Wall clock time and date at job start Wed Apr 1 2020 03:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47443 * 2 1 4 4 O 1.45203 * 109.47182 * 119.99961 * 2 1 3 5 5 C 1.34232 * 117.00018 * 270.00239 * 4 2 1 6 6 O 1.20827 * 119.99870 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99911 * 180.02562 * 5 4 2 8 8 C 1.50698 * 109.46891 * 180.02562 * 7 5 4 9 9 C 1.33349 * 125.19137 * 90.00301 * 8 7 5 10 10 C 1.38474 * 114.93280 * 179.97438 * 9 8 7 11 11 C 1.33503 * 114.88161 * 359.97438 * 10 9 8 12 12 Cl 1.73598 * 125.20701 * 180.02562 * 11 10 9 13 13 S 1.75879 * 125.18710 * 269.69111 * 8 7 5 14 14 C 1.50694 * 109.47283 * 240.00023 * 2 1 3 15 15 O 1.21284 * 119.99983 * 256.02647 * 14 2 1 16 16 N 1.34772 * 120.00249 * 76.02711 * 14 2 1 17 17 C 1.46499 * 119.99831 * 5.36421 * 16 14 2 18 18 C 1.46495 * 120.00509 * 185.36481 * 16 14 2 19 19 C 1.50705 * 109.46962 * 89.99756 * 18 16 14 20 20 H 1.07995 * 120.00479 * 0.02562 * 19 18 16 21 21 C 1.37878 * 119.99655 * 180.02562 * 19 18 16 22 22 N 1.31517 * 120.00159 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00062 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47060 * 59.99663 * 23 21 19 25 25 H 1.48492 * 109.47399 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.46799 * 300.00465 * 23 21 19 27 27 H 1.08993 * 109.46912 * 66.13862 * 1 2 3 28 28 H 1.08998 * 109.47191 * 186.13607 * 1 2 3 29 29 H 1.09003 * 109.47248 * 306.13581 * 1 2 3 30 30 H 1.09005 * 109.46890 * 299.99439 * 7 5 4 31 31 H 1.08996 * 109.47321 * 59.99751 * 7 5 4 32 32 H 1.08003 * 122.53548 * 359.97272 * 9 8 7 33 33 H 1.07997 * 122.55959 * 179.97438 * 10 9 8 34 34 H 1.09000 * 109.47308 * 84.82542 * 17 16 14 35 35 H 1.09007 * 109.47636 * 204.82669 * 17 16 14 36 36 H 1.09005 * 109.47174 * 324.82221 * 17 16 14 37 37 H 1.09001 * 109.47433 * 209.99751 * 18 16 14 38 38 H 1.09003 * 109.47474 * 330.00141 * 18 16 14 39 39 H 0.97006 * 119.99583 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2171 0.0640 2.2812 6 8 1.9981 1.2519 2.2504 7 6 2.7193 -0.5770 3.5492 8 6 2.8609 0.4730 4.6209 9 6 1.9059 0.8259 5.4820 10 6 2.2666 1.8162 6.3801 11 6 3.5163 2.2667 6.2475 12 17 4.2449 3.5002 7.2279 13 16 4.3137 1.4144 4.9316 14 6 2.0323 -0.7104 -1.2304 15 8 2.4736 -1.8367 -1.1427 16 7 1.9913 -0.0942 -2.4283 17 6 1.5690 1.3058 -2.5177 18 6 2.3689 -0.8242 -3.6410 19 6 1.1506 -1.4918 -4.2252 20 1 0.1910 -1.3828 -3.7419 21 6 1.2612 -2.2417 -5.3769 22 7 2.4298 -2.3748 -5.9653 23 14 -0.2490 -3.0687 -6.1016 24 1 -1.2631 -2.0381 -6.4405 25 1 0.1340 -3.8098 -7.3301 26 1 -0.8184 -4.0161 -5.1098 27 1 -0.3633 0.4157 -0.9398 28 1 -0.3633 -1.0218 0.1098 29 1 -0.3634 0.6060 0.8300 30 1 2.0104 -1.3373 3.8774 31 1 3.6884 -1.0400 3.3632 32 1 0.9252 0.3736 5.4792 33 1 1.5888 2.1952 7.1306 34 1 2.4229 1.9558 -2.3267 35 1 1.1774 1.5043 -3.5155 36 1 0.7925 1.4991 -1.7776 37 1 2.7861 -0.1284 -4.3689 38 1 3.1137 -1.5804 -3.3928 39 1 2.5074 -2.9022 -6.7758 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000801484625.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:00 Heat of formation + Delta-G solvation = -106.102921 kcal Electronic energy + Delta-G solvation = -24788.350862 eV Core-core repulsion = 20848.575673 eV Total energy + Delta-G solvation = -3939.775188 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.95339 -40.58124 -39.08193 -37.82894 -37.43783 -36.68249 -34.86025 -33.64569 -32.70496 -29.71512 -28.36449 -27.57538 -26.06776 -24.97700 -24.04733 -22.13359 -20.50818 -20.39256 -19.10020 -18.69511 -18.68685 -17.95294 -17.42831 -17.37814 -16.77410 -16.62768 -16.23801 -15.96458 -15.13878 -14.80570 -14.64978 -14.47172 -14.35460 -14.10883 -14.02715 -13.83305 -13.63420 -13.55006 -13.32677 -13.13652 -12.91515 -12.78733 -12.65532 -12.52221 -12.50975 -12.19384 -12.10611 -11.93725 -11.74455 -11.72220 -11.67303 -10.64090 -10.63068 -9.64763 -9.56490 -9.52764 -8.22636 -6.37673 -0.31941 0.05855 0.77098 1.05277 1.16692 1.27241 1.38582 1.42800 1.49612 1.59384 1.69349 2.34347 2.45936 3.07472 3.39287 3.39877 3.64260 3.82557 3.84893 4.07274 4.28064 4.29011 4.45728 4.53633 4.58624 4.60291 4.64023 4.85687 4.91063 4.94186 5.03542 5.08765 5.19952 5.28886 5.35087 5.51426 5.78011 6.03084 6.51530 6.64386 6.71094 7.19351 7.35809 8.84662 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.031073 B = 0.001952 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.882357 B =14339.828108 C =14474.844496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.082 3.918 3 H 0.119 0.881 4 O -0.342 6.342 5 C 0.460 3.540 6 O -0.518 6.518 7 C -0.038 4.038 8 C -0.174 4.174 9 C -0.110 4.110 10 C -0.116 4.116 11 C -0.159 4.159 12 Cl -0.014 7.014 13 S 0.142 5.858 14 C 0.500 3.500 15 O -0.577 6.577 16 N -0.601 5.601 17 C 0.067 3.933 18 C 0.259 3.741 19 C -0.544 4.544 20 H 0.059 0.941 21 C 0.007 3.993 22 N -0.928 5.928 23 Si 0.969 3.031 24 H -0.259 1.259 25 H -0.281 1.281 26 H -0.276 1.276 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.162 0.838 31 H 0.134 0.866 32 H 0.173 0.827 33 H 0.170 0.830 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.029 0.971 38 H 0.000 1.000 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.072 10.844 26.298 28.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.024 3.976 3 H 0.136 0.864 4 O -0.258 6.258 5 C 0.303 3.697 6 O -0.407 6.407 7 C -0.077 4.077 8 C -0.292 4.292 9 C -0.140 4.140 10 C -0.148 4.148 11 C -0.303 4.303 12 Cl 0.014 6.986 13 S 0.406 5.594 14 C 0.287 3.713 15 O -0.457 6.457 16 N -0.333 5.333 17 C -0.075 4.075 18 C 0.138 3.862 19 C -0.583 4.583 20 H 0.077 0.923 21 C -0.192 4.192 22 N -0.567 5.567 23 Si 0.793 3.207 24 H -0.183 1.183 25 H -0.206 1.206 26 H -0.201 1.201 27 H 0.112 0.888 28 H 0.085 0.915 29 H 0.114 0.886 30 H 0.180 0.820 31 H 0.152 0.848 32 H 0.190 0.810 33 H 0.187 0.813 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.047 0.953 38 H 0.018 0.982 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.286 10.756 25.581 27.752 hybrid contribution -1.511 -0.298 -0.191 1.552 sum -1.798 10.458 25.390 27.519 Atomic orbital electron populations 1.22158 0.89864 1.04251 1.05251 1.22510 0.97427 0.96856 0.80835 0.86359 1.86636 1.76881 1.42303 1.19979 1.24236 0.74002 0.85881 0.85548 1.90665 1.48490 1.17162 1.84339 1.19914 1.06918 0.96180 0.84676 1.23971 0.97933 1.04322 1.02973 1.20274 1.01036 0.97891 0.94789 1.20455 0.94623 0.97871 1.01858 1.25403 0.99173 1.02741 1.03002 1.98370 1.82201 1.50452 1.67548 1.84567 1.14173 1.32798 1.27875 1.20668 0.79052 0.86423 0.85120 1.90658 1.47609 1.21037 1.86370 1.48069 1.64943 1.13773 1.06535 1.22143 1.00965 0.79657 1.04697 1.18861 0.95241 0.91263 0.80849 1.21666 0.95156 1.31946 1.09521 0.92273 1.25889 0.99468 0.96684 0.97200 1.70053 1.25417 1.41100 1.20177 0.85444 0.79049 0.78729 0.77462 1.18329 1.20584 1.20141 0.88838 0.91484 0.88640 0.82032 0.84796 0.80990 0.81260 0.91063 0.90155 0.89042 0.95319 0.98167 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 9.19 71.98 0.66 -3.31 16 2 C 0.08 2.54 2.14 29.85 0.06 2.61 16 3 H 0.12 3.28 6.31 -2.39 -0.02 3.27 16 4 O -0.34 -10.30 9.47 -45.23 -0.43 -10.73 16 5 C 0.46 10.98 7.92 71.24 0.56 11.54 16 6 O -0.52 -14.16 15.25 21.96 0.33 -13.83 16 7 C -0.04 -0.58 6.31 29.10 0.18 -0.39 16 8 C -0.17 -2.81 5.00 24.58 0.12 -2.68 16 9 C -0.11 -1.49 10.05 21.22 0.21 -1.28 16 10 C -0.12 -1.62 10.13 21.25 0.22 -1.41 16 11 C -0.16 -2.68 7.10 66.75 0.47 -2.20 16 12 Cl -0.01 -0.22 29.29 -2.72 -0.08 -0.30 16 13 S 0.14 2.53 23.33 -56.49 -1.32 1.22 16 14 C 0.50 21.30 6.95 87.66 0.61 21.91 16 15 O -0.58 -30.51 16.13 15.22 0.25 -30.27 16 16 N -0.60 -25.42 2.86 -851.13 -2.43 -27.85 16 17 C 0.07 1.98 9.79 127.77 1.25 3.23 16 18 C 0.26 13.83 5.18 85.64 0.44 14.28 16 19 C -0.54 -30.67 9.39 25.60 0.24 -30.43 16 20 H 0.06 3.24 7.81 -2.91 -0.02 3.21 16 21 C 0.01 0.38 5.46 84.65 0.46 0.85 16 22 N -0.93 -55.57 13.29 21.45 0.28 -55.28 16 23 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 24 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 27 H 0.09 2.22 6.32 -2.39 -0.02 2.20 16 28 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.16 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 34 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.08 2.40 8.03 -2.38 -0.02 2.38 16 36 H 0.09 2.11 4.92 -2.38 -0.01 2.10 16 37 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16 38 H 0.00 0.01 7.36 -2.39 -0.02 -0.01 16 39 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 Total: -1.00 -76.64 369.03 5.23 -71.41 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.09 Total: 6.95 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 5.50 Total: 12.71 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -2.15 Total: -83.13 kcal Atomic # 8 Polarization: -54.98 SS G_CDS: 0.15 Total: -54.83 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -1.32 Total: 1.22 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -0.08 Total: -0.30 kcal Total: -76.64 5.23 -71.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801484625.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.693 kcal (2) G-P(sol) polarization free energy of solvation -76.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds