Wall clock time and date at job start Wed Apr 1 2020 03:17:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.42902 * 113.99982 * 2 1
4 4 C 1.52994 * 109.47208 * 180.02562 * 3 2 1
5 5 N 1.46502 * 109.47210 * 64.09223 * 4 3 2
6 6 C 1.36944 * 119.99895 * 276.05874 * 5 4 3
7 7 H 1.07997 * 119.99782 * 141.65759 * 6 5 4
8 8 C 1.38811 * 119.99990 * 321.65830 * 6 5 4
9 9 N 1.31615 * 119.99760 * 162.58961 * 8 6 5
10 10 Si 1.86800 * 120.00302 * 342.59680 * 8 6 5
11 11 H 1.48499 * 109.47245 * 91.25255 * 10 8 6
12 12 H 1.48491 * 109.47193 * 211.25943 * 10 8 6
13 13 H 1.48507 * 109.46799 * 331.25865 * 10 8 6
14 14 S 1.65596 * 120.00198 * 96.05883 * 5 4 3
15 15 O 1.42096 * 106.40446 * 156.46007 * 14 5 4
16 16 O 1.42097 * 106.40208 * 23.53927 * 14 5 4
17 17 C 1.76199 * 107.21534 * 270.00210 * 14 5 4
18 18 C 1.32562 * 120.00185 * 118.23334 * 17 14 5
19 19 C 1.47815 * 119.99995 * 14.91038 * 18 17 14
20 20 C 1.39563 * 120.13619 * 46.18592 * 19 18 17
21 21 C 1.37957 * 119.88124 * 180.27446 * 20 19 18
22 22 C 1.38343 * 120.15962 * 359.74819 * 21 20 19
23 23 C 1.38434 * 120.27145 * 0.02562 * 22 21 20
24 24 Cl 1.73603 * 119.94286 * 179.97438 * 23 22 21
25 25 C 1.38119 * 120.11796 * 359.97438 * 23 22 21
26 26 H 1.08992 * 109.47275 * 180.02562 * 1 2 3
27 27 H 1.09002 * 109.46748 * 299.99925 * 1 2 3
28 28 H 1.09006 * 109.47163 * 59.99237 * 1 2 3
29 29 H 1.08997 * 109.47103 * 60.00211 * 3 2 1
30 30 H 1.08996 * 109.47086 * 300.00603 * 3 2 1
31 31 H 1.09004 * 109.47043 * 304.09141 * 4 3 2
32 32 H 1.09001 * 109.47567 * 184.09480 * 4 3 2
33 33 H 0.97008 * 119.99999 * 179.97438 * 9 8 6
34 34 H 1.08004 * 120.00236 * 298.22388 * 17 14 5
35 35 H 1.08005 * 120.00547 * 194.91546 * 18 17 14
36 36 H 1.08000 * 120.05611 * 0.02562 * 20 19 18
37 37 H 1.08005 * 119.91705 * 179.73079 * 21 20 19
38 38 H 1.08002 * 119.86505 * 179.97438 * 22 21 20
39 39 H 1.07993 * 120.08067 * 179.97438 * 25 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 6 3.5354 1.1847 -0.0006
5 7 3.9741 0.5448 -1.2434
6 6 3.9765 -0.8208 -1.3465
7 1 3.6857 -1.2928 -2.2733
8 6 4.3527 -1.5982 -0.2598
9 7 4.0390 -2.8760 -0.2248
10 14 5.3039 -0.8310 1.1530
11 1 4.3523 -0.3417 2.1825
12 1 6.2037 -1.8480 1.7539
13 1 6.1121 0.3068 0.6453
14 16 4.4671 1.4726 -2.5233
15 8 5.3149 0.6496 -3.3126
16 8 4.8803 2.7189 -1.9798
17 6 3.0425 1.8058 -3.5051
18 6 2.6360 3.0553 -3.6809
19 6 3.5356 4.1792 -3.3454
20 6 4.8679 4.1582 -3.7602
21 6 5.7043 5.2074 -3.4393
22 6 5.2240 6.2818 -2.7122
23 6 3.9024 6.3115 -2.3014
24 17 3.3089 7.6637 -1.3886
25 6 3.0551 5.2672 -2.6164
26 1 -0.3633 -1.0276 0.0005
27 1 -0.3633 0.5138 0.8900
28 1 -0.3634 0.5140 -0.8900
29 1 1.6887 1.8464 0.8900
30 1 1.6886 1.8464 -0.8899
31 1 3.8525 0.5816 0.8502
32 1 3.9787 2.1778 0.0727
33 1 4.3022 -3.4194 0.5344
34 1 2.5004 0.9921 -3.9640
35 1 1.6476 3.2522 -4.0691
36 1 5.2445 3.3203 -4.3280
37 1 6.7366 5.1897 -3.7564
38 1 5.8831 7.1004 -2.4632
39 1 2.0243 5.2909 -2.2952
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000840949449.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:17:11
Heat of formation + Delta-G solvation = -59.421872 kcal
Electronic energy + Delta-G solvation = -26986.012110 eV
Core-core repulsion = 23048.261164 eV
Total energy + Delta-G solvation = -3937.750946 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 345.063 amu
Computer time = 1.12 seconds
Orbital eigenvalues (eV)
-40.47506 -39.06928 -38.02927 -37.44835 -37.09922 -36.63870 -35.35596 -33.78876
-31.82787 -30.63052 -30.57235 -27.19128 -25.98887 -24.84807 -23.88316 -23.59496
-21.87518 -20.08929 -19.11378 -18.68350 -18.23427 -17.53597 -17.18825 -16.99567
-16.64973 -16.27483 -16.13808 -16.05671 -15.68469 -15.37412 -14.78057 -14.75636
-14.55144 -14.41556 -14.04492 -13.84302 -13.66181 -13.26663 -13.07447 -12.86112
-12.77368 -12.71284 -12.55212 -12.41128 -12.26708 -12.12825 -11.93306 -11.83992
-11.72781 -11.59272 -11.23321 -10.73437 -10.34650 -9.94224 -9.78302 -9.38269
-8.27858 -5.92985 -0.54511 -0.13990 0.28996 0.76708 1.16435 1.24544
1.37432 1.44068 2.28832 2.36394 2.67186 2.88624 3.07333 3.18793
3.38673 3.67468 3.85508 3.95571 4.09071 4.13670 4.20898 4.33428
4.42863 4.45462 4.47512 4.61399 4.64063 4.66759 4.74063 4.87019
4.92335 4.93196 4.99362 5.22648 5.24399 5.29394 5.41262 5.79562
5.82605 6.26021 6.56232 7.17492 7.26202 8.87989
Molecular weight = 345.06amu
Principal moments of inertia in cm(-1)
A = 0.013868 B = 0.004444 C = 0.004132
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2018.565296 B = 6298.652859 C = 6774.877802
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.391 6.391
3 C 0.049 3.951
4 C 0.090 3.910
5 N -0.872 5.872
6 C -0.286 4.286
7 H 0.066 0.934
8 C 0.031 3.969
9 N -0.917 5.917
10 Si 0.920 3.080
11 H -0.252 1.252
12 H -0.296 1.296
13 H -0.263 1.263
14 S 2.649 3.351
15 O -1.010 7.010
16 O -0.972 6.972
17 C -0.740 4.740
18 C 0.068 3.932
19 C -0.095 4.095
20 C -0.070 4.070
21 C -0.112 4.112
22 C -0.093 4.093
23 C -0.051 4.051
24 Cl -0.067 7.067
25 C -0.080 4.080
26 H 0.077 0.923
27 H 0.053 0.947
28 H 0.048 0.952
29 H 0.076 0.924
30 H 0.058 0.942
31 H 0.059 0.941
32 H 0.115 0.885
33 H 0.270 0.730
34 H 0.167 0.833
35 H 0.177 0.823
36 H 0.106 0.894
37 H 0.152 0.848
38 H 0.154 0.846
39 H 0.156 0.844
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.828 20.207 -2.841 21.222
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.310 6.310
3 C -0.030 4.030
4 C -0.035 4.035
5 N -0.704 5.704
6 C -0.418 4.418
7 H 0.084 0.916
8 C -0.172 4.172
9 N -0.557 5.557
10 Si 0.748 3.252
11 H -0.178 1.178
12 H -0.223 1.223
13 H -0.188 1.188
14 S 2.749 3.251
15 O -1.001 7.001
16 O -0.962 6.962
17 C -0.849 4.849
18 C 0.048 3.952
19 C -0.097 4.097
20 C -0.089 4.089
21 C -0.130 4.130
22 C -0.111 4.111
23 C -0.077 4.077
24 Cl -0.038 7.038
25 C -0.098 4.098
26 H 0.095 0.905
27 H 0.072 0.928
28 H 0.066 0.934
29 H 0.094 0.906
30 H 0.077 0.923
31 H 0.077 0.923
32 H 0.132 0.868
33 H 0.080 0.920
34 H 0.185 0.815
35 H 0.194 0.806
36 H 0.124 0.876
37 H 0.170 0.830
38 H 0.172 0.828
39 H 0.174 0.826
Dipole moment (debyes) X Y Z Total
from point charges -4.904 20.294 -2.869 21.074
hybrid contribution -0.505 -0.522 0.506 0.886
sum -5.409 19.772 -2.362 20.634
Atomic orbital electron populations
1.22848 0.81123 1.02695 1.00483 1.88268 1.19942 1.27458 1.95285
1.23040 0.93353 0.85427 1.01160 1.21974 0.94502 0.98678 0.88386
1.52829 1.78579 1.13942 1.25035 1.18157 1.43501 0.78978 1.01120
0.91599 1.25725 0.96304 0.95062 1.00146 1.69888 1.45647 1.07819
1.32394 0.86282 0.79528 0.78451 0.80946 1.17807 1.22334 1.18764
1.03022 0.75299 0.72306 0.74466 1.93456 1.65996 1.69631 1.70993
1.93623 1.81070 1.42246 1.79243 1.33611 1.27218 1.05473 1.18638
1.22083 0.97944 0.89230 0.85953 1.19131 0.93890 0.95399 1.01247
1.21315 0.92719 0.97774 0.97114 1.21133 1.00568 0.92980 0.98369
1.21352 0.93852 0.99366 0.96545 1.20822 0.95015 0.91293 1.00606
1.98359 1.88409 1.44063 1.72999 1.21107 1.00779 0.90906 0.97026
0.90472 0.92849 0.93352 0.90581 0.92349 0.92334 0.86760 0.92037
0.81476 0.80634 0.87570 0.83034 0.82820 0.82639
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 30.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.72 11.01 113.37 1.25 1.97 16
2 O -0.39 -15.69 9.85 -148.98 -1.47 -17.16 16
3 C 0.05 1.64 6.29 71.98 0.45 2.09 16
4 C 0.09 3.61 5.10 86.38 0.44 4.05 16
5 N -0.87 -40.44 2.49 -343.45 -0.85 -41.29 16
6 C -0.29 -15.92 8.54 84.03 0.72 -15.20 16
7 H 0.07 4.04 8.06 -2.91 -0.02 4.02 16
8 C 0.03 1.76 5.39 84.86 0.46 2.21 16
9 N -0.92 -55.46 13.97 21.65 0.30 -55.16 16
10 Si 0.92 44.66 24.90 68.60 1.71 46.37 16
11 H -0.25 -11.18 6.59 99.48 0.66 -10.53 16
12 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16
13 H -0.26 -12.45 7.11 99.48 0.71 -11.74 16
14 S 2.65 110.29 4.75 -56.49 -0.27 110.02 16
15 O -1.01 -51.19 17.23 -128.00 -2.21 -53.40 16
16 O -0.97 -37.35 11.35 -128.00 -1.45 -38.81 16
17 C -0.74 -23.62 10.15 66.67 0.68 -22.94 16
18 C 0.07 1.64 9.73 23.66 0.23 1.87 16
19 C -0.10 -2.46 3.99 -20.12 -0.08 -2.54 16
20 C -0.07 -1.96 6.32 22.52 0.14 -1.81 16
21 C -0.11 -2.66 10.02 22.23 0.22 -2.44 16
22 C -0.09 -1.97 9.82 22.34 0.22 -1.75 16
23 C -0.05 -1.11 6.31 22.29 0.14 -0.97 16
24 Cl -0.07 -1.28 28.95 -2.72 -0.08 -1.36 16
25 C -0.08 -1.76 9.57 22.55 0.22 -1.55 16
26 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16
27 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16
28 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16
29 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16
30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16
31 H 0.06 2.56 2.61 -2.38 -0.01 2.56 16
32 H 0.11 3.96 6.90 -2.39 -0.02 3.94 16
33 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16
34 H 0.17 5.20 8.06 -2.91 -0.02 5.18 16
35 H 0.18 2.71 8.06 -2.91 -0.02 2.68 16
36 H 0.11 3.11 7.33 -2.91 -0.02 3.09 16
37 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16
38 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16
39 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16
Total: -1.00 -73.19 350.72 1.78 -71.41
By element:
Atomic # 1 Polarization: 15.37 SS G_CDS: 1.02 Total: 16.38 kcal
Atomic # 6 Polarization: -42.09 SS G_CDS: 5.08 Total: -37.00 kcal
Atomic # 7 Polarization: -95.90 SS G_CDS: -0.55 Total: -96.45 kcal
Atomic # 8 Polarization: -104.24 SS G_CDS: -5.13 Total: -109.36 kcal
Atomic # 14 Polarization: 44.66 SS G_CDS: 1.71 Total: 46.37 kcal
Atomic # 16 Polarization: 110.29 SS G_CDS: -0.27 Total: 110.02 kcal
Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.36 kcal
Total: -73.19 1.78 -71.41 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000840949449.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.984 kcal
(2) G-P(sol) polarization free energy of solvation -73.190 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.206 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.406 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.422 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.12 seconds