Wall clock time and date at job start Wed Apr 1 2020 03:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46865 * 2 1 4 4 O 1.45192 * 109.47147 * 239.99665 * 2 1 3 5 5 C 1.34230 * 117.00018 * 90.00298 * 4 2 1 6 6 O 1.20826 * 120.00015 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00046 * 180.02562 * 5 4 2 8 8 S 1.81002 * 109.47156 * 179.97438 * 7 5 4 9 9 C 1.76193 * 100.00049 * 180.02562 * 8 7 5 10 10 N 1.30308 * 126.17159 * 0.02562 * 9 8 7 11 11 N 1.26104 * 117.60720 * 179.97438 * 10 9 8 12 12 C 1.29328 * 117.97298 * 0.02562 * 11 10 9 13 13 S 1.76479 * 107.87951 * 359.75612 * 12 11 10 14 14 C 1.50707 * 109.46853 * 119.99578 * 2 1 3 15 15 O 1.21279 * 119.99714 * 120.00298 * 14 2 1 16 16 N 1.34774 * 120.00009 * 299.99744 * 14 2 1 17 17 C 1.46495 * 120.00096 * 0.02562 * 16 14 2 18 18 C 1.46498 * 119.99793 * 179.97438 * 16 14 2 19 19 C 1.50704 * 109.47165 * 90.00170 * 18 16 14 20 20 H 1.08002 * 119.99632 * 0.02562 * 19 18 16 21 21 C 1.37874 * 119.99842 * 179.97438 * 19 18 16 22 22 N 1.31516 * 119.99410 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00317 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47130 * 89.99728 * 23 21 19 25 25 H 1.48505 * 109.46925 * 209.99525 * 23 21 19 26 26 H 1.48500 * 109.47081 * 329.99487 * 23 21 19 27 27 H 1.08998 * 109.47227 * 60.00014 * 1 2 3 28 28 H 1.09003 * 109.46963 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47099 * 300.00576 * 1 2 3 30 30 H 1.09002 * 109.47060 * 299.99765 * 7 5 4 31 31 H 1.09001 * 109.47380 * 59.99853 * 7 5 4 32 32 H 1.07998 * 126.05836 * 179.97438 * 12 11 10 33 33 H 1.08998 * 109.47508 * 89.99513 * 17 16 14 34 34 H 1.09001 * 109.47038 * 209.99730 * 17 16 14 35 35 H 1.08997 * 109.47469 * 329.99179 * 17 16 14 36 36 H 1.08997 * 109.47132 * 210.00436 * 18 16 14 37 37 H 1.09003 * 109.46966 * 330.00327 * 18 16 14 38 38 H 0.97007 * 120.00151 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1854 5 6 2.2172 0.0639 -2.2810 6 8 1.9975 1.2516 -2.2506 7 6 2.7183 -0.5774 -3.5494 8 16 2.8889 0.6837 -4.8365 9 6 3.4711 -0.3138 -6.1670 10 7 3.6855 -1.5986 -6.1284 11 7 4.1042 -2.1530 -7.1808 12 6 4.2924 -1.4115 -8.2235 13 16 3.8629 0.2456 -7.7946 14 6 2.0323 -0.7104 1.2306 15 8 2.7296 -1.6964 1.1194 16 7 1.7067 -0.2498 2.4546 17 6 0.8641 0.9410 2.5889 18 6 2.1946 -0.9407 3.6508 19 6 3.5223 -0.3578 4.0612 20 1 3.9588 0.4471 3.4885 21 6 4.1792 -0.8513 5.1684 22 7 5.3381 -0.3429 5.5262 23 14 3.4238 -2.2430 6.1593 24 1 3.8838 -3.5454 5.6140 25 1 3.8438 -2.1246 7.5788 26 1 1.9433 -2.1653 6.0730 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.6872 -1.0410 -3.3638 31 1 2.0088 -1.3371 -3.8773 32 1 4.6461 -1.7475 -9.1870 33 1 -0.1837 0.6428 2.6224 34 1 1.1219 1.4667 3.5084 35 1 1.0273 1.5998 1.7360 36 1 1.4765 -0.8151 4.4612 37 1 2.3153 -2.0020 3.4336 38 1 5.8005 -0.6904 6.3050 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775968959.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:08 Heat of formation + Delta-G solvation = -56.592583 kcal Electronic energy + Delta-G solvation = -24553.769071 eV Core-core repulsion = 20650.477270 eV Total energy + Delta-G solvation = -3903.291801 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.065 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.10767 -42.01180 -40.66550 -37.89130 -36.80333 -34.90244 -33.44897 -32.84493 -31.45914 -30.06493 -27.91953 -27.78969 -25.89064 -24.31517 -22.63091 -22.41095 -20.56533 -20.41615 -19.30852 -19.14146 -18.71247 -18.13678 -17.74079 -17.45418 -16.75537 -16.73179 -16.54411 -16.41865 -15.73048 -15.10984 -15.08293 -14.57884 -14.52850 -14.43608 -14.39848 -14.12109 -13.75637 -13.65786 -13.48556 -13.06179 -12.84422 -12.59468 -12.37915 -12.34612 -12.06013 -12.04666 -11.94950 -11.91401 -11.76076 -11.61164 -11.33256 -10.84723 -10.76814 -10.72198 -9.52142 -9.02458 -8.35378 -6.41561 -0.80805 -0.69800 0.02593 0.27632 0.51539 0.77003 1.24016 1.33809 1.37946 1.41027 1.45966 1.53882 2.23898 2.30482 2.99013 3.22793 3.32571 3.44433 3.69722 3.71622 3.81286 3.81574 4.11396 4.28907 4.45574 4.50436 4.61254 4.62650 4.77330 4.85044 4.90379 5.08937 5.11427 5.42139 5.49717 6.18140 6.27054 6.50433 6.60059 7.12153 7.25992 7.37006 8.81543 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.020179 B = 0.002073 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.267773 B =13502.444076 C =14144.022802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.078 3.922 3 H 0.117 0.883 4 O -0.334 6.334 5 C 0.487 3.513 6 O -0.508 6.508 7 C -0.128 4.128 8 S 0.120 5.880 9 C -0.041 4.041 10 N -0.298 5.298 11 N -0.292 5.292 12 C 0.021 3.979 13 S 0.163 5.837 14 C 0.500 3.500 15 O -0.576 6.576 16 N -0.595 5.595 17 C 0.065 3.935 18 C 0.224 3.776 19 C -0.540 4.540 20 H 0.027 0.973 21 C 0.009 3.991 22 N -0.945 5.945 23 Si 0.950 3.050 24 H -0.278 1.278 25 H -0.275 1.275 26 H -0.232 1.232 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.143 0.857 31 H 0.157 0.843 32 H 0.263 0.737 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.022 0.978 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.862 4.108 -27.689 30.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.020 3.980 3 H 0.135 0.865 4 O -0.249 6.249 5 C 0.329 3.671 6 O -0.397 6.397 7 C -0.277 4.277 8 S 0.349 5.651 9 C -0.429 4.429 10 N -0.141 5.141 11 N -0.126 5.126 12 C -0.283 4.283 13 S 0.401 5.599 14 C 0.287 3.713 15 O -0.456 6.456 16 N -0.327 5.327 17 C -0.077 4.077 18 C 0.102 3.898 19 C -0.579 4.579 20 H 0.045 0.955 21 C -0.189 4.189 22 N -0.585 5.585 23 Si 0.772 3.228 24 H -0.204 1.204 25 H -0.201 1.201 26 H -0.155 1.155 27 H 0.108 0.892 28 H 0.092 0.908 29 H 0.134 0.866 30 H 0.161 0.839 31 H 0.175 0.825 32 H 0.279 0.721 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.080 0.920 37 H 0.040 0.960 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.692 4.823 -27.332 30.117 hybrid contribution 0.982 -1.803 0.695 2.168 sum -10.710 3.020 -26.637 28.868 Atomic orbital electron populations 1.22447 0.88489 1.04947 1.06540 1.22652 0.98345 0.96680 0.80326 0.86534 1.86582 1.76724 1.41839 1.19778 1.22794 0.74002 0.85332 0.85018 1.90695 1.48544 1.16332 1.84108 1.23405 1.09881 1.02973 0.91490 1.86328 1.78191 1.04137 0.96475 1.31935 1.07220 0.98602 1.05108 1.71770 1.16465 1.05362 1.20456 1.70694 1.13908 1.31692 0.96284 1.32004 1.01496 0.90424 1.04381 1.85706 1.60137 1.12434 1.01633 1.20641 0.80525 0.84881 0.85247 1.90679 1.39266 1.28781 1.86853 1.47794 1.50232 1.29730 1.04979 1.22316 0.94956 0.86130 1.04256 1.19443 0.93922 0.92861 0.83598 1.21549 1.05222 1.19403 1.11699 0.95479 1.25895 0.95043 0.99474 0.98459 1.70057 1.16615 1.44308 1.27528 0.85689 0.80965 0.78512 0.77629 1.20356 1.20053 1.15486 0.89165 0.90845 0.86589 0.83894 0.82483 0.72123 0.88547 0.90680 0.89587 0.92025 0.96025 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.43 9.18 71.98 0.66 -2.76 16 2 C 0.08 2.37 2.18 29.85 0.07 2.43 16 3 H 0.12 3.38 6.42 -2.39 -0.02 3.36 16 4 O -0.33 -10.46 9.41 -45.06 -0.42 -10.89 16 5 C 0.49 12.74 7.95 71.24 0.57 13.30 16 6 O -0.51 -14.27 15.08 21.97 0.33 -13.94 16 7 C -0.13 -2.62 5.81 71.24 0.41 -2.20 16 8 S 0.12 2.22 21.45 -56.49 -1.21 1.00 16 9 C -0.04 -0.75 7.85 130.47 1.02 0.27 16 10 N -0.30 -6.71 10.96 -54.83 -0.60 -7.31 16 11 N -0.29 -5.90 11.55 -57.40 -0.66 -6.56 16 12 C 0.02 0.22 12.68 130.61 1.66 1.88 16 13 S 0.16 1.80 23.54 -56.49 -1.33 0.48 16 14 C 0.50 20.61 7.15 87.66 0.63 21.24 16 15 O -0.58 -29.89 16.08 15.77 0.25 -29.64 16 16 N -0.60 -23.45 2.86 -851.15 -2.43 -25.88 16 17 C 0.06 1.69 8.80 127.77 1.12 2.82 16 18 C 0.22 10.63 4.23 85.63 0.36 10.99 16 19 C -0.54 -31.65 9.94 25.60 0.25 -31.39 16 20 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 21 C 0.01 0.55 5.47 84.65 0.46 1.02 16 22 N -0.95 -59.91 13.96 21.45 0.30 -59.61 16 23 Si 0.95 43.95 27.47 68.60 1.88 45.83 16 24 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 25 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 26 H -0.23 -9.41 6.54 99.48 0.65 -8.76 16 27 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.12 1.86 4.53 -2.39 -0.01 1.84 16 30 H 0.14 2.97 8.14 -2.39 -0.02 2.95 16 31 H 0.16 2.69 8.14 -2.40 -0.02 2.67 16 32 H 0.26 0.09 8.06 -2.91 -0.02 0.06 16 33 H 0.10 1.75 6.95 -2.39 -0.02 1.73 16 34 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 35 H 0.09 1.85 6.01 -2.39 -0.01 1.84 16 36 H 0.06 2.60 7.13 -2.39 -0.02 2.59 16 37 H 0.02 1.11 6.85 -2.39 -0.02 1.09 16 38 H 0.27 15.81 8.31 -92.70 -0.77 15.04 16 Total: -1.00 -85.88 357.30 4.39 -81.50 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: 1.06 Total: 7.43 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 7.22 Total: 17.59 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -3.40 Total: -99.37 kcal Atomic # 8 Polarization: -54.63 SS G_CDS: 0.16 Total: -54.47 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.88 Total: 45.83 kcal Atomic # 16 Polarization: 4.02 SS G_CDS: -2.54 Total: 1.48 kcal Total: -85.88 4.39 -81.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775968959.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.906 kcal (2) G-P(sol) polarization free energy of solvation -85.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds