Wall clock time and date at job start Wed Apr 1 2020 03:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34222 * 116.99653 * 2 1 4 4 O 1.20824 * 120.00467 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00006 * 179.97438 * 3 2 1 6 6 H 1.09007 * 109.47042 * 59.99422 * 5 3 2 7 7 N 1.46497 * 109.47430 * 180.02562 * 5 3 2 8 8 C 1.34777 * 119.99525 * 274.99668 * 7 5 3 9 9 O 1.21283 * 120.00463 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99675 * 179.72583 * 8 7 5 11 11 S 1.80997 * 109.47151 * 180.27780 * 10 8 7 12 12 C 1.76196 * 100.00314 * 179.97438 * 11 10 8 13 13 H 1.08005 * 120.00018 * 0.02562 * 12 11 10 14 14 C 1.38799 * 120.00626 * 179.97438 * 12 11 10 15 15 N 1.31633 * 119.99674 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00584 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47157 * 59.99781 * 16 14 12 18 18 H 1.48496 * 109.47271 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46802 * 300.00045 * 16 14 12 20 20 C 1.50707 * 109.47097 * 300.00348 * 5 3 2 21 21 C 1.38202 * 119.99857 * 264.99837 * 20 5 3 22 22 C 1.38427 * 119.99993 * 179.97438 * 21 20 5 23 23 F 1.35105 * 119.99943 * 179.97438 * 22 21 20 24 24 C 1.38467 * 120.00075 * 359.97438 * 22 21 20 25 25 C 1.38162 * 120.00052 * 0.02562 * 24 22 21 26 26 C 1.38424 * 120.00163 * 84.71643 * 20 5 3 27 27 F 1.35105 * 120.00157 * 0.03141 * 26 20 5 28 28 H 1.08999 * 109.46792 * 59.99884 * 1 2 3 29 29 H 1.09000 * 109.46805 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47262 * 299.99933 * 1 2 3 31 31 H 0.97000 * 120.00580 * 95.00414 * 7 5 3 32 32 H 1.09009 * 109.47352 * 300.27556 * 10 8 7 33 33 H 1.08998 * 109.47585 * 60.27844 * 10 8 7 34 34 H 0.97003 * 120.00297 * 179.97438 * 15 14 12 35 35 H 1.08000 * 120.00283 * 359.97438 * 21 20 5 36 36 H 1.08002 * 120.00053 * 179.97438 * 24 22 21 37 37 H 1.08000 * 120.00403 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9565 0.7805 -0.8891 7 7 3.9817 2.6798 0.0011 8 6 4.0757 3.3550 -1.1615 9 8 3.8160 2.7998 -2.2081 10 6 4.4970 4.8019 -1.1605 11 16 4.5197 5.4249 -2.8598 12 6 5.0296 7.0863 -2.5699 13 1 5.2221 7.4241 -1.5622 14 6 5.1850 7.9609 -3.6364 15 7 4.9519 7.5488 -4.8647 16 14 5.7263 9.7221 -3.3291 17 1 7.0559 9.7231 -2.6678 18 1 5.8170 10.4450 -4.6230 19 1 4.7368 10.3981 -2.4521 20 6 4.1047 0.5920 1.2314 21 6 4.3946 1.3326 2.3617 22 6 4.8886 0.7052 3.4924 23 9 5.1725 1.4293 4.5971 24 6 5.0919 -0.6644 3.4912 25 6 4.8021 -1.4049 2.3613 26 6 4.3034 -0.7779 1.2319 27 9 4.0153 -1.5027 0.1287 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.1892 3.1240 0.8381 32 1 3.7913 5.3855 -0.5691 33 1 5.4936 4.8900 -0.7280 34 1 5.0601 8.1601 -5.6101 35 1 4.2357 2.4008 2.3627 36 1 5.4777 -1.1539 4.3733 37 1 4.9610 -2.4731 2.3602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726928431.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:15 Heat of formation + Delta-G solvation = -171.473001 kcal Electronic energy + Delta-G solvation = -27298.186472 eV Core-core repulsion = 22803.779944 eV Total energy + Delta-G solvation = -4494.406528 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.068 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.36895 -49.30878 -41.08040 -39.52972 -38.92728 -36.63846 -35.19919 -32.43363 -32.11145 -30.83385 -29.54548 -28.43514 -26.62038 -25.46446 -23.62605 -23.06092 -21.37584 -20.46638 -18.61614 -18.14555 -17.84721 -17.63512 -17.42989 -17.12626 -16.54610 -16.28739 -16.16062 -15.74993 -15.64851 -14.92742 -14.81217 -14.79920 -14.75694 -14.03081 -14.00648 -13.78971 -13.56944 -13.29188 -13.05719 -12.62455 -12.59986 -12.46111 -12.23371 -12.00953 -11.63324 -11.05503 -11.03649 -10.95125 -10.92813 -10.77994 -9.85616 -9.80408 -9.61796 -9.37149 -9.05913 -9.01702 -8.26739 -6.51326 -6.21890 -3.92971 0.32256 0.44016 1.98667 2.20263 2.70177 2.93282 3.07868 3.24074 3.26597 3.29728 3.51237 3.57437 3.66824 3.85595 4.07385 4.19724 4.34907 4.53267 4.62774 4.80155 4.93898 4.99946 5.03307 5.12210 5.13337 5.33760 5.36297 5.40341 5.44717 5.50404 5.62471 5.83858 6.06762 6.12672 6.18392 6.22061 7.36387 7.55117 7.59190 8.34519 8.36887 9.23252 10.85512 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.013850 B = 0.002797 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.207478 B =10009.114771 C =11102.209895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.452 3.548 4 O -0.481 6.481 5 C 0.205 3.795 6 H 0.144 0.856 7 N -0.719 5.719 8 C 0.542 3.458 9 O -0.507 6.507 10 C -0.152 4.152 11 S -0.056 6.056 12 C -0.537 4.537 13 H 0.073 0.927 14 C 0.074 3.926 15 N -0.868 5.868 16 Si 0.920 3.080 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C -0.103 4.103 21 C -0.114 4.114 22 C 0.095 3.905 23 F -0.130 7.130 24 C -0.116 4.116 25 C -0.121 4.121 26 C 0.122 3.878 27 F -0.119 7.119 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.062 0.938 31 H 0.405 0.595 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.269 0.731 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.279 -20.458 19.231 28.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.269 6.269 3 C 0.291 3.709 4 O -0.365 6.365 5 C 0.096 3.904 6 H 0.161 0.839 7 N -0.377 5.377 8 C 0.329 3.671 9 O -0.379 6.379 10 C -0.302 4.302 11 S 0.171 5.829 12 C -0.685 4.685 13 H 0.091 0.909 14 C -0.135 4.135 15 N -0.503 5.503 16 Si 0.746 3.254 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.199 1.199 20 C -0.105 4.105 21 C -0.133 4.133 22 C 0.076 3.924 23 F -0.109 7.109 24 C -0.135 4.135 25 C -0.140 4.140 26 C 0.102 3.898 27 F -0.097 7.097 28 H 0.084 0.916 29 H 0.120 0.880 30 H 0.080 0.920 31 H 0.242 0.758 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.166 0.834 36 H 0.168 0.832 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.961 -21.005 17.249 27.340 hybrid contribution 0.428 2.089 1.802 2.792 sum -2.533 -18.915 19.051 26.966 Atomic orbital electron populations 1.23295 0.76047 1.03703 1.02756 1.86506 1.23579 1.32782 1.84070 1.23953 0.91793 0.82030 0.73111 1.90718 1.66158 1.36217 1.43451 1.18871 0.87429 0.85363 0.98701 0.83918 1.45913 1.71151 1.09818 1.10771 1.20463 0.75558 0.88494 0.82537 1.90722 1.46992 1.69226 1.30963 1.23520 1.04307 0.93279 1.09101 1.85416 1.89350 1.10756 0.97389 1.22826 1.53340 0.96299 0.96047 0.90871 1.24991 0.94882 0.99251 0.94405 1.70007 1.45724 1.36092 0.98461 0.86210 0.79175 0.82350 0.77695 1.19908 1.20810 1.19913 1.19336 1.03389 0.92501 0.95287 1.20791 1.00108 1.01418 0.91029 1.17498 1.01537 0.89667 0.83699 1.91557 1.91186 1.77539 1.50609 1.21093 1.00792 0.91912 0.99699 1.21021 1.00184 1.01645 0.91155 1.17343 0.99792 0.88131 0.84526 1.91589 1.90698 1.76884 1.50528 0.91563 0.87966 0.91963 0.75762 0.88689 0.88775 0.92095 0.83444 0.83231 0.82936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.40 16 2 O -0.35 -4.33 10.34 -39.24 -0.41 -4.74 16 3 C 0.45 6.51 7.28 36.01 0.26 6.77 16 4 O -0.48 -8.37 16.07 -18.75 -0.30 -8.67 16 5 C 0.20 2.64 2.46 -70.23 -0.17 2.47 16 6 H 0.14 1.95 7.24 -51.93 -0.38 1.58 16 7 N -0.72 -10.01 4.53 -56.06 -0.25 -10.26 16 8 C 0.54 10.24 7.68 -10.98 -0.08 10.16 16 9 O -0.51 -11.48 15.53 5.55 0.09 -11.40 16 10 C -0.15 -3.07 6.16 36.01 0.22 -2.84 16 11 S -0.06 -1.51 20.57 -107.50 -2.21 -3.73 16 12 C -0.54 -15.31 9.50 30.94 0.29 -15.01 16 13 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 14 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 15 N -0.87 -26.23 13.22 55.49 0.73 -25.49 16 16 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 20 C -0.10 -1.01 4.99 -104.56 -0.52 -1.53 16 21 C -0.11 -0.97 9.21 -39.52 -0.36 -1.34 16 22 C 0.10 0.74 7.30 -39.43 -0.29 0.45 16 23 F -0.13 -1.12 17.27 2.25 0.04 -1.08 16 24 C -0.12 -0.68 10.02 -39.52 -0.40 -1.08 16 25 C -0.12 -0.74 10.02 -39.52 -0.40 -1.14 16 26 C 0.12 1.07 7.17 -39.43 -0.28 0.79 16 27 F -0.12 -1.19 16.49 2.25 0.04 -1.16 16 28 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.40 4.36 6.20 -40.82 -0.25 4.11 16 32 H 0.09 1.81 8.14 -51.91 -0.42 1.38 16 33 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 34 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.15 1.10 6.07 -52.49 -0.32 0.78 16 36 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 37 H 0.15 0.55 8.06 -52.49 -0.42 0.12 16 LS Contribution 355.17 15.07 5.35 5.35 Total: -1.00 -36.50 355.17 -6.16 -42.65 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -3.45 Total: 0.98 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -0.76 Total: 1.13 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.48 Total: -35.75 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.62 Total: -24.81 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.08 Total: -2.24 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.50 -6.16 -42.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726928431.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.822 kcal (2) G-P(sol) polarization free energy of solvation -36.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds