Wall clock time and date at job start Wed Apr 1 2020 03:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 120.00354 * 2 1 4 4 N 1.46495 * 109.47543 * 124.99580 * 3 2 1 5 5 C 1.46503 * 120.00162 * 275.00054 * 4 3 2 6 6 C 1.50693 * 109.47284 * 275.00072 * 5 4 3 7 7 H 1.08008 * 119.99985 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00033 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00390 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00113 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47142 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47595 * 119.99529 * 10 8 6 13 13 H 1.48504 * 109.47300 * 240.00040 * 10 8 6 14 14 S 1.65600 * 119.99914 * 94.99799 * 4 3 2 15 15 O 1.42096 * 106.40455 * 336.46304 * 14 4 3 16 16 O 1.42103 * 106.40284 * 203.54226 * 14 4 3 17 17 C 1.76200 * 107.21732 * 90.00447 * 14 4 3 18 18 C 1.38173 * 120.01788 * 115.21448 * 17 14 4 19 19 C 1.38229 * 120.06791 * 180.25407 * 18 17 14 20 20 C 1.38411 * 120.09660 * 359.78459 * 19 18 17 21 21 Cl 1.73595 * 119.98207 * 180.02562 * 20 19 18 22 22 C 1.38234 * 120.02964 * 359.97438 * 20 19 18 23 23 C 1.38720 * 120.01393 * 294.99838 * 17 14 4 24 24 O 1.35901 * 120.04948 * 0.02562 * 23 17 14 25 25 C 1.42903 * 117.00336 * 179.72349 * 24 23 17 26 26 H 1.08005 * 119.99853 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.00488 * 179.97438 * 1 2 3 28 28 H 1.08005 * 119.99853 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.47002 * 4.99464 * 3 2 1 30 30 H 1.08997 * 109.46778 * 244.99933 * 3 2 1 31 31 H 1.09000 * 109.46971 * 35.00093 * 5 4 3 32 32 H 1.09007 * 109.46884 * 154.99549 * 5 4 3 33 33 H 0.97001 * 120.00285 * 180.02562 * 9 8 6 34 34 H 1.08002 * 119.96525 * 0.02562 * 18 17 14 35 35 H 1.07996 * 119.94660 * 179.76496 * 19 18 17 36 36 H 1.08003 * 120.03385 * 180.02562 * 22 20 19 37 37 H 1.09002 * 109.47382 * 179.97438 * 25 24 23 38 38 H 1.09001 * 109.46938 * 59.99705 * 25 24 23 39 39 H 1.09004 * 109.46926 * 299.99826 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5285 1.7623 2.4523 6 6 2.5991 3.2647 2.5449 7 1 2.9554 3.8414 1.7040 8 6 2.2099 3.9030 3.7032 9 7 1.7765 3.2008 4.7273 10 14 2.2981 5.7654 3.8183 11 1 2.8167 6.3163 2.5405 12 1 0.9414 6.3102 4.0783 13 1 3.2071 6.1503 4.9278 14 16 4.5713 0.8758 0.9174 15 8 4.5924 0.0261 -0.2213 16 8 5.0503 0.4763 2.1942 17 6 5.4769 2.3215 0.4763 18 6 6.4576 2.8070 1.3198 19 6 7.1651 3.9441 0.9773 20 6 6.8961 4.5965 -0.2134 21 17 7.7869 6.0238 -0.6410 22 6 5.9193 4.1114 -1.0627 23 6 5.2087 2.9701 -0.7203 24 8 4.2472 2.4918 -1.5530 25 6 4.0207 3.2139 -2.7652 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5401 -0.9352 -0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.3586 2.1317 0.0895 30 1 2.6214 1.4025 -0.9314 31 1 1.4983 1.4373 2.5982 32 1 3.1613 1.3205 3.2221 33 1 1.5023 3.6500 5.5421 34 1 6.6690 2.2997 2.2496 35 1 7.9286 4.3240 1.6399 36 1 5.7097 4.6201 -1.9921 37 1 3.2303 2.7267 -3.3362 38 1 4.9372 3.2304 -3.3549 39 1 3.7220 4.2354 -2.5292 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589921214.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:08 Heat of formation + Delta-G solvation = -82.856282 kcal Electronic energy + Delta-G solvation = -27093.603577 eV Core-core repulsion = 23154.836439 eV Total energy + Delta-G solvation = -3938.767138 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.40336 -38.96908 -38.18618 -37.86279 -37.49856 -36.85978 -34.98402 -33.51438 -32.35687 -31.44591 -29.30959 -28.30220 -26.50335 -24.59469 -24.04379 -23.53891 -20.96392 -20.28598 -19.47001 -18.67060 -18.44937 -17.98652 -17.77343 -17.13170 -16.86028 -16.50204 -16.21164 -15.89920 -15.63180 -15.17778 -15.09637 -14.63542 -14.50086 -14.19550 -13.98767 -13.73966 -13.35265 -13.16069 -13.12779 -13.03660 -13.00949 -12.94059 -12.74320 -12.46511 -12.29233 -12.27586 -12.14233 -12.03668 -11.85257 -11.76728 -11.60863 -10.58224 -10.32891 -10.25713 -9.80048 -9.57050 -8.16217 -6.29164 -0.61207 -0.35523 0.12458 0.78379 1.38844 1.40241 1.41968 1.52040 2.01436 2.05209 2.28578 2.43211 2.78555 3.15261 3.30555 3.62067 3.85938 3.91865 4.02836 4.21939 4.26587 4.29559 4.38413 4.43865 4.45437 4.59718 4.74308 4.87099 4.92246 4.96926 4.97676 5.12848 5.31736 5.37381 5.49109 5.73375 5.78509 5.83269 6.00605 6.05711 6.11698 6.82322 7.40469 8.92180 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.008595 B = 0.006156 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3256.887101 B = 4547.091781 C = 6170.940265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.188 4.188 3 C 0.149 3.851 4 N -0.976 5.976 5 C 0.261 3.739 6 C -0.538 4.538 7 H 0.064 0.936 8 C 0.016 3.984 9 N -0.925 5.925 10 Si 0.951 3.049 11 H -0.264 1.264 12 H -0.277 1.277 13 H -0.281 1.281 14 S 2.701 3.299 15 O -0.973 6.973 16 O -0.994 6.994 17 C -0.713 4.713 18 C 0.017 3.983 19 C -0.170 4.170 20 C 0.048 3.952 21 Cl -0.040 7.040 22 C -0.219 4.219 23 C 0.232 3.768 24 O -0.320 6.320 25 C 0.007 3.993 26 H 0.104 0.896 27 H 0.115 0.885 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.026 0.974 32 H 0.022 0.978 33 H 0.266 0.734 34 H 0.154 0.846 35 H 0.167 0.833 36 H 0.176 0.824 37 H 0.130 0.870 38 H 0.080 0.920 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.269 3.642 -15.554 17.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.208 4.208 3 C 0.025 3.975 4 N -0.814 5.814 5 C 0.137 3.863 6 C -0.578 4.578 7 H 0.082 0.918 8 C -0.184 4.184 9 N -0.565 5.565 10 Si 0.776 3.224 11 H -0.188 1.188 12 H -0.203 1.203 13 H -0.207 1.207 14 S 2.793 3.207 15 O -0.964 6.964 16 O -0.985 6.985 17 C -0.802 4.802 18 C -0.003 4.003 19 C -0.190 4.190 20 C 0.021 3.979 21 Cl -0.011 7.011 22 C -0.239 4.239 23 C 0.183 3.817 24 O -0.233 6.233 25 C -0.087 4.087 26 H 0.122 0.878 27 H 0.133 0.867 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.123 0.877 31 H 0.044 0.956 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.172 0.828 35 H 0.184 0.816 36 H 0.193 0.807 37 H 0.149 0.851 38 H 0.098 0.902 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.478 2.797 -15.331 16.877 hybrid contribution 0.139 1.740 0.397 1.790 sum 6.617 4.536 -14.934 16.952 Atomic orbital electron populations 1.24004 0.95118 1.02893 0.98611 1.23429 0.97096 0.98679 1.01562 1.20546 0.92894 0.95821 0.88243 1.57184 1.24449 1.82614 1.17148 1.18785 0.95529 0.94166 0.77800 1.21796 1.43631 0.92629 0.99711 0.91767 1.25709 0.94786 1.02659 0.95243 1.70057 1.44427 1.37296 1.04722 0.85611 0.77941 0.80438 0.78389 1.18787 1.20282 1.20652 1.01338 0.72785 0.74307 0.72303 1.93505 1.86788 1.63955 1.52111 1.93488 1.80821 1.81754 1.42442 1.30236 1.18155 1.27513 1.04269 1.20927 0.89285 0.93494 0.96549 1.21303 1.03836 0.96551 0.97280 1.21034 0.93134 0.89084 0.94662 1.98387 1.73499 1.36410 1.92787 1.21347 1.00089 0.98525 1.03930 1.18179 0.86085 0.89976 0.87467 1.86140 1.50750 1.53453 1.32929 1.23662 1.04387 0.98092 0.82517 0.87809 0.86696 0.88023 0.89998 0.87715 0.95550 0.96018 0.92514 0.82816 0.81569 0.80657 0.85143 0.90157 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.68 14.32 67.78 0.97 -3.71 16 2 C -0.19 -6.19 9.84 25.65 0.25 -5.94 16 3 C 0.15 5.34 5.58 85.63 0.48 5.82 16 4 N -0.98 -41.88 2.75 -523.91 -1.44 -43.32 16 5 C 0.26 13.38 5.43 85.63 0.47 13.84 16 6 C -0.54 -28.56 9.38 25.60 0.24 -28.32 16 7 H 0.06 3.30 7.81 -2.91 -0.02 3.27 16 8 C 0.02 0.85 5.46 84.65 0.46 1.31 16 9 N -0.93 -53.61 13.29 21.44 0.28 -53.33 16 10 Si 0.95 42.44 29.54 68.60 2.03 44.46 16 11 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 12 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 13 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 14 S 2.70 113.79 5.24 -56.49 -0.30 113.49 16 15 O -0.97 -40.89 16.27 -122.92 -2.00 -42.89 16 16 O -0.99 -47.70 15.52 -128.00 -1.99 -49.69 16 17 C -0.71 -26.20 5.92 22.37 0.13 -26.07 16 18 C 0.02 0.57 9.54 22.25 0.21 0.78 16 19 C -0.17 -4.71 9.83 22.31 0.22 -4.49 16 20 C 0.05 1.23 6.32 22.31 0.14 1.37 16 21 Cl -0.04 -0.83 28.95 -2.72 -0.08 -0.91 16 22 C -0.22 -5.56 8.82 22.39 0.20 -5.36 16 23 C 0.23 7.25 6.63 22.50 0.15 7.39 16 24 O -0.32 -8.99 6.47 -83.14 -0.54 -9.53 16 25 C 0.01 0.11 9.81 113.37 1.11 1.22 16 26 H 0.10 2.74 7.84 -2.91 -0.02 2.72 16 27 H 0.11 2.66 8.06 -2.91 -0.02 2.64 16 28 H 0.10 3.41 8.06 -2.91 -0.02 3.39 16 29 H 0.08 2.88 7.76 -2.38 -0.02 2.87 16 30 H 0.11 3.38 4.85 -2.39 -0.01 3.37 16 31 H 0.03 1.42 8.11 -2.39 -0.02 1.40 16 32 H 0.02 1.24 6.91 -2.38 -0.02 1.23 16 33 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 34 H 0.15 5.13 7.33 -2.91 -0.02 5.11 16 35 H 0.17 3.61 8.06 -2.91 -0.02 3.59 16 36 H 0.18 3.15 6.30 -2.91 -0.02 3.13 16 37 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.08 0.99 7.66 -2.39 -0.02 0.97 16 39 H 0.07 1.04 7.66 -2.38 -0.02 1.02 16 Total: -1.00 -69.56 359.11 2.07 -67.49 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 1.07 Total: 16.35 kcal Atomic # 6 Polarization: -47.17 SS G_CDS: 5.03 Total: -42.14 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -1.16 Total: -96.65 kcal Atomic # 8 Polarization: -97.58 SS G_CDS: -4.52 Total: -102.10 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Atomic # 16 Polarization: 113.79 SS G_CDS: -0.30 Total: 113.49 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -69.56 2.07 -67.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589921214.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.370 kcal (2) G-P(sol) polarization free energy of solvation -69.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds