Wall clock time and date at job start Wed Apr 1 2020 03:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34222 * 116.99653 * 2 1 4 4 O 1.20824 * 120.00467 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00006 * 179.97438 * 3 2 1 6 6 H 1.09007 * 109.47042 * 59.99422 * 5 3 2 7 7 N 1.46497 * 109.47430 * 180.02562 * 5 3 2 8 8 C 1.34777 * 119.99525 * 274.99668 * 7 5 3 9 9 O 1.21283 * 120.00463 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99675 * 179.72583 * 8 7 5 11 11 S 1.80997 * 109.47151 * 180.27780 * 10 8 7 12 12 C 1.76196 * 100.00314 * 179.97438 * 11 10 8 13 13 H 1.08005 * 120.00018 * 0.02562 * 12 11 10 14 14 C 1.38799 * 120.00626 * 179.97438 * 12 11 10 15 15 N 1.31633 * 119.99674 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00584 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47157 * 59.99781 * 16 14 12 18 18 H 1.48496 * 109.47271 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46802 * 300.00045 * 16 14 12 20 20 C 1.50707 * 109.47097 * 300.00348 * 5 3 2 21 21 C 1.38202 * 119.99857 * 264.99837 * 20 5 3 22 22 C 1.38427 * 119.99993 * 179.97438 * 21 20 5 23 23 F 1.35105 * 119.99943 * 179.97438 * 22 21 20 24 24 C 1.38467 * 120.00075 * 359.97438 * 22 21 20 25 25 C 1.38162 * 120.00052 * 0.02562 * 24 22 21 26 26 C 1.38424 * 120.00163 * 84.71643 * 20 5 3 27 27 F 1.35105 * 120.00157 * 0.03141 * 26 20 5 28 28 H 1.08999 * 109.46792 * 59.99884 * 1 2 3 29 29 H 1.09000 * 109.46805 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47262 * 299.99933 * 1 2 3 31 31 H 0.97000 * 120.00580 * 95.00414 * 7 5 3 32 32 H 1.09009 * 109.47352 * 300.27556 * 10 8 7 33 33 H 1.08998 * 109.47585 * 60.27844 * 10 8 7 34 34 H 0.97003 * 120.00297 * 179.97438 * 15 14 12 35 35 H 1.08000 * 120.00283 * 359.97438 * 21 20 5 36 36 H 1.08002 * 120.00053 * 179.97438 * 24 22 21 37 37 H 1.08000 * 120.00403 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9565 0.7805 -0.8891 7 7 3.9817 2.6798 0.0011 8 6 4.0757 3.3550 -1.1615 9 8 3.8160 2.7998 -2.2081 10 6 4.4970 4.8019 -1.1605 11 16 4.5197 5.4249 -2.8598 12 6 5.0296 7.0863 -2.5699 13 1 5.2221 7.4241 -1.5622 14 6 5.1850 7.9609 -3.6364 15 7 4.9519 7.5488 -4.8647 16 14 5.7263 9.7221 -3.3291 17 1 7.0559 9.7231 -2.6678 18 1 5.8170 10.4450 -4.6230 19 1 4.7368 10.3981 -2.4521 20 6 4.1047 0.5920 1.2314 21 6 4.3946 1.3326 2.3617 22 6 4.8886 0.7052 3.4924 23 9 5.1725 1.4293 4.5971 24 6 5.0919 -0.6644 3.4912 25 6 4.8021 -1.4049 2.3613 26 6 4.3034 -0.7779 1.2319 27 9 4.0153 -1.5027 0.1287 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.1892 3.1240 0.8381 32 1 3.7913 5.3855 -0.5691 33 1 5.4936 4.8900 -0.7280 34 1 5.0601 8.1601 -5.6101 35 1 4.2357 2.4008 2.3627 36 1 5.4777 -1.1539 4.3733 37 1 4.9610 -2.4731 2.3602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726928431.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:14 Heat of formation + Delta-G solvation = -195.634811 kcal Electronic energy + Delta-G solvation = -27299.234207 eV Core-core repulsion = 22803.779944 eV Total energy + Delta-G solvation = -4495.454262 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.068 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.01089 -49.98430 -42.18795 -40.66224 -39.90438 -37.76038 -36.35281 -34.59419 -33.18699 -31.49974 -30.78934 -29.41813 -27.79757 -27.40446 -24.30607 -23.84775 -22.46200 -21.70739 -20.06307 -19.28076 -18.88974 -18.55449 -18.42611 -18.06135 -17.64436 -17.48531 -16.96839 -16.88429 -16.79989 -16.38140 -16.29633 -15.82740 -15.52298 -15.39812 -15.06862 -14.80858 -14.56659 -14.49663 -14.25656 -13.73847 -13.69781 -13.49665 -13.22542 -13.18708 -12.94430 -12.87016 -12.65435 -12.26506 -12.06333 -11.92724 -11.77431 -11.26003 -11.13638 -10.70353 -10.32727 -10.31565 -9.66492 -8.69070 -8.35437 -6.14215 -0.30277 -0.13720 0.86899 1.01208 1.27260 1.42879 1.44240 1.53288 1.67078 2.00257 2.26023 2.29560 2.77472 2.98864 3.03310 3.19631 3.25270 3.46255 3.58118 3.71803 3.85808 3.90020 4.10837 4.22122 4.24042 4.25087 4.44039 4.45013 4.61930 4.72230 4.81329 4.88995 4.96592 5.00171 5.13596 5.41064 5.62762 6.12078 6.18975 6.45302 6.93606 7.05681 8.73648 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.013850 B = 0.002797 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.207478 B =10009.114771 C =11102.209895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.453 3.547 4 O -0.519 6.519 5 C 0.206 3.794 6 H 0.132 0.868 7 N -0.697 5.697 8 C 0.545 3.455 9 O -0.552 6.552 10 C -0.129 4.129 11 S -0.146 6.146 12 C -0.548 4.548 13 H 0.085 0.915 14 C 0.014 3.986 15 N -0.911 5.911 16 Si 0.999 3.001 17 H -0.260 1.260 18 H -0.279 1.279 19 H -0.263 1.263 20 C -0.117 4.117 21 C -0.120 4.120 22 C 0.089 3.911 23 F -0.136 7.136 24 C -0.099 4.099 25 C -0.108 4.108 26 C 0.110 3.890 27 F -0.130 7.130 28 H 0.053 0.947 29 H 0.140 0.860 30 H 0.067 0.933 31 H 0.421 0.579 32 H 0.110 0.890 33 H 0.121 0.879 34 H 0.272 0.728 35 H 0.152 0.848 36 H 0.183 0.817 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.418 -21.254 22.351 30.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.266 6.266 3 C 0.294 3.706 4 O -0.407 6.407 5 C 0.098 3.902 6 H 0.149 0.851 7 N -0.354 5.354 8 C 0.333 3.667 9 O -0.428 6.428 10 C -0.280 4.280 11 S 0.082 5.918 12 C -0.696 4.696 13 H 0.103 0.897 14 C -0.191 4.191 15 N -0.548 5.548 16 Si 0.821 3.179 17 H -0.184 1.184 18 H -0.204 1.204 19 H -0.188 1.188 20 C -0.118 4.118 21 C -0.139 4.139 22 C 0.069 3.931 23 F -0.114 7.114 24 C -0.117 4.117 25 C -0.126 4.126 26 C 0.090 3.910 27 F -0.109 7.109 28 H 0.072 0.928 29 H 0.158 0.842 30 H 0.086 0.914 31 H 0.262 0.738 32 H 0.128 0.872 33 H 0.139 0.861 34 H 0.081 0.919 35 H 0.170 0.830 36 H 0.200 0.800 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -2.098 -21.837 20.433 29.980 hybrid contribution 0.109 2.154 0.961 2.361 sum -1.988 -19.683 21.394 29.139 Atomic orbital electron populations 1.23616 0.74356 1.06079 1.02450 1.86502 1.25226 1.31518 1.83365 1.24219 0.92338 0.82068 0.71996 1.90697 1.67087 1.37389 1.45524 1.18889 0.86852 0.84310 1.00190 0.85090 1.45568 1.69515 1.10407 1.09959 1.20211 0.75268 0.88097 0.83172 1.90707 1.49281 1.69962 1.32861 1.23351 1.06421 0.94138 1.04075 1.85588 1.89765 1.12079 1.04412 1.23184 1.53258 0.96385 0.96784 0.89709 1.26138 0.94618 1.04396 0.93942 1.70177 1.47016 1.37951 0.99634 0.84990 0.79259 0.75824 0.77842 1.18445 1.20400 1.18772 1.19078 1.05401 0.93032 0.94337 1.20817 1.00325 1.01703 0.91046 1.17633 1.01761 0.90481 0.83205 1.91550 1.91260 1.77855 1.50742 1.21469 0.98764 0.90961 1.00507 1.21346 0.98373 1.03102 0.89790 1.17615 1.00485 0.87745 0.85134 1.91562 1.90935 1.77013 1.51341 0.92783 0.84243 0.91425 0.73802 0.87155 0.86089 0.91950 0.83045 0.79986 0.79833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.70 16 2 O -0.35 -8.51 10.34 -51.34 -0.53 -9.05 16 3 C 0.45 13.23 7.28 71.24 0.52 13.75 16 4 O -0.52 -18.51 16.07 21.97 0.35 -18.16 16 5 C 0.21 5.34 2.46 43.50 0.11 5.45 16 6 H 0.13 3.74 7.24 -2.38 -0.02 3.72 16 7 N -0.70 -19.34 4.53 -449.67 -2.04 -21.37 16 8 C 0.55 20.95 7.68 87.66 0.67 21.62 16 9 O -0.55 -26.09 15.53 -3.04 -0.05 -26.14 16 10 C -0.13 -5.21 6.16 71.24 0.44 -4.77 16 11 S -0.15 -8.18 20.57 -56.49 -1.16 -9.34 16 12 C -0.55 -31.51 9.50 67.95 0.65 -30.87 16 13 H 0.08 4.49 7.80 -2.91 -0.02 4.47 16 14 C 0.01 0.80 5.49 84.86 0.47 1.26 16 15 N -0.91 -56.40 13.22 21.65 0.29 -56.11 16 16 Si 1.00 43.81 29.55 68.60 2.03 45.83 16 17 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 18 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 20 C -0.12 -2.17 4.99 -19.83 -0.10 -2.27 16 21 C -0.12 -1.85 9.21 22.31 0.21 -1.64 16 22 C 0.09 1.14 7.30 22.37 0.16 1.30 16 23 F -0.14 -2.00 17.27 44.97 0.78 -1.23 16 24 C -0.10 -0.77 10.02 22.31 0.22 -0.55 16 25 C -0.11 -0.94 10.02 22.31 0.22 -0.72 16 26 C 0.11 1.75 7.17 22.37 0.16 1.91 16 27 F -0.13 -2.49 16.49 44.97 0.74 -1.75 16 28 H 0.05 1.12 8.13 -2.39 -0.02 1.10 16 29 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.07 1.16 8.13 -2.39 -0.02 1.14 16 31 H 0.42 8.69 6.20 -92.71 -0.58 8.12 16 32 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 33 H 0.12 4.22 8.14 -2.40 -0.02 4.20 16 34 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 35 H 0.15 2.06 6.07 -2.91 -0.02 2.04 16 36 H 0.18 0.28 8.06 -2.91 -0.02 0.25 16 37 H 0.18 0.47 8.06 -2.91 -0.02 0.45 16 Total: -1.00 -82.70 355.17 5.91 -76.80 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.57 Total: 14.32 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 4.92 Total: 6.18 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -1.75 Total: -77.48 kcal Atomic # 8 Polarization: -53.11 SS G_CDS: -0.23 Total: -53.34 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 1.52 Total: -2.98 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -8.18 SS G_CDS: -1.16 Total: -9.34 kcal Total: -82.70 5.91 -76.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726928431.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.836 kcal (2) G-P(sol) polarization free energy of solvation -82.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds