983 -27.51765 -27.39300 -24.87314 -23.30174 -22.51772 -22.14708 -19.63909 -18.99446 -18.09581 -17.14040 -16.83645 -16.47164 -16.28702 -15.83841 -15.58012 -15.28036 -14.57115 -14.46932 -14.42018 -13.98991 -13.63056 -13.49097 -12.97993 -12.77650 -12.44329 -12.17177 -12.11688 -12.02130 -11.77214 -11.62058 -11.43521 -11.25989 -11.16119 -11.12855 -11.00528 -10.84260 -10.68885 -10.51198 -10.43725 -10.05265 -9.77252 -9.16021 -8.98541 -8.49798 -8.47663 -8.04369 -6.10471 -4.16465 0.68581 1.12494 1.27992 1.86012 2.66915 3.02832 3.23474 3.31568 3.32349 3.35063 3.75404 4.32984 4.37179 4.55333 4.76254 4.89156 5.02561 5.05997 5.22841 5.26923 5.37448 5.39529 5.49409 5.54303 5.58487 5.71729 5.83292 6.04535 6.07637 6.24087 6.40149 6.51064 6.54561 7.02121 7.04232 7.12076 7.37954 7.46074 7.65693 7.86861 8.15938 8.88353 9.49538 10.97580 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.008595 B = 0.006156 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3256.887101 B = 4547.091781 C = 6170.940265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.158 4.158 3 C 0.153 3.847 4 N -0.971 5.971 5 C 0.243 3.757 6 C -0.538 4.538 7 H 0.060 0.940 8 C 0.066 3.934 9 N -0.888 5.888 10 Si 0.888 3.112 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.282 1.282 14 S 2.695 3.305 15 O -0.965 6.965 16 O -0.959 6.959 17 C -0.688 4.688 18 C 0.037 3.963 19 C -0.170 4.170 20 C 0.049 3.951 21 Cl -0.065 7.065 22 C -0.224 4.224 23 C 0.237 3.763 24 O -0.301 6.301 25 C 0.022 3.978 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.264 0.736 34 H 0.159 0.841 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.109 0.891 38 H 0.060 0.940 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.084 1.342 -13.447 14.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.178 4.178 3 C 0.027 3.973 4 N -0.810 5.810 5 C 0.122 3.878 6 C -0.577 4.577 7 H 0.079 0.921 8 C -0.137 4.137 9 N -0.527 5.527 10 Si 0.716 3.284 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.208 1.208 14 S 2.782 3.218 15 O -0.955 6.955 16 O -0.949 6.949 17 C -0.773 4.773 18 C 0.017 3.983 19 C -0.189 4.189 20 C 0.022 3.978 21 Cl -0.036 7.036 22 C -0.244 4.244 23 C 0.189 3.811 24 O -0.213 6.213 25 C -0.072 4.072 26 H 0.115 0.885 27 H 0.110 0.890 28 H 0.125 0.875 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.177 0.823 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.127 0.873 38 H 0.078 0.922 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.322 0.536 -13.196 14.642 hybrid contribution 0.174 2.422 -0.125 2.432 sum 6.496 2.958 -13.320 15.112 Atomic orbital electron populations 1.23752 0.95798 1.01465 1.01848 1.23482 0.96287 0.99431 0.98580 1.20370 0.93064 0.95081 0.88804 1.57305 1.23467 1.82451 1.17727 1.19276 0.97235 0.94822 0.76495 1.21568 1.44431 0.92022 0.99689 0.92133 1.24905 0.95019 0.98204 0.95536 1.69937 1.43230 1.35403 1.04085 0.86595 0.77802 0.85796 0.78194 1.19788 1.20897 1.20788 1.01904 0.73022 0.73733 0.73093 1.93533 1.86704 1.62890 1.52406 1.93543 1.80305 1.80421 1.40653 1.30640 1.16882 1.27534 1.02204 1.20816 0.88683 0.92278 0.96491 1.21056 1.03820 0.97493 0.96549 1.20847 0.93338 0.88577 0.95040 1.98375 1.74181 1.38037 1.93046 1.21020 1.01045 0.99470 1.02906 1.18072 0.85576 0.89599 0.87850 1.86171 1.51304 1.52323 1.31510 1.23217 1.02498 0.97483 0.84025 0.88499 0.88962 0.87538 0.89887 0.89166 0.93847 0.92889 0.92650 0.82338 0.84010 0.83900 0.87300 0.92160 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.77 14.32 29.01 0.42 -2.35 16 2 C -0.16 -2.60 9.84 -36.03 -0.35 -2.96 16 3 C 0.15 2.71 5.58 -5.20 -0.03 2.68 16 4 N -0.97 -20.22 2.75 -116.95 -0.32 -20.55 16 5 C 0.24 6.01 5.43 -5.20 -0.03 5.98 16 6 C -0.54 -14.09 9.38 -34.45 -0.32 -14.41 16 7 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 8 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -25.26 13.29 55.43 0.74 -24.52 16 10 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 S 2.70 54.77 5.24 -107.50 -0.56 54.21 16 15 O -0.97 -19.79 16.27 -62.49 -1.02 -20.80 16 16 O -0.96 -21.70 15.52 -57.17 -0.89 -22.59 16 17 C -0.69 -12.56 5.92 -39.43 -0.23 -12.79 16 18 C 0.04 0.61 9.54 -39.61 -0.38 0.24 16 19 C -0.17 -2.47 9.83 -39.52 -0.39 -2.86 16 20 C 0.05 0.69 6.32 -39.52 -0.25 0.44 16 21 Cl -0.07 -0.79 28.95 -51.86 -1.50 -2.29 16 22 C -0.22 -3.16 8.82 -39.40 -0.35 -3.50 16 23 C 0.24 3.86 6.63 -39.22 -0.26 3.60 16 24 O -0.30 -4.46 6.47 -29.15 -0.19 -4.65 16 25 C 0.02 0.21 9.81 101.05 0.99 1.21 16 26 H 0.10 1.36 7.84 -52.48 -0.41 0.94 16 27 H 0.09 1.16 8.06 -52.49 -0.42 0.74 16 28 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 29 H 0.08 1.47 7.76 -51.93 -0.40 1.06 16 30 H 0.09 1.47 4.85 -51.93 -0.25 1.22 16 31 H 0.04 1.12 8.11 -51.93 -0.42 0.70 16 32 H 0.05 1.43 6.91 -51.93 -0.36 1.07 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.16 2.51 7.33 -52.49 -0.38 2.12 16 35 H 0.14 1.69 8.06 -52.49 -0.42 1.26 16 36 H 0.14 1.58 6.30 -52.48 -0.33 1.25 16 37 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 39 H 0.06 0.54 7.66 -51.93 -0.40 0.15 16 LS Contribution 359.11 15.07 5.41 5.41 Total: -1.00 -31.84 359.11 -9.23 -41.07 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -4.59 Total: 1.88 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -1.28 Total: -23.03 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.41 Total: -45.07 kcal Atomic # 8 Polarization: -45.95 SS G_CDS: -2.09 Total: -48.04 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 54.77 SS G_CDS: -0.56 Total: 54.21 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.50 Total: -2.29 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.84 -9.23 -41.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589921214.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.087 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds