Wall clock time and date at job start Wed Apr 1 2020 03:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35902 * 116.99750 * 2 1 4 4 C 1.38725 * 120.04943 * 359.72486 * 3 2 1 5 5 C 1.38242 * 119.93347 * 179.79072 * 4 3 2 6 6 Cl 1.73593 * 119.98945 * 180.23166 * 5 4 3 7 7 C 1.38410 * 120.02630 * 0.46582 * 5 4 3 8 8 C 1.38226 * 120.09553 * 359.79110 * 7 5 4 9 9 C 1.38169 * 120.06989 * 359.97186 * 8 7 5 10 10 S 1.76205 * 120.01271 * 179.97438 * 9 8 7 11 11 O 1.42108 * 106.40127 * 228.56427 * 10 9 8 12 12 O 1.42096 * 106.40165 * 1.48329 * 10 9 8 13 13 N 1.65593 * 107.21657 * 115.02835 * 10 9 8 14 14 C 1.46507 * 120.00592 * 64.99910 * 13 10 9 15 15 C 1.52996 * 109.47172 * 163.74832 * 14 13 10 16 16 C 1.50692 * 115.55366 * 65.14237 * 15 14 13 17 17 H 1.08001 * 120.00137 * 264.75893 * 16 15 14 18 18 C 1.37880 * 120.00422 * 84.75185 * 16 15 14 19 19 N 1.31521 * 119.99554 * 352.32144 * 18 16 15 20 20 Si 1.86792 * 120.00305 * 172.31731 * 18 16 15 21 21 H 1.48505 * 109.47384 * 0.02562 * 20 18 16 22 22 H 1.48491 * 109.47424 * 120.00216 * 20 18 16 23 23 H 1.48503 * 109.46876 * 240.00427 * 20 18 16 24 24 C 1.52999 * 117.49763 * 279.46891 * 15 14 13 25 25 C 1.53006 * 117.49499 * 210.81096 * 15 14 13 26 26 H 1.09004 * 109.47131 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47524 * 59.99973 * 1 2 3 28 28 H 1.09005 * 109.47108 * 299.99287 * 1 2 3 29 29 H 1.08004 * 120.03514 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.95331 * 179.76765 * 7 5 4 31 31 H 1.08007 * 119.96180 * 179.97438 * 8 7 5 32 32 H 0.97006 * 120.00106 * 244.99870 * 13 10 9 33 33 H 1.09000 * 109.46674 * 283.74977 * 14 13 10 34 34 H 1.09000 * 109.46273 * 43.74286 * 14 13 10 35 35 H 0.96997 * 119.99375 * 185.01964 * 19 18 16 36 36 H 1.09001 * 117.50072 * 0.02562 * 24 15 14 37 37 H 1.09000 * 117.50046 * 145.02451 * 24 15 14 38 38 H 1.08995 * 117.49705 * 214.98313 * 25 15 14 39 39 H 1.08999 * 117.49712 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3750 -0.0058 5 6 1.9213 3.6055 -0.0014 6 17 0.9785 5.0630 -0.0025 7 6 3.3037 3.6758 -0.0010 8 6 4.0567 2.5167 -0.0006 9 6 3.4311 1.2847 0.0000 10 16 4.3925 -0.1919 -0.0003 11 8 3.8549 -1.0206 -1.0218 12 8 5.7534 0.2153 0.0342 13 7 4.0999 -0.9675 1.4332 14 6 2.7614 -1.4866 1.7255 15 6 2.8429 -2.4852 2.8818 16 6 3.2621 -1.9092 4.2097 17 1 4.2980 -1.9488 4.5127 18 6 2.3233 -1.3316 5.0379 19 7 1.0937 -1.1463 4.6096 20 14 2.7977 -0.8121 6.7683 21 1 4.2298 -1.1264 7.0045 22 1 2.5799 0.6485 6.9240 23 1 1.9608 -1.5451 7.7521 24 6 3.2964 -3.9093 2.5546 25 6 1.8305 -3.6322 2.8972 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 0.5137 0.8901 29 1 0.2127 2.3200 -0.0107 30 1 3.7946 4.6378 -0.0013 31 1 5.1352 2.5741 -0.0007 32 1 4.8147 -1.0782 2.0796 33 1 2.1046 -0.6621 2.0030 34 1 2.3644 -1.9857 0.8415 35 1 0.4528 -0.6748 5.1643 36 1 3.5372 -4.1347 1.5157 37 1 3.8977 -4.4298 3.3000 38 1 1.4679 -3.9704 3.8679 39 1 1.1061 -3.6751 2.0838 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619529280.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:59 Heat of formation + Delta-G solvation = -64.856843 kcal Electronic energy + Delta-G solvation = -26876.649770 eV Core-core repulsion = 22938.663146 eV Total energy + Delta-G solvation = -3937.986624 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.36256 -37.92353 -37.02120 -36.71269 -36.48329 -35.41569 -33.20710 -31.97573 -31.32342 -30.40962 -27.36911 -25.93847 -24.85533 -23.38892 -22.55105 -21.12258 -19.45249 -19.22410 -18.47665 -17.31128 -16.90238 -16.48174 -16.13482 -15.95034 -15.48610 -15.13076 -14.70139 -14.57339 -14.13528 -14.09952 -13.59364 -13.50537 -12.94228 -12.74093 -12.31066 -12.16748 -12.07228 -12.01092 -11.74473 -11.66588 -11.56407 -11.29711 -11.22843 -11.05839 -11.03352 -10.92548 -10.62538 -10.49373 -10.22548 -9.55787 -9.32069 -9.02638 -8.62390 -8.56569 -8.39835 -8.14986 -6.11831 -4.17186 0.52581 0.92363 1.15544 1.76207 3.08106 3.16459 3.22240 3.31782 3.35512 3.58948 4.08305 4.33587 4.44403 4.69954 4.79068 5.05536 5.16278 5.19928 5.25586 5.31179 5.35047 5.39671 5.59651 5.69926 5.87851 5.92214 5.98375 6.30064 6.37337 6.43688 6.47488 6.64542 6.76893 7.04783 7.07195 7.13866 7.42158 7.54040 7.79154 7.83744 8.36240 8.83983 9.48772 10.96146 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.010196 B = 0.004825 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.521098 B = 5801.708265 C = 6824.401834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.291 6.291 3 C 0.246 3.754 4 C -0.222 4.222 5 C 0.053 3.947 6 Cl -0.062 7.062 7 C -0.176 4.176 8 C 0.027 3.973 9 C -0.705 4.705 10 S 2.700 3.300 11 O -0.954 6.954 12 O -0.976 6.976 13 N -1.092 6.092 14 C 0.168 3.832 15 C 0.035 3.965 16 C -0.494 4.494 17 H 0.061 0.939 18 C 0.074 3.926 19 N -0.877 5.877 20 Si 0.887 3.113 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.284 1.284 24 C -0.210 4.210 25 C -0.152 4.152 26 H 0.112 0.888 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.147 0.853 30 H 0.142 0.858 31 H 0.158 0.842 32 H 0.420 0.580 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.259 0.741 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.542 8.292 -9.586 12.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.202 6.202 3 C 0.197 3.803 4 C -0.242 4.242 5 C 0.026 3.974 6 Cl -0.032 7.032 7 C -0.195 4.195 8 C 0.008 3.992 9 C -0.790 4.790 10 S 2.787 3.213 11 O -0.944 6.944 12 O -0.966 6.966 13 N -0.855 5.855 14 C 0.042 3.958 15 C 0.032 3.968 16 C -0.532 4.532 17 H 0.079 0.921 18 C -0.129 4.129 19 N -0.513 5.513 20 Si 0.714 3.286 21 H -0.196 1.196 22 H -0.212 1.212 23 H -0.210 1.210 24 C -0.247 4.247 25 C -0.190 4.190 26 H 0.130 0.870 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.165 0.835 30 H 0.160 0.840 31 H 0.175 0.825 32 H 0.256 0.744 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.401 8.004 -10.310 13.127 hybrid contribution -0.608 1.239 1.687 2.180 sum -2.009 9.244 -8.622 12.800 Atomic orbital electron populations 1.23253 0.76710 1.05460 1.01629 1.86348 1.23103 1.24749 1.86031 1.18171 0.90341 0.84945 0.86882 1.21142 1.01153 0.90558 1.11347 1.20904 0.92107 0.87273 0.97126 1.98386 1.72746 1.35751 1.96362 1.21024 0.91448 0.99812 1.07247 1.20772 1.00735 0.89313 0.88372 1.30524 1.04416 1.20913 1.23176 1.01658 0.72648 0.73273 0.73740 1.93574 1.80267 1.64828 1.55758 1.93531 1.32467 1.83493 1.87093 1.55137 1.20908 1.71531 1.37908 1.20993 0.80147 0.97948 0.96680 1.18993 0.98965 0.84937 0.93861 1.20432 0.94166 1.39028 0.99552 0.92055 1.24950 0.94803 0.95324 0.97870 1.69976 1.03796 1.40371 1.37198 0.86628 0.78818 0.78070 0.85041 1.19642 1.21161 1.20998 1.23022 0.98609 1.03805 0.99264 1.22519 0.90382 1.05690 1.00428 0.86987 0.92403 0.91383 0.83539 0.84023 0.82491 0.74379 0.91142 0.92842 0.93144 0.91329 0.90429 0.90022 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 101.05 0.99 1.28 16 2 O -0.29 -4.66 5.54 -29.17 -0.16 -4.83 16 3 C 0.25 3.88 6.33 -39.22 -0.25 3.63 16 4 C -0.22 -3.01 8.82 -39.40 -0.35 -3.36 16 5 C 0.05 0.68 6.32 -39.52 -0.25 0.43 16 6 Cl -0.06 -0.68 28.95 -51.86 -1.50 -2.18 16 7 C -0.18 -2.16 9.83 -39.52 -0.39 -2.55 16 8 C 0.03 0.38 9.54 -39.61 -0.38 0.00 16 9 C -0.71 -11.35 5.90 -39.43 -0.23 -11.58 16 10 S 2.70 47.88 5.46 -107.50 -0.59 47.30 16 11 O -0.95 -18.99 16.75 -62.49 -1.05 -20.04 16 12 O -0.98 -18.00 16.97 -57.17 -0.97 -18.97 16 13 N -1.09 -20.67 5.95 -10.61 -0.06 -20.74 16 14 C 0.17 3.49 4.33 -4.04 -0.02 3.47 16 15 C 0.03 0.79 1.43 -155.66 -0.22 0.56 16 16 C -0.49 -12.37 8.46 -34.44 -0.29 -12.66 16 17 H 0.06 1.54 7.83 -52.49 -0.41 1.13 16 18 C 0.07 1.89 5.38 -17.82 -0.10 1.79 16 19 N -0.88 -22.78 12.98 55.43 0.72 -22.06 16 20 Si 0.89 20.11 29.55 -169.99 -5.02 15.08 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C -0.21 -4.37 9.96 -26.69 -0.27 -4.63 16 25 C -0.15 -3.33 9.49 -26.69 -0.25 -3.58 16 26 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.06 0.54 7.65 -51.93 -0.40 0.14 16 28 H 0.07 0.79 7.67 -51.93 -0.40 0.40 16 29 H 0.15 1.65 6.30 -52.48 -0.33 1.32 16 30 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.16 1.86 7.33 -52.48 -0.38 1.47 16 32 H 0.42 7.73 8.38 -34.47 -0.29 7.44 16 33 H 0.07 1.55 6.76 -51.93 -0.35 1.20 16 34 H 0.05 1.08 6.98 -51.93 -0.36 0.72 16 35 H 0.26 6.49 8.32 -40.82 -0.34 6.15 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 38 H 0.08 1.91 8.14 -51.93 -0.42 1.48 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 355.06 15.07 5.35 5.35 Total: -1.00 -30.18 355.06 -9.88 -40.05 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -4.60 Total: 8.23 kcal Atomic # 6 Polarization: -25.20 SS G_CDS: -2.00 Total: -27.20 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 0.66 Total: -42.80 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: -2.18 Total: -43.83 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 16 Polarization: 47.88 SS G_CDS: -0.59 Total: 47.30 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.18 -9.88 -40.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619529280.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.803 kcal (2) G-P(sol) polarization free energy of solvation -30.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds