Wall clock time and date at job start Wed Apr 1 2020 02:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46798 * 2 1 4 4 C 1.50698 * 109.46804 * 239.99888 * 2 1 3 5 5 O 1.21282 * 119.99578 * 239.99658 * 4 2 1 6 6 N 1.34774 * 120.00505 * 60.00337 * 4 2 1 7 7 S 1.65600 * 120.00374 * 179.97438 * 6 4 2 8 8 O 1.42093 * 104.27815 * 181.07022 * 7 6 4 9 9 O 1.42105 * 104.27393 * 308.92528 * 7 6 4 10 10 C 1.81396 * 104.44546 * 64.99652 * 7 6 4 11 11 C 1.53011 * 109.46781 * 180.02562 * 10 7 6 12 12 C 1.50696 * 109.46949 * 180.02562 * 11 10 7 13 13 H 1.07997 * 120.00370 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99736 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00297 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00035 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46990 * 89.99930 * 16 14 12 18 18 H 1.48500 * 109.47365 * 209.99878 * 16 14 12 19 19 H 1.48501 * 109.47191 * 329.99937 * 16 14 12 20 20 C 1.50696 * 109.46861 * 119.99921 * 2 1 3 21 21 C 1.38246 * 119.98618 * 240.00049 * 20 2 1 22 22 C 1.38216 * 120.01497 * 180.02562 * 21 20 2 23 23 C 1.38357 * 119.98603 * 359.97165 * 22 21 20 24 24 Cl 1.73599 * 120.01134 * 180.02562 * 23 22 21 25 25 C 1.38347 * 119.97107 * 0.28224 * 23 22 21 26 26 C 1.38217 * 119.98914 * 359.48757 * 25 23 22 27 27 H 1.09001 * 109.46784 * 60.00408 * 1 2 3 28 28 H 1.09001 * 109.46798 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46759 * 300.00461 * 1 2 3 30 30 H 0.97006 * 119.99064 * 359.97438 * 6 4 2 31 31 H 1.08990 * 109.47630 * 300.00010 * 10 7 6 32 32 H 1.08998 * 109.47396 * 60.00503 * 10 7 6 33 33 H 1.09000 * 109.46930 * 300.00284 * 11 10 7 34 34 H 1.08998 * 109.46840 * 60.00046 * 11 10 7 35 35 H 0.96999 * 120.00383 * 180.02562 * 15 14 12 36 36 H 1.08003 * 119.99321 * 359.97438 * 21 20 2 37 37 H 1.08002 * 120.00776 * 179.97438 * 22 21 20 38 38 H 1.08000 * 120.00661 * 179.71600 * 25 23 22 39 39 H 1.07996 * 119.99353 * 180.23044 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 16 2.2593 -1.0304 -3.8067 8 8 1.7480 -0.2629 -4.8877 9 8 3.6588 -1.1534 -3.5930 10 6 1.4608 -2.6581 -3.7478 11 6 1.8974 -3.4844 -4.9593 12 6 1.2336 -4.8364 -4.9107 13 1 0.5673 -5.0820 -4.0970 14 6 1.4777 -5.7603 -5.9046 15 7 2.2894 -5.4615 -6.8952 16 14 0.6554 -7.4366 -5.8440 17 1 -0.6434 -7.3770 -6.5617 18 1 1.5339 -8.4426 -6.4931 19 1 0.4219 -7.8226 -4.4292 20 6 2.0323 -0.7104 1.2305 21 6 2.8271 -0.0383 2.1403 22 6 3.2885 -0.6894 3.2688 23 6 2.9544 -2.0140 3.4881 24 17 3.5330 -2.8322 4.9056 25 6 2.1633 -2.6876 2.5745 26 6 1.6986 -2.0340 1.4488 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.1489 0.5385 -2.5435 31 1 1.7529 -3.1732 -2.8328 32 1 0.3782 -2.5326 -3.7642 33 1 1.6056 -2.9694 -5.8745 34 1 2.9800 -3.6099 -4.9423 35 1 2.4608 -6.1114 -7.5947 36 1 3.0882 0.9956 1.9688 37 1 3.9097 -0.1643 3.9793 38 1 1.9060 -3.7229 2.7428 39 1 1.0780 -2.5587 0.7375 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845506830.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:15 Heat of formation + Delta-G solvation = -105.997683 kcal Electronic energy + Delta-G solvation = -25377.452811 eV Core-core repulsion = 21437.682186 eV Total energy + Delta-G solvation = -3939.770625 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.82455 -39.16403 -36.83190 -36.69303 -35.65770 -34.82759 -34.03147 -33.91694 -31.35326 -31.21021 -29.54936 -25.71088 -25.34349 -23.22790 -22.87076 -21.69368 -20.72359 -19.44386 -18.02278 -17.55416 -17.37329 -16.58825 -16.08400 -15.71656 -15.63727 -15.12907 -14.90946 -14.65413 -14.53875 -14.21051 -13.78751 -13.67470 -13.47269 -13.05960 -12.82273 -12.56946 -12.40231 -12.23188 -11.83971 -11.76699 -11.76071 -11.65300 -11.56087 -11.45350 -11.10248 -11.05891 -11.02764 -10.88502 -10.45230 -10.38180 -10.20855 -9.73732 -9.26771 -9.20797 -8.86323 -8.51634 -6.13869 -4.19557 0.43501 0.84205 1.05657 1.88353 2.00130 2.66646 3.25665 3.32084 3.33700 3.35162 3.93031 4.06485 4.15516 4.35867 4.43697 4.58576 4.60938 4.68558 4.74646 4.90392 5.04571 5.13496 5.21512 5.22237 5.37294 5.41755 5.55433 5.66917 5.67977 5.68344 5.90569 5.98418 6.20887 6.41629 6.48610 6.58877 7.25807 7.32556 7.38313 7.78875 8.14490 8.83331 9.45171 10.97239 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.010987 B = 0.003008 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.965175 B = 9305.891023 C =11069.074479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.072 4.072 3 H 0.116 0.884 4 C 0.535 3.465 5 O -0.477 6.477 6 N -1.058 6.058 7 S 2.564 3.436 8 O -0.954 6.954 9 O -0.937 6.937 10 C -0.575 4.575 11 C 0.030 3.970 12 C -0.520 4.520 13 H 0.062 0.938 14 C 0.058 3.942 15 N -0.890 5.890 16 Si 0.901 3.099 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.272 1.272 20 C -0.069 4.069 21 C -0.097 4.097 22 C -0.113 4.113 23 C -0.032 4.032 24 Cl -0.075 7.075 25 C -0.108 4.108 26 C -0.073 4.073 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.428 0.572 31 H 0.131 0.869 32 H 0.121 0.879 33 H 0.034 0.966 34 H 0.036 0.964 35 H 0.265 0.735 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.433 13.947 21.048 25.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.095 4.095 3 H 0.134 0.866 4 C 0.321 3.679 5 O -0.347 6.347 6 N -0.819 5.819 7 S 2.664 3.336 8 O -0.945 6.945 9 O -0.927 6.927 10 C -0.709 4.709 11 C -0.009 4.009 12 C -0.559 4.559 13 H 0.080 0.920 14 C -0.144 4.144 15 N -0.528 5.528 16 Si 0.728 3.272 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.070 4.070 21 C -0.115 4.115 22 C -0.132 4.132 23 C -0.058 4.058 24 Cl -0.046 7.046 25 C -0.127 4.127 26 C -0.091 4.091 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.263 0.737 31 H 0.149 0.851 32 H 0.140 0.860 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.142 13.494 20.500 24.743 hybrid contribution -0.964 -0.927 0.274 1.365 sum -4.106 12.567 20.773 24.623 Atomic orbital electron populations 1.21874 0.91040 1.03908 1.03627 1.20408 0.98439 1.00712 0.89952 0.86571 1.20452 0.78593 0.84283 0.84618 1.90946 1.33351 1.24315 1.86113 1.55440 1.62285 1.41678 1.22486 1.06764 0.76024 0.78354 0.72434 1.93591 1.81399 1.69229 1.50253 1.93604 1.28918 1.86744 1.83472 1.30334 1.11933 1.17017 1.11654 1.18989 0.98195 0.95190 0.88565 1.20965 1.28144 0.97661 1.09145 0.91969 1.25064 0.95137 0.99010 0.95237 1.69950 1.35393 1.35727 1.11735 0.86450 0.79219 0.83171 0.78334 1.20454 1.20965 1.19711 1.19389 0.98263 0.94512 0.94851 1.20955 0.96868 1.00156 0.93523 1.20973 1.00820 0.92884 0.98512 1.20968 1.00606 0.93658 0.90613 1.98372 1.87795 1.79173 1.39233 1.21057 0.97524 1.00529 0.93591 1.20960 0.98584 0.93608 0.95992 0.91061 0.91153 0.90475 0.73687 0.85097 0.86030 0.94779 0.94592 0.92480 0.84968 0.84889 0.84710 0.84916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 8.90 37.16 0.33 -0.48 16 2 C -0.07 -0.57 2.90 -92.92 -0.27 -0.84 16 3 H 0.12 0.60 7.88 -51.93 -0.41 0.19 16 4 C 0.54 6.55 6.76 -10.99 -0.07 6.47 16 5 O -0.48 -7.90 13.21 -11.57 -0.15 -8.05 16 6 N -1.06 -12.35 5.50 31.22 0.17 -12.17 16 7 S 2.56 45.12 5.11 -107.50 -0.55 44.57 16 8 O -0.95 -18.37 18.08 -57.54 -1.04 -19.41 16 9 O -0.94 -20.24 17.04 -64.79 -1.10 -21.35 16 10 C -0.57 -11.06 5.82 37.16 0.22 -10.84 16 11 C 0.03 0.76 4.98 -27.88 -0.14 0.62 16 12 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 13 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 16 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 C -0.07 -0.66 4.40 -104.62 -0.46 -1.12 16 21 C -0.10 -0.81 9.67 -39.59 -0.38 -1.19 16 22 C -0.11 -1.00 9.83 -39.55 -0.39 -1.39 16 23 C -0.03 -0.32 6.32 -39.50 -0.25 -0.57 16 24 Cl -0.07 -0.71 28.96 -51.86 -1.50 -2.22 16 25 C -0.11 -1.11 9.83 -39.55 -0.39 -1.50 16 26 C -0.07 -0.76 7.93 -39.59 -0.31 -1.08 16 27 H 0.07 0.28 7.56 -51.93 -0.39 -0.11 16 28 H 0.07 0.43 7.39 -51.93 -0.38 0.04 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.43 3.12 8.21 -34.48 -0.28 2.84 16 31 H 0.13 2.46 7.19 -51.93 -0.37 2.09 16 32 H 0.12 1.98 8.14 -51.92 -0.42 1.56 16 33 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.13 0.76 7.95 -52.48 -0.42 0.34 16 37 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.13 1.33 7.52 -52.49 -0.39 0.93 16 LS Contribution 362.37 15.07 5.46 5.46 Total: -1.00 -37.17 362.37 -10.26 -47.43 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -4.73 Total: 0.30 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: -2.53 Total: -25.04 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.91 Total: -37.90 kcal Atomic # 8 Polarization: -46.51 SS G_CDS: -2.30 Total: -48.81 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 45.12 SS G_CDS: -0.55 Total: 44.57 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.17 -10.26 -47.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845506830.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.570 kcal (2) G-P(sol) polarization free energy of solvation -37.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds