Wall clock time and date at job start Wed Apr 1 2020 03:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47443 * 2 1 4 4 O 1.45203 * 109.47182 * 119.99961 * 2 1 3 5 5 C 1.34232 * 117.00018 * 270.00239 * 4 2 1 6 6 O 1.20827 * 119.99870 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99911 * 180.02562 * 5 4 2 8 8 C 1.50698 * 109.46891 * 180.02562 * 7 5 4 9 9 C 1.33349 * 125.19137 * 90.00301 * 8 7 5 10 10 C 1.38474 * 114.93280 * 179.97438 * 9 8 7 11 11 C 1.33503 * 114.88161 * 359.97438 * 10 9 8 12 12 Cl 1.73598 * 125.20701 * 180.02562 * 11 10 9 13 13 S 1.75879 * 125.18710 * 269.69111 * 8 7 5 14 14 C 1.50694 * 109.47283 * 240.00023 * 2 1 3 15 15 O 1.21284 * 119.99983 * 256.02647 * 14 2 1 16 16 N 1.34772 * 120.00249 * 76.02711 * 14 2 1 17 17 C 1.46499 * 119.99831 * 5.36421 * 16 14 2 18 18 C 1.46495 * 120.00509 * 185.36481 * 16 14 2 19 19 C 1.50705 * 109.46962 * 89.99756 * 18 16 14 20 20 H 1.07995 * 120.00479 * 0.02562 * 19 18 16 21 21 C 1.37878 * 119.99655 * 180.02562 * 19 18 16 22 22 N 1.31517 * 120.00159 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00062 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47060 * 59.99663 * 23 21 19 25 25 H 1.48492 * 109.47399 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.46799 * 300.00465 * 23 21 19 27 27 H 1.08993 * 109.46912 * 66.13862 * 1 2 3 28 28 H 1.08998 * 109.47191 * 186.13607 * 1 2 3 29 29 H 1.09003 * 109.47248 * 306.13581 * 1 2 3 30 30 H 1.09005 * 109.46890 * 299.99439 * 7 5 4 31 31 H 1.08996 * 109.47321 * 59.99751 * 7 5 4 32 32 H 1.08003 * 122.53548 * 359.97272 * 9 8 7 33 33 H 1.07997 * 122.55959 * 179.97438 * 10 9 8 34 34 H 1.09000 * 109.47308 * 84.82542 * 17 16 14 35 35 H 1.09007 * 109.47636 * 204.82669 * 17 16 14 36 36 H 1.09005 * 109.47174 * 324.82221 * 17 16 14 37 37 H 1.09001 * 109.47433 * 209.99751 * 18 16 14 38 38 H 1.09003 * 109.47474 * 330.00141 * 18 16 14 39 39 H 0.97006 * 119.99583 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2171 0.0640 2.2812 6 8 1.9981 1.2519 2.2504 7 6 2.7193 -0.5770 3.5492 8 6 2.8609 0.4730 4.6209 9 6 1.9059 0.8259 5.4820 10 6 2.2666 1.8162 6.3801 11 6 3.5163 2.2667 6.2475 12 17 4.2449 3.5002 7.2279 13 16 4.3137 1.4144 4.9316 14 6 2.0323 -0.7104 -1.2304 15 8 2.4736 -1.8367 -1.1427 16 7 1.9913 -0.0942 -2.4283 17 6 1.5690 1.3058 -2.5177 18 6 2.3689 -0.8242 -3.6410 19 6 1.1506 -1.4918 -4.2252 20 1 0.1910 -1.3828 -3.7419 21 6 1.2612 -2.2417 -5.3769 22 7 2.4298 -2.3748 -5.9653 23 14 -0.2490 -3.0687 -6.1016 24 1 -1.2631 -2.0381 -6.4405 25 1 0.1340 -3.8098 -7.3301 26 1 -0.8184 -4.0161 -5.1098 27 1 -0.3633 0.4157 -0.9398 28 1 -0.3633 -1.0218 0.1098 29 1 -0.3634 0.6060 0.8300 30 1 2.0104 -1.3373 3.8774 31 1 3.6884 -1.0400 3.3632 32 1 0.9252 0.3736 5.4792 33 1 1.5888 2.1952 7.1306 34 1 2.4229 1.9558 -2.3267 35 1 1.1774 1.5043 -3.5155 36 1 0.7925 1.4991 -1.7776 37 1 2.7861 -0.1284 -4.3689 38 1 3.1137 -1.5804 -3.3928 39 1 2.5074 -2.9022 -6.7758 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801484625.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:00 Heat of formation + Delta-G solvation = -86.781706 kcal Electronic energy + Delta-G solvation = -24787.513031 eV Core-core repulsion = 20848.575673 eV Total energy + Delta-G solvation = -3938.937357 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.80779 -39.09067 -38.35312 -37.04846 -36.40322 -34.92011 -33.00127 -32.63113 -31.48139 -27.86286 -27.62036 -26.09806 -24.66980 -23.89893 -22.62747 -21.02358 -19.84839 -18.89372 -18.02015 -17.88780 -16.69435 -16.54967 -16.45301 -15.89893 -15.87584 -15.10275 -14.70254 -14.41253 -14.18833 -13.93265 -13.67248 -13.43331 -13.33245 -13.12709 -12.79502 -12.38762 -12.33257 -12.13087 -12.09596 -11.86027 -11.75658 -11.47950 -11.45286 -11.25925 -11.07111 -10.96081 -10.77058 -10.66607 -10.56948 -10.20678 -9.70852 -9.00935 -8.93391 -8.88877 -8.47794 -7.75741 -6.08894 -4.14491 0.34894 0.71130 1.41558 1.83870 2.04269 2.11149 2.56467 3.19573 3.29025 3.33843 3.37142 3.85772 4.09458 4.39826 4.61788 4.67771 4.82828 4.87045 5.00218 5.03155 5.07553 5.15640 5.25549 5.49380 5.50857 5.62721 5.65270 5.70193 5.83645 5.91284 6.04910 6.20801 6.35715 6.95443 7.36621 7.43082 7.61999 7.86695 8.16327 8.25618 8.79957 8.95030 9.50613 10.99112 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.031073 B = 0.001952 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.882357 B =14339.828108 C =14474.844496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.071 3.929 3 H 0.103 0.897 4 O -0.324 6.324 5 C 0.459 3.541 6 O -0.499 6.499 7 C -0.043 4.043 8 C -0.165 4.165 9 C -0.113 4.113 10 C -0.117 4.117 11 C -0.149 4.149 12 Cl -0.016 7.016 13 S 0.172 5.828 14 C 0.510 3.490 15 O -0.521 6.521 16 N -0.596 5.596 17 C 0.073 3.927 18 C 0.246 3.754 19 C -0.531 4.531 20 H 0.058 0.942 21 C 0.062 3.938 22 N -0.893 5.893 23 Si 0.899 3.101 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.276 1.276 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.047 0.953 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.036 0.964 38 H 0.046 0.954 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.164 10.012 24.939 26.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.013 3.987 3 H 0.121 0.879 4 O -0.240 6.240 5 C 0.301 3.699 6 O -0.387 6.387 7 C -0.082 4.082 8 C -0.283 4.283 9 C -0.144 4.144 10 C -0.149 4.149 11 C -0.293 4.293 12 Cl 0.013 6.987 13 S 0.436 5.564 14 C 0.294 3.706 15 O -0.396 6.396 16 N -0.330 5.330 17 C -0.071 4.071 18 C 0.127 3.873 19 C -0.569 4.569 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.532 5.532 23 Si 0.727 3.273 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.201 1.201 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.149 0.851 31 H 0.140 0.860 32 H 0.167 0.833 33 H 0.168 0.832 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.961 9.865 24.202 26.209 hybrid contribution -2.264 -0.096 0.160 2.271 sum -0.303 9.769 24.362 26.249 Atomic orbital electron populations 1.22158 0.92044 1.04146 1.03834 1.22692 0.96093 0.97369 0.82574 0.87933 1.86619 1.76413 1.41397 1.19532 1.23472 0.74887 0.86065 0.85492 1.90680 1.47527 1.16342 1.84135 1.19753 1.05633 0.95917 0.86926 1.23890 0.98059 1.03934 1.02409 1.19949 1.00363 0.98455 0.95603 1.20148 0.94763 0.98294 1.01700 1.25274 0.98770 1.02367 1.02883 1.98372 1.82127 1.50537 1.67673 1.84489 1.13015 1.31909 1.27027 1.19754 0.80236 0.86840 0.83792 1.90697 1.45189 1.18392 1.85336 1.48081 1.65232 1.11918 1.07721 1.21839 0.99008 0.82646 1.03568 1.19369 0.96698 0.92068 0.79148 1.21380 0.94740 1.31572 1.09245 0.92410 1.24944 0.96284 0.96117 0.96732 1.69925 1.23200 1.40348 1.19697 0.86540 0.82743 0.79622 0.78411 1.20212 1.21136 1.20132 0.89447 0.90596 0.91266 0.85123 0.86029 0.83283 0.83241 0.93400 0.90041 0.92257 0.94621 0.93558 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.19 37.16 0.34 -1.92 16 2 C 0.07 1.15 2.14 -27.89 -0.06 1.09 16 3 H 0.10 1.54 6.31 -51.93 -0.33 1.21 16 4 O -0.32 -5.07 9.47 -45.75 -0.43 -5.51 16 5 C 0.46 5.92 7.92 36.01 0.29 6.20 16 6 O -0.50 -7.36 15.25 -18.75 -0.29 -7.64 16 7 C -0.04 -0.37 6.31 -29.04 -0.18 -0.56 16 8 C -0.16 -1.50 5.00 -36.02 -0.18 -1.68 16 9 C -0.11 -0.93 10.05 -41.20 -0.41 -1.34 16 10 C -0.12 -0.95 10.13 -41.15 -0.42 -1.37 16 11 C -0.15 -1.35 7.10 29.08 0.21 -1.15 16 12 Cl -0.02 -0.13 29.29 -51.86 -1.52 -1.65 16 13 S 0.17 1.60 23.33 -107.50 -2.51 -0.91 16 14 C 0.51 10.74 6.95 -10.99 -0.08 10.66 16 15 O -0.52 -13.24 16.13 -13.54 -0.22 -13.46 16 16 N -0.60 -12.52 2.86 -182.95 -0.52 -13.04 16 17 C 0.07 1.14 9.79 59.85 0.59 1.73 16 18 C 0.25 6.34 5.18 -5.19 -0.03 6.31 16 19 C -0.53 -14.72 9.39 -34.44 -0.32 -15.04 16 20 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 21 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 22 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 23 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H 0.09 1.16 6.32 -51.93 -0.33 0.83 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.15 0.93 8.06 -52.48 -0.42 0.50 16 33 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 1.28 8.03 -51.93 -0.42 0.86 16 36 H 0.06 0.77 4.92 -51.93 -0.26 0.52 16 37 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 38 H 0.05 1.35 7.36 -51.93 -0.38 0.97 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 369.03 15.07 5.56 5.56 Total: -1.00 -34.20 369.03 -9.20 -43.41 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -4.63 Total: -2.33 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -0.36 Total: 4.57 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.21 Total: -38.49 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.94 Total: -26.61 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.51 Total: -0.91 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.52 Total: -1.65 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.20 -9.20 -43.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801484625.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.376 kcal (2) G-P(sol) polarization free energy of solvation -34.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds