Wall clock time and date at job start Wed Apr 1 2020 03:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99788 * 2 1 4 4 C 1.53004 * 109.46651 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47276 * 65.00407 * 4 3 2 6 6 C 1.36936 * 119.99869 * 65.92823 * 5 4 3 7 7 H 1.07997 * 119.99433 * 209.90432 * 6 5 4 8 8 C 1.38807 * 120.00175 * 29.62963 * 6 5 4 9 9 N 1.31618 * 119.99901 * 22.81233 * 8 6 5 10 10 Si 1.86802 * 120.00047 * 202.81896 * 8 6 5 11 11 H 1.48498 * 109.47206 * 59.99725 * 10 8 6 12 12 H 1.48496 * 109.47079 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.46769 * 299.99878 * 10 8 6 14 14 S 1.65596 * 119.99727 * 245.93244 * 5 4 3 15 15 O 1.42102 * 106.40618 * 23.53702 * 14 5 4 16 16 O 1.42102 * 106.40180 * 156.45713 * 14 5 4 17 17 C 1.76200 * 107.21545 * 269.99482 * 14 5 4 18 18 C 1.32580 * 120.00173 * 115.00417 * 17 14 5 19 19 C 1.47793 * 120.00551 * 179.97438 * 18 17 14 20 20 C 1.39545 * 120.14268 * 359.72379 * 19 18 17 21 21 C 1.37956 * 119.86591 * 179.74247 * 20 19 18 22 22 C 1.38377 * 120.16932 * 0.53507 * 21 20 19 23 23 C 1.38298 * 120.29764 * 359.73765 * 22 21 20 24 24 C 1.38116 * 120.13068 * 359.97438 * 23 22 21 25 25 Cl 1.73600 * 120.08631 * 179.97438 * 24 23 22 26 26 H 1.08997 * 109.47031 * 60.00024 * 1 2 3 27 27 H 1.09007 * 109.47143 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47370 * 299.99725 * 1 2 3 29 29 H 1.09000 * 109.47199 * 60.00691 * 3 2 1 30 30 H 1.08992 * 109.47410 * 299.99856 * 3 2 1 31 31 H 1.08998 * 109.47672 * 305.00008 * 4 3 2 32 32 H 1.08998 * 109.46915 * 184.99865 * 4 3 2 33 33 H 0.96998 * 119.99998 * 179.97438 * 9 8 6 34 34 H 1.07997 * 120.00482 * 295.00477 * 17 14 5 35 35 H 1.08006 * 119.99674 * 359.97438 * 18 17 14 36 36 H 1.08000 * 120.06749 * 359.97438 * 20 19 18 37 37 H 1.07996 * 119.91505 * 180.24697 * 21 20 19 38 38 H 1.07994 * 119.85186 * 179.76476 * 22 21 20 39 39 H 1.08005 * 119.93213 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2510 6 6 3.8007 1.2202 -2.4399 7 1 3.6550 0.6581 -3.3504 8 6 3.8039 2.6079 -2.4738 9 7 4.3997 3.2881 -1.5175 10 14 2.9624 3.5098 -3.8766 11 1 1.5210 3.1537 -3.9001 12 1 3.1079 4.9746 -3.6812 13 1 3.5902 3.1180 -5.1641 14 16 4.6882 -0.9312 -1.2278 15 8 4.2475 -1.5670 -0.0359 16 8 4.4966 -1.4868 -2.5216 17 6 6.4228 -0.6805 -1.0459 18 6 7.0420 -1.0997 0.0489 19 6 8.4970 -0.8900 0.2013 20 6 9.2231 -0.2563 -0.8078 21 6 10.5801 -0.0587 -0.6573 22 6 11.2240 -0.4971 0.4864 23 6 10.5121 -1.1310 1.4884 24 6 9.1521 -1.3299 1.3532 25 17 8.2597 -2.1264 2.6114 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6887 1.8464 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8508 0.5685 0.8427 32 1 3.9785 2.1765 0.0902 33 1 4.4023 4.2578 -1.5414 34 1 6.9817 -0.1855 -1.8262 35 1 6.4830 -1.5944 0.8295 36 1 8.7231 0.0822 -1.7033 37 1 11.1422 0.4352 -1.4360 38 1 12.2872 -0.3432 0.5972 39 1 11.0206 -1.4704 2.3788 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840948193.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:00 Heat of formation + Delta-G solvation = -71.757863 kcal Electronic energy + Delta-G solvation = -25950.744044 eV Core-core repulsion = 22012.458170 eV Total energy + Delta-G solvation = -3938.285875 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.35635 -37.41216 -36.43706 -35.79172 -35.44947 -34.43576 -34.04657 -31.67359 -30.81801 -29.36512 -28.79455 -25.78092 -24.66466 -23.75719 -22.53797 -21.47001 -20.09947 -18.32262 -17.44531 -17.00619 -16.59030 -16.06594 -15.69880 -15.40787 -15.10384 -14.85885 -14.54828 -14.39114 -14.13861 -13.84811 -13.66118 -13.54720 -13.21746 -12.32961 -12.24321 -12.04093 -11.78293 -11.58298 -11.55962 -11.21804 -11.14585 -11.13219 -10.92761 -10.81070 -10.74751 -10.65830 -10.52745 -10.43634 -10.21341 -9.98214 -9.75114 -9.37669 -8.90996 -8.89498 -8.30488 -7.92923 -6.55045 -4.11924 0.68596 1.15834 1.77852 2.12315 2.43874 3.09045 3.12978 3.19359 3.72217 3.98029 4.43040 4.59931 4.66328 4.71990 4.75553 4.88648 5.11640 5.24295 5.27317 5.52005 5.59638 5.71950 5.81525 5.87121 5.90705 6.02727 6.07393 6.12036 6.13911 6.16669 6.31833 6.35980 6.52522 6.69009 6.71403 6.95235 7.06998 7.20698 7.46546 7.92297 8.29537 8.68258 9.15503 10.37134 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.012458 B = 0.003949 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.034643 B = 7088.499232 C = 8339.860486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.379 6.379 3 C 0.062 3.938 4 C 0.119 3.881 5 N -0.802 5.802 6 C -0.251 4.251 7 H 0.111 0.889 8 C 0.036 3.964 9 N -0.837 5.837 10 Si 0.920 3.080 11 H -0.269 1.269 12 H -0.282 1.282 13 H -0.267 1.267 14 S 2.552 3.448 15 O -0.991 6.991 16 O -0.983 6.983 17 C -0.696 4.696 18 C -0.024 4.024 19 C -0.054 4.054 20 C -0.089 4.089 21 C -0.117 4.117 22 C -0.109 4.109 23 C -0.115 4.115 24 C -0.025 4.025 25 Cl -0.063 7.063 26 H 0.035 0.965 27 H 0.076 0.924 28 H 0.031 0.969 29 H 0.039 0.961 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.121 0.879 33 H 0.275 0.725 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.041 -0.760 4.879 8.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.016 4.016 4 C -0.008 4.008 5 N -0.626 5.626 6 C -0.396 4.396 7 H 0.128 0.872 8 C -0.176 4.176 9 N -0.476 5.476 10 Si 0.746 3.254 11 H -0.195 1.195 12 H -0.207 1.207 13 H -0.192 1.192 14 S 2.651 3.349 15 O -0.981 6.981 16 O -0.973 6.973 17 C -0.793 4.793 18 C -0.043 4.043 19 C -0.056 4.056 20 C -0.107 4.107 21 C -0.135 4.135 22 C -0.128 4.128 23 C -0.134 4.134 24 C -0.051 4.051 25 Cl -0.034 7.034 26 H 0.054 0.946 27 H 0.095 0.905 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.138 0.862 33 H 0.085 0.915 34 H 0.163 0.837 35 H 0.158 0.842 36 H 0.156 0.844 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.860 -1.842 5.099 8.744 hybrid contribution 0.263 1.192 -0.443 1.299 sum 7.123 -0.649 4.656 8.534 Atomic orbital electron populations 1.22630 0.83023 1.01751 0.99056 1.88034 1.17947 1.28604 1.95176 1.22868 0.95291 0.84120 0.99370 1.21594 0.91589 1.02433 0.85169 1.53514 1.59534 1.39045 1.10549 1.19740 1.42195 0.89693 0.87974 0.87188 1.25661 0.96420 0.97355 0.98195 1.69865 1.36486 1.08376 1.32895 0.86070 0.80324 0.77880 0.81136 1.19459 1.20676 1.19174 1.09606 0.74032 0.78237 0.73069 1.93389 1.80456 1.76195 1.48019 1.93383 1.85333 1.78423 1.40200 1.35386 1.32671 1.07625 1.03644 1.21802 0.91211 0.94303 0.97025 1.19279 0.94792 0.98532 0.92968 1.21476 0.93956 0.96701 0.98578 1.21215 0.94485 0.99769 0.98066 1.21158 1.00020 0.98104 0.93480 1.20970 0.91811 1.00383 1.00211 1.21130 0.92613 1.00440 0.90965 1.98374 1.75618 1.78317 1.51065 0.94615 0.90523 0.95085 0.94277 0.92348 0.91390 0.86194 0.91488 0.83745 0.84222 0.84355 0.85189 0.85151 0.84875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.64 16 2 O -0.38 -8.04 10.65 -35.23 -0.38 -8.41 16 3 C 0.06 1.25 6.05 37.16 0.22 1.48 16 4 C 0.12 2.61 5.50 -4.04 -0.02 2.59 16 5 N -0.80 -19.14 2.93 -59.91 -0.18 -19.32 16 6 C -0.25 -6.11 8.62 -15.06 -0.13 -6.24 16 7 H 0.11 2.74 7.33 -52.49 -0.38 2.36 16 8 C 0.04 0.82 4.57 -17.43 -0.08 0.74 16 9 N -0.84 -19.37 11.03 55.49 0.61 -18.76 16 10 Si 0.92 18.14 29.61 -169.99 -5.03 13.11 16 11 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 12 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 13 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 14 S 2.55 61.27 5.79 -107.50 -0.62 60.64 16 15 O -0.99 -24.90 15.53 -57.17 -0.89 -25.79 16 16 O -0.98 -26.14 16.87 -57.17 -0.96 -27.10 16 17 C -0.70 -14.61 9.75 28.83 0.28 -14.33 16 18 C -0.02 -0.46 9.02 -37.58 -0.34 -0.80 16 19 C -0.05 -0.91 5.87 -104.99 -0.62 -1.52 16 20 C -0.09 -1.34 9.40 -39.20 -0.37 -1.71 16 21 C -0.12 -1.40 10.03 -39.63 -0.40 -1.80 16 22 C -0.11 -1.17 10.04 -39.51 -0.40 -1.57 16 23 C -0.12 -1.37 9.82 -39.60 -0.39 -1.76 16 24 C -0.02 -0.37 6.35 -39.11 -0.25 -0.61 16 25 Cl -0.06 -0.91 27.42 -51.86 -1.42 -2.33 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 1.22 7.23 -51.93 -0.38 0.84 16 31 H 0.07 1.46 7.03 -51.93 -0.36 1.10 16 32 H 0.12 2.68 5.52 -51.93 -0.29 2.39 16 33 H 0.27 5.97 8.31 -40.82 -0.34 5.63 16 34 H 0.14 2.86 6.04 -52.49 -0.32 2.55 16 35 H 0.14 2.75 6.14 -52.48 -0.32 2.43 16 36 H 0.14 2.06 6.17 -52.49 -0.32 1.74 16 37 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 LS Contribution 357.68 15.07 5.39 5.39 Total: -1.00 -29.68 357.68 -9.32 -38.99 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -4.47 Total: 7.46 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: -1.37 Total: -23.89 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.44 Total: -38.08 kcal Atomic # 8 Polarization: -59.07 SS G_CDS: -2.23 Total: -61.30 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Atomic # 16 Polarization: 61.27 SS G_CDS: -0.62 Total: 60.64 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.42 Total: -2.33 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.68 -9.32 -38.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840948193.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.764 kcal (2) G-P(sol) polarization free energy of solvation -29.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds