Wall clock time and date at job start Wed Apr 1 2020 03:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81396 * 109.47462 * 2 1 4 4 O 1.42100 * 110.54554 * 68.37192 * 3 2 1 5 5 O 1.42108 * 110.54027 * 291.62373 * 3 2 1 6 6 C 1.76199 * 104.45330 * 180.02562 * 3 2 1 7 7 C 1.38417 * 119.91080 * 89.99539 * 6 3 2 8 8 C 1.38265 * 120.31861 * 180.02562 * 7 6 3 9 9 C 1.38159 * 120.13163 * 359.97438 * 8 7 6 10 10 Cl 1.73597 * 120.09608 * 179.97438 * 9 8 7 11 11 C 1.39693 * 119.81215 * 359.97438 * 9 8 7 12 12 C 1.47766 * 120.15638 * 180.02562 * 11 9 8 13 13 O 1.21565 * 119.99693 * 359.97438 * 12 11 9 14 14 N 1.34777 * 120.00147 * 180.02562 * 12 11 9 15 15 C 1.46506 * 119.99873 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47035 * 179.97438 * 15 14 12 17 17 C 1.50696 * 109.47300 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99822 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00339 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99769 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00300 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47118 * 89.99790 * 21 19 17 23 23 H 1.48499 * 109.47134 * 210.00310 * 21 19 17 24 24 H 1.48507 * 109.46904 * 330.00133 * 21 19 17 25 25 C 1.37905 * 119.90751 * 270.23475 * 6 3 2 26 26 H 1.08994 * 109.47203 * 300.00368 * 1 2 3 27 27 H 1.09004 * 109.46751 * 60.00025 * 1 2 3 28 28 H 1.08996 * 109.47098 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47551 * 239.99727 * 2 1 3 30 30 H 1.09003 * 109.47248 * 120.00154 * 2 1 3 31 31 H 1.08003 * 119.84194 * 359.97438 * 7 6 3 32 32 H 1.07999 * 119.93712 * 179.97438 * 8 7 6 33 33 H 0.96999 * 120.00047 * 359.97438 * 14 12 11 34 34 H 1.09004 * 109.47073 * 299.99562 * 15 14 12 35 35 H 1.09000 * 109.47212 * 59.99645 * 15 14 12 36 36 H 1.09004 * 109.46930 * 299.99770 * 16 15 14 37 37 H 1.09004 * 109.47059 * 59.99372 * 16 15 14 38 38 H 0.97000 * 120.00540 * 179.97438 * 20 19 17 39 39 H 1.07992 * 120.06404 * 0.03875 * 25 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3439 1.2369 5 8 1.8386 2.3437 -1.2371 6 6 3.8900 1.5560 -0.0008 7 6 4.5770 1.4956 -1.2009 8 6 5.9543 1.3741 -1.2113 9 6 6.6541 1.3126 -0.0217 10 17 8.3832 1.1593 -0.0359 11 6 5.9664 1.3740 1.1927 12 6 6.7073 1.3095 2.4695 13 8 7.9182 1.2021 2.4648 14 7 6.0405 1.3685 3.6393 15 6 6.7752 1.3039 4.9052 16 6 5.7893 1.3918 6.0720 17 6 6.5448 1.3248 7.3742 18 1 7.6205 1.2286 7.3700 19 6 5.8629 1.3861 8.5709 20 7 4.5529 1.5027 8.5760 21 14 6.7995 1.3037 10.1850 22 1 7.1718 2.6764 10.6119 23 1 5.9421 0.6778 11.2234 24 1 8.0292 0.4914 10.0028 25 6 4.5750 1.4907 1.1943 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 4.0346 1.5429 -2.1336 32 1 6.4841 1.3271 -2.1512 33 1 5.0743 1.4538 3.6431 34 1 7.3213 0.3622 4.9607 35 1 7.4779 2.1354 4.9603 36 1 5.2435 2.3337 6.0163 37 1 5.0862 0.5607 6.0170 38 1 4.0730 1.5455 9.4178 39 1 4.0366 1.5334 2.1295 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784137242.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:25 Heat of formation + Delta-G solvation = -87.188435 kcal Electronic energy + Delta-G solvation = -24983.407858 eV Core-core repulsion = 21044.452864 eV Total energy + Delta-G solvation = -3938.954994 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.34484 -38.47235 -37.44254 -36.70764 -36.26813 -34.98190 -33.61223 -33.01094 -31.88703 -31.51358 -29.47694 -25.35336 -24.67632 -23.96286 -23.31833 -21.27158 -20.62088 -19.22701 -18.57085 -17.07351 -16.96504 -16.50821 -16.39633 -16.19455 -15.80096 -15.18333 -14.87825 -14.76301 -14.57002 -14.45916 -13.97721 -13.68501 -13.42780 -13.06625 -12.95955 -12.88296 -12.48445 -12.40999 -12.31813 -12.19474 -12.01275 -11.97847 -11.49426 -11.27709 -11.15556 -11.05417 -10.87381 -10.65186 -10.37621 -9.76066 -9.59862 -9.47630 -9.46450 -9.21502 -8.60868 -8.39520 -6.10244 -4.13470 -0.38741 0.14006 0.49652 1.79883 2.39988 2.54058 3.29082 3.33064 3.36017 3.37591 3.41850 3.55647 3.70473 4.12859 4.14890 4.29436 4.35743 4.41550 4.74018 4.74663 4.80945 4.94433 5.13253 5.22916 5.23835 5.26641 5.26817 5.43927 5.49587 5.60035 6.06291 6.27698 6.29390 6.67123 6.77592 7.48206 7.58470 7.83000 7.87843 8.24095 8.45347 8.92184 9.51499 11.01268 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.009739 B = 0.003154 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.474288 B = 8875.568667 C =11407.830174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.607 4.607 3 S 2.496 3.504 4 O -0.925 6.925 5 O -0.934 6.934 6 C -0.670 4.670 7 C 0.005 3.995 8 C -0.141 4.141 9 C 0.060 3.940 10 Cl -0.014 7.014 11 C -0.140 4.140 12 C 0.542 3.458 13 O -0.521 6.521 14 N -0.714 5.714 15 C 0.122 3.878 16 C 0.011 3.989 17 C -0.523 4.523 18 H 0.059 0.941 19 C 0.060 3.940 20 N -0.893 5.893 21 Si 0.897 3.103 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.019 3.981 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.397 0.603 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.024 0.976 37 H 0.023 0.977 38 H 0.262 0.738 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.527 -4.044 -24.120 25.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.737 4.737 3 S 2.674 3.326 4 O -0.922 6.922 5 O -0.931 6.931 6 C -0.756 4.756 7 C -0.014 4.014 8 C -0.161 4.161 9 C 0.032 3.968 10 Cl 0.016 6.984 11 C -0.144 4.144 12 C 0.327 3.673 13 O -0.398 6.398 14 N -0.365 5.365 15 C 0.001 3.999 16 C -0.027 4.027 17 C -0.561 4.561 18 H 0.078 0.922 19 C -0.142 4.142 20 N -0.531 5.531 21 Si 0.724 3.276 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.001 4.001 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.154 0.846 30 H 0.158 0.842 31 H 0.172 0.828 32 H 0.167 0.833 33 H 0.231 0.769 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.043 0.957 37 H 0.042 0.958 38 H 0.072 0.928 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -6.060 -3.363 -23.946 24.929 hybrid contribution 0.762 -0.690 0.940 1.393 sum -5.298 -4.053 -23.006 23.953 Atomic orbital electron populations 1.21576 0.89997 1.05474 1.03886 1.30200 1.07364 1.23725 1.12451 1.05673 0.73920 0.77927 0.75033 1.93633 1.82729 1.71757 1.44062 1.93577 1.82991 1.72011 1.44526 1.30689 1.26720 1.19187 0.98974 1.21055 0.93920 0.89417 0.97019 1.21211 0.94282 1.03312 0.97261 1.21425 0.87454 0.94240 0.93723 1.98452 1.06696 1.94579 1.98688 1.20154 0.93728 1.06459 0.94106 1.17953 0.87451 0.78544 0.83360 1.90856 1.12817 1.48997 1.87118 1.46318 1.11100 1.72619 1.06424 1.21811 0.96061 1.01088 0.80969 1.19352 0.94278 0.98021 0.91012 1.21021 0.93689 1.51118 0.90305 0.92228 1.24990 0.94892 0.94945 0.99393 1.69952 1.06539 1.49835 1.26804 0.86513 0.79752 0.78311 0.82975 1.20544 1.21161 1.19749 1.21171 0.92871 0.88330 0.97693 0.90440 0.90766 0.89543 0.84550 0.84186 0.82797 0.83270 0.76854 0.92167 0.92163 0.95729 0.95843 0.92795 0.82703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.92 37.16 0.37 -0.36 16 2 C -0.61 -2.89 6.70 37.16 0.25 -2.64 16 3 S 2.50 21.06 5.15 -107.50 -0.55 20.51 16 4 O -0.92 -11.25 17.12 -57.54 -0.99 -12.24 16 5 O -0.93 -9.83 17.11 -57.54 -0.98 -10.81 16 6 C -0.67 -6.24 5.65 -39.64 -0.22 -6.46 16 7 C 0.01 0.04 9.46 -39.51 -0.37 -0.33 16 8 C -0.14 -1.27 9.82 -39.60 -0.39 -1.66 16 9 C 0.06 0.74 6.35 -39.07 -0.25 0.49 16 10 Cl -0.01 -0.19 26.02 -51.86 -1.35 -1.54 16 11 C -0.14 -1.90 5.88 -104.94 -0.62 -2.52 16 12 C 0.54 9.23 7.77 -12.37 -0.10 9.14 16 13 O -0.52 -10.26 13.97 5.31 0.07 -10.18 16 14 N -0.71 -12.37 5.51 -61.27 -0.34 -12.70 16 15 C 0.12 2.55 5.61 -4.04 -0.02 2.53 16 16 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 17 C -0.52 -14.35 9.11 -34.44 -0.31 -14.67 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 21 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 C 0.02 0.22 8.96 -39.19 -0.35 -0.14 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.14 0.33 8.14 -51.92 -0.42 -0.09 16 30 H 0.14 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.15 0.81 7.56 -52.48 -0.40 0.41 16 32 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 33 H 0.40 5.95 6.51 -40.82 -0.27 5.69 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.16 1.59 5.92 -52.49 -0.31 1.27 16 LS Contribution 362.17 15.07 5.46 5.46 Total: -1.00 -36.06 362.17 -9.96 -46.02 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -4.74 Total: -0.66 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -2.26 Total: -14.93 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.40 Total: -37.87 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -1.90 Total: -33.23 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 21.06 SS G_CDS: -0.55 Total: 20.51 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.35 Total: -1.54 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.06 -9.96 -46.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784137242.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.166 kcal (2) G-P(sol) polarization free energy of solvation -36.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds