Wall clock time and date at job start Wed Apr 1 2020 03:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35902 * 116.99750 * 2 1 4 4 C 1.38725 * 120.04943 * 359.72486 * 3 2 1 5 5 C 1.38242 * 119.93347 * 179.79072 * 4 3 2 6 6 Cl 1.73593 * 119.98945 * 180.23166 * 5 4 3 7 7 C 1.38410 * 120.02630 * 0.46582 * 5 4 3 8 8 C 1.38226 * 120.09553 * 359.79110 * 7 5 4 9 9 C 1.38169 * 120.06989 * 359.97186 * 8 7 5 10 10 S 1.76205 * 120.01271 * 179.97438 * 9 8 7 11 11 O 1.42108 * 106.40127 * 228.56427 * 10 9 8 12 12 O 1.42096 * 106.40165 * 1.48329 * 10 9 8 13 13 N 1.65593 * 107.21657 * 115.02835 * 10 9 8 14 14 C 1.46507 * 120.00592 * 64.99910 * 13 10 9 15 15 C 1.52996 * 109.47172 * 163.74832 * 14 13 10 16 16 C 1.50692 * 115.55366 * 65.14237 * 15 14 13 17 17 H 1.08001 * 120.00137 * 264.75893 * 16 15 14 18 18 C 1.37880 * 120.00422 * 84.75185 * 16 15 14 19 19 N 1.31521 * 119.99554 * 352.32144 * 18 16 15 20 20 Si 1.86792 * 120.00305 * 172.31731 * 18 16 15 21 21 H 1.48505 * 109.47384 * 0.02562 * 20 18 16 22 22 H 1.48491 * 109.47424 * 120.00216 * 20 18 16 23 23 H 1.48503 * 109.46876 * 240.00427 * 20 18 16 24 24 C 1.52999 * 117.49763 * 279.46891 * 15 14 13 25 25 C 1.53006 * 117.49499 * 210.81096 * 15 14 13 26 26 H 1.09004 * 109.47131 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47524 * 59.99973 * 1 2 3 28 28 H 1.09005 * 109.47108 * 299.99287 * 1 2 3 29 29 H 1.08004 * 120.03514 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.95331 * 179.76765 * 7 5 4 31 31 H 1.08007 * 119.96180 * 179.97438 * 8 7 5 32 32 H 0.97006 * 120.00106 * 244.99870 * 13 10 9 33 33 H 1.09000 * 109.46674 * 283.74977 * 14 13 10 34 34 H 1.09000 * 109.46273 * 43.74286 * 14 13 10 35 35 H 0.96997 * 119.99375 * 185.01964 * 19 18 16 36 36 H 1.09001 * 117.50072 * 0.02562 * 24 15 14 37 37 H 1.09000 * 117.50046 * 145.02451 * 24 15 14 38 38 H 1.08995 * 117.49705 * 214.98313 * 25 15 14 39 39 H 1.08999 * 117.49712 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3750 -0.0058 5 6 1.9213 3.6055 -0.0014 6 17 0.9785 5.0630 -0.0025 7 6 3.3037 3.6758 -0.0010 8 6 4.0567 2.5167 -0.0006 9 6 3.4311 1.2847 0.0000 10 16 4.3925 -0.1919 -0.0003 11 8 3.8549 -1.0206 -1.0218 12 8 5.7534 0.2153 0.0342 13 7 4.0999 -0.9675 1.4332 14 6 2.7614 -1.4866 1.7255 15 6 2.8429 -2.4852 2.8818 16 6 3.2621 -1.9092 4.2097 17 1 4.2980 -1.9488 4.5127 18 6 2.3233 -1.3316 5.0379 19 7 1.0937 -1.1463 4.6096 20 14 2.7977 -0.8121 6.7683 21 1 4.2298 -1.1264 7.0045 22 1 2.5799 0.6485 6.9240 23 1 1.9608 -1.5451 7.7521 24 6 3.2964 -3.9093 2.5546 25 6 1.8305 -3.6322 2.8972 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 0.5137 0.8901 29 1 0.2127 2.3200 -0.0107 30 1 3.7946 4.6378 -0.0013 31 1 5.1352 2.5741 -0.0007 32 1 4.8147 -1.0782 2.0796 33 1 2.1046 -0.6621 2.0030 34 1 2.3644 -1.9857 0.8415 35 1 0.4528 -0.6748 5.1643 36 1 3.5372 -4.1347 1.5157 37 1 3.8977 -4.4298 3.3000 38 1 1.4679 -3.9704 3.8679 39 1 1.1061 -3.6751 2.0838 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619529280.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:59 Heat of formation + Delta-G solvation = -83.674949 kcal Electronic energy + Delta-G solvation = -26877.465784 eV Core-core repulsion = 22938.663146 eV Total energy + Delta-G solvation = -3938.802638 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.42962 -39.03389 -38.64374 -38.12792 -37.50482 -36.88681 -34.79701 -33.88145 -32.38661 -31.44304 -28.33389 -27.77086 -26.58135 -24.49341 -23.58483 -22.85106 -21.19310 -20.51755 -19.70643 -18.63502 -18.32525 -17.81916 -17.60102 -17.14829 -16.64656 -16.53965 -16.44187 -15.79684 -15.60206 -15.18937 -15.13935 -14.58316 -14.39086 -14.04424 -13.88701 -13.68996 -13.21389 -13.14336 -13.07735 -13.03626 -12.94407 -12.89111 -12.82701 -12.72931 -12.28745 -12.14592 -12.00365 -11.97487 -11.83232 -11.31708 -10.80358 -10.43672 -10.36698 -10.12614 -9.89608 -9.59519 -8.05001 -6.13914 -0.62740 -0.39430 0.11647 0.78998 1.41167 1.47083 1.54848 1.97558 2.08368 2.28599 2.45993 2.72631 3.22921 3.29428 3.57043 3.64522 3.84932 3.94300 4.23039 4.26613 4.31284 4.36816 4.42977 4.59783 4.63075 4.73405 4.74670 4.78635 4.84680 4.93286 4.95661 5.07784 5.33161 5.37573 5.46983 5.69937 5.79115 5.85316 6.00728 6.30946 6.47843 6.90654 7.53025 9.02194 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.010196 B = 0.004825 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.521098 B = 5801.708265 C = 6824.401834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.316 6.316 3 C 0.229 3.771 4 C -0.225 4.225 5 C 0.050 3.950 6 Cl -0.042 7.042 7 C -0.170 4.170 8 C 0.021 3.979 9 C -0.724 4.724 10 S 2.716 3.284 11 O -0.980 6.980 12 O -0.986 6.986 13 N -1.097 6.097 14 C 0.184 3.816 15 C 0.012 3.988 16 C -0.503 4.503 17 H 0.054 0.946 18 C 0.035 3.965 19 N -0.896 5.896 20 Si 0.937 3.063 21 H -0.270 1.270 22 H -0.285 1.285 23 H -0.286 1.286 24 C -0.193 4.193 25 C -0.154 4.154 26 H 0.118 0.882 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.166 0.834 30 H 0.173 0.827 31 H 0.173 0.827 32 H 0.421 0.579 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.258 0.742 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.631 9.740 -9.898 13.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.228 6.228 3 C 0.179 3.821 4 C -0.245 4.245 5 C 0.023 3.977 6 Cl -0.013 7.013 7 C -0.189 4.189 8 C 0.001 3.999 9 C -0.812 4.812 10 S 2.806 3.194 11 O -0.970 6.970 12 O -0.976 6.976 13 N -0.859 5.859 14 C 0.058 3.942 15 C 0.010 3.990 16 C -0.541 4.541 17 H 0.073 0.927 18 C -0.166 4.166 19 N -0.533 5.533 20 Si 0.764 3.236 21 H -0.195 1.195 22 H -0.211 1.211 23 H -0.212 1.212 24 C -0.231 4.231 25 C -0.192 4.192 26 H 0.137 0.863 27 H 0.103 0.897 28 H 0.086 0.914 29 H 0.183 0.817 30 H 0.191 0.809 31 H 0.190 0.810 32 H 0.256 0.744 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.468 9.417 -10.618 14.268 hybrid contribution -0.621 0.877 1.757 2.059 sum -2.089 10.294 -8.862 13.742 Atomic orbital electron populations 1.23506 0.75136 1.06406 1.02899 1.86295 1.24918 1.25347 1.86208 1.18369 0.90471 0.85604 0.87626 1.21361 1.02121 0.90203 1.10852 1.21100 0.92685 0.87804 0.96141 1.98396 1.72310 1.34409 1.96155 1.21374 0.91335 1.00590 1.05598 1.21060 1.01731 0.88987 0.88075 1.30251 1.04655 1.20569 1.25738 1.00905 0.72326 0.73336 0.72785 1.93532 1.80644 1.66337 1.56506 1.93507 1.33327 1.83714 1.87068 1.55103 1.20222 1.72409 1.38118 1.20670 0.80727 0.96905 0.95874 1.19124 1.00031 0.85998 0.93890 1.20633 0.93858 1.38905 1.00684 0.92739 1.25490 0.94972 0.95746 1.00406 1.70052 1.04291 1.41006 1.37969 0.85835 0.78414 0.77521 0.81794 1.19483 1.21134 1.21190 1.23018 0.97658 1.02222 1.00168 1.22456 0.91231 1.05573 0.99965 0.86341 0.89737 0.91449 0.81671 0.80944 0.80970 0.74367 0.92577 0.92572 0.93241 0.89741 0.90303 0.91935 0.90390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.32 9.81 113.37 1.11 1.44 16 2 O -0.32 -10.04 5.54 -83.13 -0.46 -10.50 16 3 C 0.23 7.05 6.33 22.50 0.14 7.20 16 4 C -0.23 -5.76 8.82 22.39 0.20 -5.56 16 5 C 0.05 1.16 6.32 22.31 0.14 1.31 16 6 Cl -0.04 -0.81 28.95 -2.72 -0.08 -0.89 16 7 C -0.17 -3.74 9.83 22.31 0.22 -3.52 16 8 C 0.02 0.54 9.54 22.25 0.21 0.75 16 9 C -0.72 -22.84 5.90 22.37 0.13 -22.71 16 10 S 2.72 96.16 5.46 -56.49 -0.31 95.85 16 11 O -0.98 -39.16 16.75 -122.91 -2.06 -41.22 16 12 O -0.99 -36.02 16.97 -128.00 -2.17 -38.19 16 13 N -1.10 -41.66 5.95 -187.48 -1.12 -42.78 16 14 C 0.18 7.69 4.33 86.38 0.37 8.06 16 15 C 0.01 0.52 1.43 -52.93 -0.08 0.45 16 16 C -0.50 -25.22 8.46 25.60 0.22 -25.00 16 17 H 0.05 2.74 7.83 -2.91 -0.02 2.72 16 18 C 0.04 1.79 5.38 84.65 0.46 2.24 16 19 N -0.90 -46.64 12.98 21.45 0.28 -46.37 16 20 Si 0.94 41.17 29.55 68.60 2.03 43.20 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 22 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 24 C -0.19 -7.92 9.96 30.62 0.30 -7.61 16 25 C -0.15 -6.72 9.49 30.62 0.29 -6.43 16 26 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.08 1.45 7.65 -2.39 -0.02 1.43 16 28 H 0.07 1.54 7.67 -2.38 -0.02 1.52 16 29 H 0.17 3.41 6.30 -2.91 -0.02 3.40 16 30 H 0.17 2.65 8.06 -2.91 -0.02 2.62 16 31 H 0.17 3.79 7.33 -2.91 -0.02 3.77 16 32 H 0.42 15.60 8.38 -96.74 -0.81 14.79 16 33 H 0.06 2.50 6.76 -2.39 -0.02 2.49 16 34 H 0.06 2.29 6.98 -2.39 -0.02 2.27 16 35 H 0.26 12.97 8.32 -92.71 -0.77 12.20 16 36 H 0.08 3.17 8.14 -2.39 -0.02 3.16 16 37 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 38 H 0.06 2.94 8.14 -2.39 -0.02 2.93 16 39 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -62.93 355.06 0.12 -62.81 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 0.29 Total: 27.48 kcal Atomic # 6 Polarization: -53.12 SS G_CDS: 3.72 Total: -49.39 kcal Atomic # 7 Polarization: -88.31 SS G_CDS: -0.84 Total: -89.14 kcal Atomic # 8 Polarization: -85.23 SS G_CDS: -4.69 Total: -89.92 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Atomic # 16 Polarization: 96.16 SS G_CDS: -0.31 Total: 95.85 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -62.93 0.12 -62.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619529280.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.862 kcal (2) G-P(sol) polarization free energy of solvation -62.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds