Wall clock time and date at job start Wed Apr 1 2020 03:17:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.42902 * 113.99982 * 2 1
4 4 C 1.52994 * 109.47208 * 180.02562 * 3 2 1
5 5 N 1.46502 * 109.47210 * 64.09223 * 4 3 2
6 6 C 1.36944 * 119.99895 * 276.05874 * 5 4 3
7 7 H 1.07997 * 119.99782 * 141.65759 * 6 5 4
8 8 C 1.38811 * 119.99990 * 321.65830 * 6 5 4
9 9 N 1.31615 * 119.99760 * 162.58961 * 8 6 5
10 10 Si 1.86800 * 120.00302 * 342.59680 * 8 6 5
11 11 H 1.48499 * 109.47245 * 91.25255 * 10 8 6
12 12 H 1.48491 * 109.47193 * 211.25943 * 10 8 6
13 13 H 1.48507 * 109.46799 * 331.25865 * 10 8 6
14 14 S 1.65596 * 120.00198 * 96.05883 * 5 4 3
15 15 O 1.42096 * 106.40446 * 156.46007 * 14 5 4
16 16 O 1.42097 * 106.40208 * 23.53927 * 14 5 4
17 17 C 1.76199 * 107.21534 * 270.00210 * 14 5 4
18 18 C 1.32562 * 120.00185 * 118.23334 * 17 14 5
19 19 C 1.47815 * 119.99995 * 14.91038 * 18 17 14
20 20 C 1.39563 * 120.13619 * 46.18592 * 19 18 17
21 21 C 1.37957 * 119.88124 * 180.27446 * 20 19 18
22 22 C 1.38343 * 120.15962 * 359.74819 * 21 20 19
23 23 C 1.38434 * 120.27145 * 0.02562 * 22 21 20
24 24 Cl 1.73603 * 119.94286 * 179.97438 * 23 22 21
25 25 C 1.38119 * 120.11796 * 359.97438 * 23 22 21
26 26 H 1.08992 * 109.47275 * 180.02562 * 1 2 3
27 27 H 1.09002 * 109.46748 * 299.99925 * 1 2 3
28 28 H 1.09006 * 109.47163 * 59.99237 * 1 2 3
29 29 H 1.08997 * 109.47103 * 60.00211 * 3 2 1
30 30 H 1.08996 * 109.47086 * 300.00603 * 3 2 1
31 31 H 1.09004 * 109.47043 * 304.09141 * 4 3 2
32 32 H 1.09001 * 109.47567 * 184.09480 * 4 3 2
33 33 H 0.97008 * 119.99999 * 179.97438 * 9 8 6
34 34 H 1.08004 * 120.00236 * 298.22388 * 17 14 5
35 35 H 1.08005 * 120.00547 * 194.91546 * 18 17 14
36 36 H 1.08000 * 120.05611 * 0.02562 * 20 19 18
37 37 H 1.08005 * 119.91705 * 179.73079 * 21 20 19
38 38 H 1.08002 * 119.86505 * 179.97438 * 22 21 20
39 39 H 1.07993 * 120.08067 * 179.97438 * 25 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 6 3.5354 1.1847 -0.0006
5 7 3.9741 0.5448 -1.2434
6 6 3.9765 -0.8208 -1.3465
7 1 3.6857 -1.2928 -2.2733
8 6 4.3527 -1.5982 -0.2598
9 7 4.0390 -2.8760 -0.2248
10 14 5.3039 -0.8310 1.1530
11 1 4.3523 -0.3417 2.1825
12 1 6.2037 -1.8480 1.7539
13 1 6.1121 0.3068 0.6453
14 16 4.4671 1.4726 -2.5233
15 8 5.3149 0.6496 -3.3126
16 8 4.8803 2.7189 -1.9798
17 6 3.0425 1.8058 -3.5051
18 6 2.6360 3.0553 -3.6809
19 6 3.5356 4.1792 -3.3454
20 6 4.8679 4.1582 -3.7602
21 6 5.7043 5.2074 -3.4393
22 6 5.2240 6.2818 -2.7122
23 6 3.9024 6.3115 -2.3014
24 17 3.3089 7.6637 -1.3886
25 6 3.0551 5.2672 -2.6164
26 1 -0.3633 -1.0276 0.0005
27 1 -0.3633 0.5138 0.8900
28 1 -0.3634 0.5140 -0.8900
29 1 1.6887 1.8464 0.8900
30 1 1.6886 1.8464 -0.8899
31 1 3.8525 0.5816 0.8502
32 1 3.9787 2.1778 0.0727
33 1 4.3022 -3.4194 0.5344
34 1 2.5004 0.9921 -3.9640
35 1 1.6476 3.2522 -4.0691
36 1 5.2445 3.3203 -4.3280
37 1 6.7366 5.1897 -3.7564
38 1 5.8831 7.1004 -2.4632
39 1 2.0243 5.2909 -2.2952
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000840949449.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:17:12
Heat of formation + Delta-G solvation = -37.434278 kcal
Electronic energy + Delta-G solvation = -26985.058657 eV
Core-core repulsion = 23048.261164 eV
Total energy + Delta-G solvation = -3936.797492 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 345.063 amu
Computer time = 1.28 seconds
Orbital eigenvalues (eV)
-39.41802 -37.57993 -36.68708 -36.12484 -35.41921 -34.92343 -34.15392 -31.83831
-30.81438 -29.50757 -29.02571 -25.84917 -24.10939 -23.67663 -22.68695 -22.26294
-20.64971 -18.34956 -17.68665 -16.98606 -16.65821 -16.19605 -15.83711 -15.63155
-15.34729 -15.00131 -14.74030 -14.57314 -14.25342 -14.02841 -13.77148 -13.38866
-12.95105 -12.85954 -12.72368 -12.19104 -12.15117 -11.87615 -11.69910 -11.65687
-11.50214 -11.11045 -10.94165 -10.90383 -10.85561 -10.76789 -10.60985 -10.38351
-10.02271 -10.00326 -9.82104 -9.08520 -8.82523 -8.71857 -8.28494 -8.04254
-6.24678 -3.86268 0.70178 1.30696 1.35172 1.90265 2.12955 3.17176
3.33841 3.36541 3.70229 3.97845 4.31458 4.41625 4.48194 4.56029
4.80580 4.97239 5.05980 5.11507 5.21532 5.37207 5.51943 5.55095
5.57234 5.72339 5.74536 5.77946 5.82741 5.85736 5.98363 6.06707
6.09024 6.11861 6.25328 6.38836 6.39616 6.45028 6.80241 6.96155
7.80157 7.84376 8.35147 9.15839 9.28630 10.86270
Molecular weight = 345.06amu
Principal moments of inertia in cm(-1)
A = 0.013868 B = 0.004444 C = 0.004132
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2018.565296 B = 6298.652859 C = 6774.877802
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.344 6.344
3 C 0.050 3.950
4 C 0.108 3.892
5 N -0.859 5.859
6 C -0.277 4.277
7 H 0.103 0.897
8 C 0.078 3.922
9 N -0.863 5.863
10 Si 0.876 3.124
11 H -0.272 1.272
12 H -0.291 1.291
13 H -0.265 1.265
14 S 2.619 3.381
15 O -0.965 6.965
16 O -0.984 6.984
17 C -0.710 4.710
18 C 0.020 3.980
19 C -0.069 4.069
20 C -0.043 4.043
21 C -0.104 4.104
22 C -0.095 4.095
23 C -0.042 4.042
24 Cl -0.081 7.081
25 C -0.083 4.083
26 H 0.081 0.919
27 H 0.028 0.972
28 H 0.030 0.970
29 H 0.044 0.956
30 H 0.040 0.960
31 H 0.076 0.924
32 H 0.093 0.907
33 H 0.272 0.728
34 H 0.162 0.838
35 H 0.130 0.870
36 H 0.116 0.884
37 H 0.132 0.868
38 H 0.130 0.870
39 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.570 16.001 -3.104 16.928
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.261 6.261
3 C -0.029 4.029
4 C -0.019 4.019
5 N -0.691 5.691
6 C -0.413 4.413
7 H 0.121 0.879
8 C -0.131 4.131
9 N -0.501 5.501
10 Si 0.706 3.294
11 H -0.200 1.200
12 H -0.218 1.218
13 H -0.190 1.190
14 S 2.718 3.282
15 O -0.955 6.955
16 O -0.973 6.973
17 C -0.813 4.813
18 C 0.001 3.999
19 C -0.070 4.070
20 C -0.062 4.062
21 C -0.123 4.123
22 C -0.114 4.114
23 C -0.068 4.068
24 Cl -0.053 7.053
25 C -0.101 4.101
26 H 0.100 0.900
27 H 0.047 0.953
28 H 0.049 0.951
29 H 0.062 0.938
30 H 0.058 0.942
31 H 0.093 0.907
32 H 0.111 0.889
33 H 0.082 0.918
34 H 0.180 0.820
35 H 0.147 0.853
36 H 0.134 0.866
37 H 0.150 0.850
38 H 0.148 0.852
39 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges -3.658 16.158 -3.221 16.877
hybrid contribution -0.790 0.361 0.776 1.165
sum -4.448 16.519 -2.445 17.281
Atomic orbital electron populations
1.22684 0.83438 1.02190 0.98470 1.88333 1.17190 1.25767 1.94852
1.22993 0.95417 0.85754 0.98739 1.21704 0.91979 0.98345 0.89879
1.52760 1.77265 1.14966 1.24076 1.18540 1.43005 0.77115 1.02639
0.87911 1.25245 0.95202 0.94707 0.97982 1.69770 1.42920 1.06240
1.31170 0.87009 0.80391 0.79331 0.82699 1.19996 1.21844 1.18984
1.05184 0.74513 0.73096 0.75430 1.93491 1.63196 1.68108 1.70688
1.93581 1.80336 1.44713 1.78715 1.34284 1.28033 1.03657 1.15341
1.21602 0.96993 0.90815 0.90520 1.18954 0.93861 0.94498 0.99737
1.21127 0.91887 0.97119 0.96091 1.20816 0.99657 0.93254 0.98563
1.21010 0.93490 0.99159 0.97762 1.20624 0.94726 0.90841 1.00657
1.98348 1.88576 1.44907 1.73440 1.20847 0.99566 0.91700 0.98015
0.90014 0.95348 0.95095 0.93828 0.94227 0.90662 0.88905 0.91812
0.82001 0.85259 0.86582 0.84967 0.85208 0.85059
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 35.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.45 11.01 101.05 1.11 1.57 16
2 O -0.34 -7.03 9.85 -35.23 -0.35 -7.38 16
3 C 0.05 0.91 6.29 37.15 0.23 1.14 16
4 C 0.11 2.23 5.10 -4.04 -0.02 2.21 16
5 N -0.86 -19.84 2.49 -59.91 -0.15 -19.99 16
6 C -0.28 -7.40 8.54 -15.06 -0.13 -7.53 16
7 H 0.10 2.92 8.06 -52.49 -0.42 2.50 16
8 C 0.08 2.13 5.39 -17.43 -0.09 2.03 16
9 N -0.86 -24.66 13.97 55.49 0.78 -23.88 16
10 Si 0.88 21.25 24.90 -169.99 -4.23 17.02 16
11 H -0.27 -6.24 6.59 56.52 0.37 -5.86 16
12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
13 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16
14 S 2.62 55.10 4.75 -107.50 -0.51 54.59 16
15 O -0.97 -23.80 17.23 -57.17 -0.99 -24.79 16
16 O -0.98 -19.85 11.35 -57.17 -0.65 -20.50 16
17 C -0.71 -11.97 10.15 28.82 0.29 -11.68 16
18 C 0.02 0.29 9.73 -37.57 -0.37 -0.08 16
19 C -0.07 -1.02 3.99 -105.02 -0.42 -1.44 16
20 C -0.04 -0.65 6.32 -39.19 -0.25 -0.90 16
21 C -0.10 -1.38 10.02 -39.65 -0.40 -1.78 16
22 C -0.10 -1.19 9.82 -39.47 -0.39 -1.58 16
23 C -0.04 -0.54 6.31 -39.55 -0.25 -0.79 16
24 Cl -0.08 -0.94 28.95 -51.86 -1.50 -2.44 16
25 C -0.08 -1.10 9.57 -39.15 -0.37 -1.47 16
26 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16
27 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16
28 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16
29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16
30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16
31 H 0.08 1.68 2.61 -51.93 -0.14 1.55 16
32 H 0.09 1.72 6.90 -51.93 -0.36 1.36 16
33 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16
34 H 0.16 2.60 8.06 -52.48 -0.42 2.18 16
35 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16
36 H 0.12 1.75 7.33 -52.49 -0.38 1.36 16
37 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16
38 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16
39 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16
LS Contribution 350.72 15.07 5.29 5.29
Total: -1.00 -31.82 350.72 -8.05 -39.88
By element:
Atomic # 1 Polarization: 7.18 SS G_CDS: -4.69 Total: 2.49 kcal
Atomic # 6 Polarization: -19.25 SS G_CDS: -1.05 Total: -20.30 kcal
Atomic # 7 Polarization: -44.49 SS G_CDS: 0.63 Total: -43.87 kcal
Atomic # 8 Polarization: -50.68 SS G_CDS: -1.98 Total: -52.66 kcal
Atomic # 14 Polarization: 21.25 SS G_CDS: -4.23 Total: 17.02 kcal
Atomic # 16 Polarization: 55.10 SS G_CDS: -0.51 Total: 54.59 kcal
Atomic # 17 Polarization: -0.94 SS G_CDS: -1.50 Total: -2.44 kcal
Total LS contribution 5.29 Total: 5.29 kcal
Total: -31.82 -8.05 -39.88 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000840949449.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.443 kcal
(2) G-P(sol) polarization free energy of solvation -31.824 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.381 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.878 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.434 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.28 seconds