Wall clock time and date at job start Wed Apr 1 2020 03:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99788 * 2 1 4 4 C 1.53004 * 109.46651 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47276 * 65.00407 * 4 3 2 6 6 C 1.36936 * 119.99869 * 65.92823 * 5 4 3 7 7 H 1.07997 * 119.99433 * 209.90432 * 6 5 4 8 8 C 1.38807 * 120.00175 * 29.62963 * 6 5 4 9 9 N 1.31618 * 119.99901 * 22.81233 * 8 6 5 10 10 Si 1.86802 * 120.00047 * 202.81896 * 8 6 5 11 11 H 1.48498 * 109.47206 * 59.99725 * 10 8 6 12 12 H 1.48496 * 109.47079 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.46769 * 299.99878 * 10 8 6 14 14 S 1.65596 * 119.99727 * 245.93244 * 5 4 3 15 15 O 1.42102 * 106.40618 * 23.53702 * 14 5 4 16 16 O 1.42102 * 106.40180 * 156.45713 * 14 5 4 17 17 C 1.76200 * 107.21545 * 269.99482 * 14 5 4 18 18 C 1.32580 * 120.00173 * 115.00417 * 17 14 5 19 19 C 1.47793 * 120.00551 * 179.97438 * 18 17 14 20 20 C 1.39545 * 120.14268 * 359.72379 * 19 18 17 21 21 C 1.37956 * 119.86591 * 179.74247 * 20 19 18 22 22 C 1.38377 * 120.16932 * 0.53507 * 21 20 19 23 23 C 1.38298 * 120.29764 * 359.73765 * 22 21 20 24 24 C 1.38116 * 120.13068 * 359.97438 * 23 22 21 25 25 Cl 1.73600 * 120.08631 * 179.97438 * 24 23 22 26 26 H 1.08997 * 109.47031 * 60.00024 * 1 2 3 27 27 H 1.09007 * 109.47143 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47370 * 299.99725 * 1 2 3 29 29 H 1.09000 * 109.47199 * 60.00691 * 3 2 1 30 30 H 1.08992 * 109.47410 * 299.99856 * 3 2 1 31 31 H 1.08998 * 109.47672 * 305.00008 * 4 3 2 32 32 H 1.08998 * 109.46915 * 184.99865 * 4 3 2 33 33 H 0.96998 * 119.99998 * 179.97438 * 9 8 6 34 34 H 1.07997 * 120.00482 * 295.00477 * 17 14 5 35 35 H 1.08006 * 119.99674 * 359.97438 * 18 17 14 36 36 H 1.08000 * 120.06749 * 359.97438 * 20 19 18 37 37 H 1.07996 * 119.91505 * 180.24697 * 21 20 19 38 38 H 1.07994 * 119.85186 * 179.76476 * 22 21 20 39 39 H 1.08005 * 119.93213 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2510 6 6 3.8007 1.2202 -2.4399 7 1 3.6550 0.6581 -3.3504 8 6 3.8039 2.6079 -2.4738 9 7 4.3997 3.2881 -1.5175 10 14 2.9624 3.5098 -3.8766 11 1 1.5210 3.1537 -3.9001 12 1 3.1079 4.9746 -3.6812 13 1 3.5902 3.1180 -5.1641 14 16 4.6882 -0.9312 -1.2278 15 8 4.2475 -1.5670 -0.0359 16 8 4.4966 -1.4868 -2.5216 17 6 6.4228 -0.6805 -1.0459 18 6 7.0420 -1.0997 0.0489 19 6 8.4970 -0.8900 0.2013 20 6 9.2231 -0.2563 -0.8078 21 6 10.5801 -0.0587 -0.6573 22 6 11.2240 -0.4971 0.4864 23 6 10.5121 -1.1310 1.4884 24 6 9.1521 -1.3299 1.3532 25 17 8.2597 -2.1264 2.6114 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6887 1.8464 0.8900 30 1 1.6886 1.8464 -0.8899 31 1 3.8508 0.5685 0.8427 32 1 3.9785 2.1765 0.0902 33 1 4.4023 4.2578 -1.5414 34 1 6.9817 -0.1855 -1.8262 35 1 6.4830 -1.5944 0.8295 36 1 8.7231 0.0822 -1.7033 37 1 11.1422 0.4352 -1.4360 38 1 12.2872 -0.3432 0.5972 39 1 11.0206 -1.4704 2.3788 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840948193.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:59 Heat of formation + Delta-G solvation = -90.524750 kcal Electronic energy + Delta-G solvation = -25951.557838 eV Core-core repulsion = 22012.458170 eV Total energy + Delta-G solvation = -3939.099668 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.43696 -39.01309 -37.74644 -37.55524 -37.15981 -36.38512 -35.44452 -33.46470 -31.84593 -30.61416 -30.44071 -27.24264 -26.37704 -24.99549 -23.60752 -23.15724 -21.48080 -20.11671 -18.89669 -18.69012 -18.19352 -17.63178 -17.24482 -16.76146 -16.55012 -16.28038 -16.14157 -15.92056 -15.66144 -14.98695 -14.89741 -14.81428 -14.76399 -14.02716 -13.69762 -13.55069 -13.27709 -12.97698 -12.86369 -12.70956 -12.69452 -12.66532 -12.64600 -12.44014 -12.29875 -12.12101 -12.01397 -11.95034 -11.79945 -11.63924 -11.45092 -11.12215 -10.41756 -9.94390 -9.74187 -9.52073 -8.31483 -5.97259 -0.57863 -0.01869 0.13762 1.01162 1.06813 1.50957 1.54071 1.62803 2.31180 2.62016 2.70033 2.90652 3.14634 3.21991 3.57021 3.62712 3.87382 3.99216 4.19403 4.23400 4.30195 4.34477 4.42496 4.55678 4.57192 4.62478 4.70324 4.80960 4.85792 4.87454 4.96090 5.06068 5.18767 5.31056 5.34362 5.40781 5.49192 5.70484 5.74514 6.42525 6.50913 6.85795 7.34398 8.61339 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.012458 B = 0.003949 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.034643 B = 7088.499232 C = 8339.860486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.066 3.934 4 C 0.116 3.884 5 N -0.809 5.809 6 C -0.278 4.278 7 H 0.094 0.906 8 C 0.015 3.985 9 N -0.850 5.850 10 Si 0.976 3.024 11 H -0.268 1.268 12 H -0.269 1.269 13 H -0.268 1.268 14 S 2.555 3.445 15 O -1.011 7.011 16 O -1.019 7.019 17 C -0.725 4.725 18 C 0.000 4.000 19 C -0.095 4.095 20 C -0.102 4.102 21 C -0.114 4.114 22 C -0.086 4.086 23 C -0.113 4.113 24 C -0.033 4.033 25 Cl -0.069 7.069 26 H 0.041 0.959 27 H 0.089 0.911 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.117 0.883 33 H 0.282 0.718 34 H 0.150 0.850 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.162 0.838 38 H 0.177 0.823 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.166 0.543 5.548 10.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.334 6.334 3 C -0.012 4.012 4 C -0.010 4.010 5 N -0.634 5.634 6 C -0.423 4.423 7 H 0.111 0.889 8 C -0.196 4.196 9 N -0.488 5.488 10 Si 0.799 3.201 11 H -0.193 1.193 12 H -0.194 1.194 13 H -0.193 1.193 14 S 2.658 3.342 15 O -1.001 7.001 16 O -1.010 7.010 17 C -0.827 4.827 18 C -0.020 4.020 19 C -0.097 4.097 20 C -0.120 4.120 21 C -0.132 4.132 22 C -0.104 4.104 23 C -0.131 4.131 24 C -0.060 4.060 25 Cl -0.040 7.040 26 H 0.060 0.940 27 H 0.107 0.893 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.134 0.866 33 H 0.092 0.908 34 H 0.168 0.832 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.180 0.820 38 H 0.194 0.806 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 8.943 -0.541 5.780 10.662 hybrid contribution -0.180 0.754 -0.531 0.940 sum 8.764 0.213 5.248 10.217 Atomic orbital electron populations 1.22883 0.80531 1.03168 1.00591 1.87978 1.20830 1.29123 1.95458 1.22800 0.93979 0.84164 1.00276 1.21671 0.93177 1.01793 0.84359 1.53422 1.60122 1.38823 1.10987 1.19727 1.44278 0.90458 0.87829 0.88863 1.26243 0.96131 0.97128 1.00133 1.69905 1.36273 1.08957 1.33690 0.85248 0.79251 0.77226 0.78419 1.19272 1.19371 1.19289 1.09184 0.74851 0.78196 0.71962 1.93339 1.81477 1.76946 1.48350 1.93315 1.86465 1.79403 1.41801 1.34823 1.30985 1.11463 1.05442 1.21965 0.93271 0.91348 0.95414 1.19223 0.93249 1.02050 0.95225 1.21600 0.95620 0.96905 0.97919 1.21614 0.93096 0.99070 0.99441 1.21732 1.02006 0.94916 0.91708 1.21406 0.90440 0.99606 1.01665 1.21348 0.93860 1.00523 0.90239 1.98370 1.76092 1.78440 1.51103 0.93985 0.89300 0.92529 0.91306 0.93252 0.91817 0.86587 0.90760 0.83188 0.85134 0.85348 0.82030 0.80588 0.81887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.77 11.01 113.37 1.25 2.02 16 2 O -0.41 -17.78 10.65 -148.98 -1.59 -19.37 16 3 C 0.07 2.69 6.05 71.98 0.44 3.13 16 4 C 0.12 5.27 5.50 86.38 0.47 5.75 16 5 N -0.81 -40.30 2.93 -343.44 -1.01 -41.31 16 6 C -0.28 -14.02 8.62 84.03 0.72 -13.30 16 7 H 0.09 4.91 7.33 -2.91 -0.02 4.89 16 8 C 0.01 0.67 4.57 84.86 0.39 1.06 16 9 N -0.85 -39.36 11.03 21.65 0.24 -39.12 16 10 Si 0.98 36.89 29.61 68.60 2.03 38.92 16 11 H -0.27 -10.02 7.11 99.48 0.71 -9.32 16 12 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 13 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 14 S 2.55 129.76 5.79 -56.49 -0.33 129.43 16 15 O -1.01 -53.49 15.53 -128.00 -1.99 -55.48 16 16 O -1.02 -57.49 16.87 -128.00 -2.16 -59.64 16 17 C -0.73 -32.19 9.75 66.67 0.65 -31.54 16 18 C 0.00 0.00 9.02 23.65 0.21 0.21 16 19 C -0.10 -3.21 5.87 -20.10 -0.12 -3.32 16 20 C -0.10 -2.99 9.40 22.52 0.21 -2.78 16 21 C -0.11 -2.34 10.03 22.24 0.22 -2.11 16 22 C -0.09 -1.42 10.04 22.32 0.22 -1.20 16 23 C -0.11 -2.28 9.82 22.26 0.22 -2.06 16 24 C -0.03 -0.93 6.35 22.58 0.14 -0.79 16 25 Cl -0.07 -1.97 27.42 -2.72 -0.07 -2.04 16 26 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.05 2.07 7.23 -2.39 -0.02 2.05 16 31 H 0.06 2.87 7.03 -2.39 -0.02 2.85 16 32 H 0.12 5.31 5.52 -2.39 -0.01 5.29 16 33 H 0.28 12.06 8.31 -92.71 -0.77 11.29 16 34 H 0.15 6.35 6.04 -2.91 -0.02 6.33 16 35 H 0.13 5.42 6.14 -2.91 -0.02 5.40 16 36 H 0.13 3.91 6.17 -2.91 -0.02 3.89 16 37 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 38 H 0.18 1.41 8.06 -2.91 -0.02 1.39 16 39 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -67.02 357.68 1.24 -65.78 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 1.08 Total: 27.79 kcal Atomic # 6 Polarization: -49.99 SS G_CDS: 5.04 Total: -44.95 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -0.77 Total: -80.43 kcal Atomic # 8 Polarization: -128.76 SS G_CDS: -5.73 Total: -134.49 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 2.03 Total: 38.92 kcal Atomic # 16 Polarization: 129.76 SS G_CDS: -0.33 Total: 129.43 kcal Atomic # 17 Polarization: -1.97 SS G_CDS: -0.07 Total: -2.04 kcal Total: -67.02 1.24 -65.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840948193.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.746 kcal (2) G-P(sol) polarization free energy of solvation -67.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds