Wall clock time and date at job start Wed Apr 1 2020 03:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46779 * 2 1 4 4 O 1.42894 * 109.47146 * 120.00361 * 2 1 3 5 5 C 1.35971 * 116.99780 * 275.00029 * 4 2 1 6 6 C 1.38685 * 120.03636 * 5.48756 * 5 4 2 7 7 C 1.38163 * 119.98420 * 180.25349 * 6 5 4 8 8 C 1.38465 * 120.04884 * 359.47647 * 7 6 5 9 9 F 1.35097 * 119.96471 * 180.25659 * 8 7 6 10 10 C 1.38435 * 120.07074 * 0.27116 * 8 7 6 11 11 C 1.38265 * 120.01766 * 359.97438 * 10 8 7 12 12 Cl 1.73598 * 120.02948 * 180.02562 * 11 10 8 13 13 C 1.50703 * 109.46964 * 240.00344 * 2 1 3 14 14 O 1.20826 * 119.99619 * 244.99700 * 13 2 1 15 15 O 1.34230 * 120.00134 * 64.99773 * 13 2 1 16 16 C 1.45198 * 116.99960 * 180.02562 * 15 13 2 17 17 C 1.50702 * 109.47039 * 180.02562 * 16 15 13 18 18 O 1.21292 * 120.00109 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99684 * 179.97438 * 17 16 15 20 20 C 1.37096 * 119.99653 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00346 * 359.97438 * 20 19 17 22 22 C 1.38955 * 120.00065 * 180.02562 * 20 19 17 23 23 N 1.31405 * 119.99835 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00001 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47223 * 59.99790 * 24 22 20 26 26 H 1.48502 * 109.46919 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47363 * 299.99533 * 24 22 20 28 28 H 1.09010 * 109.46968 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47239 * 299.99577 * 1 2 3 30 30 H 1.08994 * 109.47793 * 60.00092 * 1 2 3 31 31 H 1.07999 * 120.00831 * 0.02592 * 6 5 4 32 32 H 1.07993 * 119.97221 * 179.74648 * 7 6 5 33 33 H 1.07997 * 119.99670 * 180.02562 * 10 8 7 34 34 H 1.09007 * 109.46682 * 299.99794 * 16 15 13 35 35 H 1.08998 * 109.47193 * 59.99396 * 16 15 13 36 36 H 0.96997 * 120.00519 * 359.97438 * 19 17 16 37 37 H 0.96998 * 120.00296 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.1125 0.0629 2.3047 6 6 1.6594 1.3734 2.3281 7 6 1.7726 2.1226 3.4835 8 6 2.3283 1.5625 4.6213 9 9 2.4334 2.2949 5.7517 10 6 2.7766 0.2529 4.6019 11 6 2.6693 -0.4978 3.4457 12 17 3.2308 -2.1403 3.4212 13 6 2.0323 -0.7104 -1.2305 14 8 2.6507 -1.7427 -1.1220 15 8 1.7928 -0.1962 -2.4471 16 6 2.3059 -0.9343 -3.5874 17 6 1.9436 -0.2105 -4.8586 18 8 1.3144 0.8253 -4.8085 19 7 2.3187 -0.7141 -6.0511 20 6 1.9896 -0.0553 -7.2075 21 1 1.4294 0.8669 -7.1629 22 6 2.3759 -0.5748 -8.4370 23 7 3.0571 -1.6972 -8.4913 24 14 1.9268 0.3224 -10.0127 25 1 2.5224 1.6827 -9.9948 26 1 2.4521 -0.4322 -11.1788 27 1 0.4494 0.4302 -10.1171 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.2214 1.8094 1.4424 32 1 1.4234 3.1443 3.5003 33 1 3.2095 -0.1829 5.4902 34 1 3.3904 -1.0130 -3.5110 35 1 1.8692 -1.9328 -3.6002 36 1 2.8222 -1.5422 -6.0912 37 1 3.3271 -2.0596 -9.3496 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733566177.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:53 Heat of formation + Delta-G solvation = -194.477153 kcal Electronic energy + Delta-G solvation = -26408.192202 eV Core-core repulsion = 21898.371644 eV Total energy + Delta-G solvation = -4509.820558 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.066 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.93684 -42.16245 -41.20394 -40.03922 -38.71677 -37.54835 -37.41823 -36.03526 -33.57521 -33.37264 -32.08082 -30.46287 -30.02185 -26.84088 -25.88225 -24.56270 -23.65954 -21.97022 -21.44742 -20.09686 -19.83516 -19.01387 -18.68658 -18.13411 -17.88041 -17.66907 -17.12029 -16.87400 -16.48089 -16.45803 -15.96816 -15.87784 -15.67850 -15.58216 -15.03236 -14.65811 -14.49379 -14.33173 -13.87324 -13.79694 -13.75038 -13.55087 -13.30548 -12.98606 -12.92810 -12.58090 -12.48354 -12.27003 -12.12899 -12.06817 -11.98781 -11.93889 -11.56638 -11.55381 -10.52429 -10.16764 -10.12209 -9.29967 -8.52117 -6.02881 -0.16364 -0.07472 0.77834 0.90208 1.01163 1.38093 1.43939 1.54926 1.86654 2.07448 2.26497 2.31632 2.93019 3.13461 3.16824 3.39187 3.49664 3.60176 3.68886 3.76581 3.93952 4.00140 4.09618 4.12518 4.20227 4.42938 4.58896 4.64985 4.75286 4.91336 4.94229 5.09728 5.16624 5.37141 5.44181 5.88154 5.93637 6.41668 6.52025 7.02482 7.39449 7.92014 8.64504 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.024691 B = 0.001916 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.731782 B =14606.622309 C =15362.787189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.099 3.901 3 H 0.144 0.856 4 O -0.296 6.296 5 C 0.118 3.882 6 C -0.165 4.165 7 C -0.094 4.094 8 C 0.068 3.932 9 F -0.137 7.137 10 C -0.106 4.106 11 C -0.057 4.057 12 Cl -0.054 7.054 13 C 0.462 3.538 14 O -0.515 6.515 15 O -0.330 6.330 16 C 0.071 3.929 17 C 0.438 3.562 18 O -0.614 6.614 19 N -0.558 5.558 20 C -0.337 4.337 21 H 0.087 0.913 22 C -0.010 4.010 23 N -0.916 5.916 24 Si 0.998 3.002 25 H -0.269 1.269 26 H -0.272 1.272 27 H -0.269 1.269 28 H 0.068 0.932 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.177 0.823 32 H 0.176 0.824 33 H 0.165 0.835 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.400 0.600 37 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.388 4.511 25.643 26.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.042 3.958 3 H 0.161 0.839 4 O -0.209 6.209 5 C 0.072 3.928 6 C -0.183 4.183 7 C -0.112 4.112 8 C 0.048 3.952 9 F -0.116 7.116 10 C -0.126 4.126 11 C -0.085 4.085 12 Cl -0.025 7.025 13 C 0.304 3.696 14 O -0.403 6.403 15 O -0.245 6.245 16 C -0.006 4.006 17 C 0.225 3.775 18 O -0.501 6.501 19 N -0.195 5.195 20 C -0.466 4.466 21 H 0.105 0.895 22 C -0.211 4.211 23 N -0.555 5.555 24 Si 0.821 3.179 25 H -0.194 1.194 26 H -0.196 1.196 27 H -0.194 1.194 28 H 0.087 0.913 29 H 0.127 0.873 30 H 0.116 0.884 31 H 0.194 0.806 32 H 0.193 0.807 33 H 0.183 0.817 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.234 0.766 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.432 4.420 25.507 26.001 hybrid contribution 0.486 -0.554 -0.772 1.067 sum -1.946 3.865 24.735 25.110 Atomic orbital electron populations 1.22387 0.89095 1.04968 1.06424 1.21876 0.97718 0.96958 0.79277 0.83897 1.86223 1.81361 1.37384 1.15958 1.18895 0.96889 0.91444 0.85602 1.21455 1.03930 0.91690 1.01263 1.21379 0.97364 1.02342 0.90129 1.17471 1.04093 0.89736 0.83880 1.91525 1.94394 1.76540 1.49133 1.20958 1.00895 0.92746 0.97967 1.20004 1.06005 0.88684 0.93762 1.98404 1.87773 1.17643 1.98676 1.23708 0.76800 0.83816 0.85264 1.90703 1.38038 1.24292 1.87263 1.86490 1.71793 1.52076 1.14135 1.22582 1.01180 0.95172 0.81661 1.19993 0.85205 0.87394 0.84917 1.90525 1.45545 1.26697 1.87317 1.41744 1.49263 1.24260 1.04255 1.19694 1.35244 1.07865 0.83831 0.89516 1.26144 0.95820 0.96874 1.02237 1.69664 1.37383 1.20069 1.28424 0.84908 0.78809 0.78054 0.76112 1.19415 1.19617 1.19393 0.91277 0.87318 0.88432 0.80593 0.80701 0.81736 0.87530 0.87459 0.76602 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 9.15 71.98 0.66 -1.95 16 2 C 0.10 1.96 2.75 29.85 0.08 2.04 16 3 H 0.14 1.99 6.31 -2.39 -0.02 1.97 16 4 O -0.30 -6.67 8.80 -74.19 -0.65 -7.32 16 5 C 0.12 2.12 6.59 22.51 0.15 2.27 16 6 C -0.16 -1.91 8.24 22.36 0.18 -1.73 16 7 C -0.09 -0.95 10.02 22.31 0.22 -0.73 16 8 C 0.07 0.91 7.30 22.37 0.16 1.08 16 9 F -0.14 -2.03 17.27 44.97 0.78 -1.26 16 10 C -0.11 -1.55 9.81 22.32 0.22 -1.34 16 11 C -0.06 -1.05 6.33 22.41 0.14 -0.91 16 12 Cl -0.05 -1.15 28.50 -2.72 -0.08 -1.23 16 13 C 0.46 13.49 7.29 71.24 0.52 14.00 16 14 O -0.52 -18.01 16.26 28.38 0.46 -17.55 16 15 O -0.33 -11.08 9.75 -45.06 -0.44 -11.52 16 16 C 0.07 2.55 5.94 71.24 0.42 2.97 16 17 C 0.44 20.50 7.86 87.66 0.69 21.19 16 18 O -0.61 -33.18 16.08 15.73 0.25 -32.93 16 19 N -0.56 -27.82 5.29 -306.98 -1.62 -29.45 16 20 C -0.34 -18.45 9.68 84.04 0.81 -17.64 16 21 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 22 C -0.01 -0.51 5.50 84.93 0.47 -0.05 16 23 N -0.92 -47.98 13.05 21.66 0.28 -47.69 16 24 Si 1.00 41.16 29.55 68.60 2.03 43.19 16 25 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 26 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 27 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 28 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.11 1.01 6.91 -2.38 -0.02 0.99 16 30 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.18 1.16 5.42 -2.91 -0.02 1.15 16 32 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16 33 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.11 3.46 8.13 -2.38 -0.02 3.44 16 35 H 0.11 3.47 8.13 -2.39 -0.02 3.45 16 36 H 0.40 18.88 7.90 -92.71 -0.73 18.15 16 37 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -70.57 353.00 6.17 -64.40 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.43 Total: 22.13 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: 4.73 Total: 19.22 kcal Atomic # 7 Polarization: -75.80 SS G_CDS: -1.34 Total: -77.14 kcal Atomic # 8 Polarization: -68.94 SS G_CDS: -0.38 Total: -69.31 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.78 Total: -1.26 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal Total: -70.57 6.17 -64.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733566177.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.074 kcal (2) G-P(sol) polarization free energy of solvation -70.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds