Wall clock time and date at job start Wed Apr 1 2020 02:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46798 * 2 1 4 4 C 1.50698 * 109.46804 * 239.99888 * 2 1 3 5 5 O 1.21282 * 119.99578 * 239.99658 * 4 2 1 6 6 N 1.34774 * 120.00505 * 60.00337 * 4 2 1 7 7 S 1.65600 * 120.00374 * 179.97438 * 6 4 2 8 8 O 1.42093 * 104.27815 * 181.07022 * 7 6 4 9 9 O 1.42105 * 104.27393 * 308.92528 * 7 6 4 10 10 C 1.81396 * 104.44546 * 64.99652 * 7 6 4 11 11 C 1.53011 * 109.46781 * 180.02562 * 10 7 6 12 12 C 1.50696 * 109.46949 * 180.02562 * 11 10 7 13 13 H 1.07997 * 120.00370 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99736 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00297 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00035 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46990 * 89.99930 * 16 14 12 18 18 H 1.48500 * 109.47365 * 209.99878 * 16 14 12 19 19 H 1.48501 * 109.47191 * 329.99937 * 16 14 12 20 20 C 1.50696 * 109.46861 * 119.99921 * 2 1 3 21 21 C 1.38246 * 119.98618 * 240.00049 * 20 2 1 22 22 C 1.38216 * 120.01497 * 180.02562 * 21 20 2 23 23 C 1.38357 * 119.98603 * 359.97165 * 22 21 20 24 24 Cl 1.73599 * 120.01134 * 180.02562 * 23 22 21 25 25 C 1.38347 * 119.97107 * 0.28224 * 23 22 21 26 26 C 1.38217 * 119.98914 * 359.48757 * 25 23 22 27 27 H 1.09001 * 109.46784 * 60.00408 * 1 2 3 28 28 H 1.09001 * 109.46798 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46759 * 300.00461 * 1 2 3 30 30 H 0.97006 * 119.99064 * 359.97438 * 6 4 2 31 31 H 1.08990 * 109.47630 * 300.00010 * 10 7 6 32 32 H 1.08998 * 109.47396 * 60.00503 * 10 7 6 33 33 H 1.09000 * 109.46930 * 300.00284 * 11 10 7 34 34 H 1.08998 * 109.46840 * 60.00046 * 11 10 7 35 35 H 0.96999 * 120.00383 * 180.02562 * 15 14 12 36 36 H 1.08003 * 119.99321 * 359.97438 * 21 20 2 37 37 H 1.08002 * 120.00776 * 179.97438 * 22 21 20 38 38 H 1.08000 * 120.00661 * 179.71600 * 25 23 22 39 39 H 1.07996 * 119.99353 * 180.23044 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 16 2.2593 -1.0304 -3.8067 8 8 1.7480 -0.2629 -4.8877 9 8 3.6588 -1.1534 -3.5930 10 6 1.4608 -2.6581 -3.7478 11 6 1.8974 -3.4844 -4.9593 12 6 1.2336 -4.8364 -4.9107 13 1 0.5673 -5.0820 -4.0970 14 6 1.4777 -5.7603 -5.9046 15 7 2.2894 -5.4615 -6.8952 16 14 0.6554 -7.4366 -5.8440 17 1 -0.6434 -7.3770 -6.5617 18 1 1.5339 -8.4426 -6.4931 19 1 0.4219 -7.8226 -4.4292 20 6 2.0323 -0.7104 1.2305 21 6 2.8271 -0.0383 2.1403 22 6 3.2885 -0.6894 3.2688 23 6 2.9544 -2.0140 3.4881 24 17 3.5330 -2.8322 4.9056 25 6 2.1633 -2.6876 2.5745 26 6 1.6986 -2.0340 1.4488 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.1489 0.5385 -2.5435 31 1 1.7529 -3.1732 -2.8328 32 1 0.3782 -2.5326 -3.7642 33 1 1.6056 -2.9694 -5.8745 34 1 2.9800 -3.6099 -4.9423 35 1 2.4608 -6.1114 -7.5947 36 1 3.0882 0.9956 1.9688 37 1 3.9097 -0.1643 3.9793 38 1 1.9060 -3.7229 2.7428 39 1 1.0780 -2.5587 0.7375 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845506830.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:15 Heat of formation + Delta-G solvation = -132.088860 kcal Electronic energy + Delta-G solvation = -25378.584209 eV Core-core repulsion = 21437.682186 eV Total energy + Delta-G solvation = -3940.902023 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.73411 -39.96889 -38.30087 -37.49726 -37.22613 -35.99149 -35.78726 -34.80267 -33.18408 -32.03066 -30.18056 -27.66573 -26.05233 -24.04156 -23.76573 -23.45879 -21.56110 -20.74449 -19.37172 -18.74934 -18.36503 -18.06041 -17.33424 -16.85482 -16.61506 -16.51880 -16.43069 -15.96508 -15.45094 -15.20928 -14.86949 -14.50249 -14.47708 -14.35278 -13.84249 -13.76950 -13.65945 -13.37634 -13.29578 -13.21939 -12.95904 -12.86573 -12.80897 -12.49257 -12.31748 -12.27692 -12.20023 -12.06117 -11.97920 -11.75113 -11.74406 -11.24012 -11.03995 -10.66277 -9.96072 -9.57460 -8.28219 -6.42274 -1.00787 0.11580 0.36693 1.01581 1.15839 1.39540 1.41831 1.44221 1.52918 2.36037 2.55736 2.62023 3.05032 3.06527 3.27437 3.47589 3.78793 3.89970 3.96616 4.04422 4.06318 4.11994 4.26647 4.41205 4.52186 4.68664 4.72322 4.88526 4.92972 5.01956 5.21497 5.21918 5.23628 5.27454 5.34356 5.52646 5.65430 5.69123 5.85248 6.02842 6.44379 6.70546 7.27833 8.84224 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.010987 B = 0.003008 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.965175 B = 9305.891023 C =11069.074479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.061 4.061 3 H 0.155 0.845 4 C 0.533 3.467 5 O -0.523 6.523 6 N -1.034 6.034 7 S 2.599 3.401 8 O -0.971 6.971 9 O -0.980 6.980 10 C -0.578 4.578 11 C 0.023 3.977 12 C -0.540 4.540 13 H 0.075 0.925 14 C -0.003 4.003 15 N -0.933 5.933 16 Si 0.974 3.026 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.260 1.260 20 C -0.080 4.080 21 C -0.094 4.094 22 C -0.118 4.118 23 C -0.045 4.045 24 Cl -0.077 7.077 25 C -0.125 4.125 26 C -0.090 4.090 27 H 0.092 0.908 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.451 0.549 31 H 0.133 0.867 32 H 0.153 0.847 33 H 0.015 0.985 34 H 0.003 0.997 35 H 0.268 0.732 36 H 0.165 0.835 37 H 0.152 0.848 38 H 0.135 0.865 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.106 15.534 22.665 28.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.083 4.083 3 H 0.173 0.827 4 C 0.321 3.679 5 O -0.395 6.395 6 N -0.801 5.801 7 S 2.698 3.302 8 O -0.961 6.961 9 O -0.970 6.970 10 C -0.711 4.711 11 C -0.016 4.016 12 C -0.579 4.579 13 H 0.093 0.907 14 C -0.201 4.201 15 N -0.572 5.572 16 Si 0.798 3.202 17 H -0.191 1.191 18 H -0.208 1.208 19 H -0.184 1.184 20 C -0.081 4.081 21 C -0.112 4.112 22 C -0.136 4.136 23 C -0.072 4.072 24 Cl -0.048 7.048 25 C -0.144 4.144 26 C -0.108 4.108 27 H 0.111 0.889 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.292 0.708 31 H 0.152 0.848 32 H 0.171 0.829 33 H 0.033 0.967 34 H 0.021 0.979 35 H 0.077 0.923 36 H 0.183 0.817 37 H 0.169 0.831 38 H 0.153 0.847 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.852 15.100 22.110 27.211 hybrid contribution -0.431 -1.342 -0.155 1.418 sum -5.284 13.758 21.955 26.443 Atomic orbital electron populations 1.21976 0.88910 1.04021 1.05716 1.20550 0.99985 1.01500 0.86309 0.82720 1.21404 0.77405 0.83702 0.85419 1.90944 1.35537 1.26594 1.86466 1.54830 1.62464 1.42028 1.20811 1.05381 0.74700 0.77311 0.72854 1.93563 1.81410 1.69051 1.52094 1.93551 1.31757 1.87146 1.84552 1.30231 1.14219 1.18005 1.08664 1.18816 0.96172 0.95935 0.90684 1.21477 1.28247 0.98741 1.09443 0.90722 1.26110 0.95720 1.03528 0.94773 1.70092 1.37093 1.37354 1.12707 0.85307 0.78319 0.77657 0.78949 1.19139 1.20846 1.18443 1.19645 0.98447 0.94276 0.95691 1.21342 0.95623 1.01561 0.92696 1.21287 1.00729 0.92453 0.99159 1.21143 1.01008 0.94391 0.90658 1.98365 1.87810 1.79367 1.39295 1.21171 0.98245 1.00872 0.94114 1.21074 0.99141 0.94549 0.96026 0.88911 0.92138 0.88495 0.70780 0.84827 0.82875 0.96684 0.97904 0.92307 0.81728 0.83060 0.84704 0.85389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.90 71.98 0.64 -0.42 16 2 C -0.06 -0.74 2.90 -12.29 -0.04 -0.78 16 3 H 0.16 0.76 7.88 -2.39 -0.02 0.74 16 4 C 0.53 11.91 6.76 87.66 0.59 12.50 16 5 O -0.52 -17.04 13.21 13.34 0.18 -16.87 16 6 N -1.03 -21.71 5.50 -173.54 -0.95 -22.66 16 7 S 2.60 90.54 5.11 -56.49 -0.29 90.25 16 8 O -0.97 -36.69 18.08 -127.65 -2.31 -39.00 16 9 O -0.98 -43.03 17.04 -120.72 -2.06 -45.09 16 10 C -0.58 -22.32 5.82 71.99 0.42 -21.90 16 11 C 0.02 1.21 4.98 29.85 0.15 1.36 16 12 C -0.54 -30.30 9.11 25.60 0.23 -30.07 16 13 H 0.07 3.88 7.74 -2.91 -0.02 3.85 16 14 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 15 N -0.93 -57.07 13.29 21.45 0.28 -56.79 16 16 Si 0.97 43.63 29.54 68.60 2.03 45.65 16 17 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 19 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 20 C -0.08 -1.32 4.40 -19.86 -0.09 -1.41 16 21 C -0.09 -1.30 9.67 22.27 0.22 -1.08 16 22 C -0.12 -1.85 9.83 22.29 0.22 -1.63 16 23 C -0.05 -0.88 6.32 22.32 0.14 -0.74 16 24 Cl -0.08 -1.45 28.96 -2.72 -0.08 -1.52 16 25 C -0.13 -2.58 9.83 22.29 0.22 -2.36 16 26 C -0.09 -1.81 7.93 22.27 0.18 -1.64 16 27 H 0.09 0.28 7.56 -2.39 -0.02 0.26 16 28 H 0.06 0.58 7.39 -2.39 -0.02 0.56 16 29 H 0.10 0.38 8.14 -2.39 -0.02 0.37 16 30 H 0.45 4.93 8.21 -96.73 -0.79 4.13 16 31 H 0.13 5.09 7.19 -2.40 -0.02 5.07 16 32 H 0.15 4.79 8.14 -2.39 -0.02 4.77 16 33 H 0.01 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 36 H 0.17 1.12 7.95 -2.91 -0.02 1.10 16 37 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 38 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 39 H 0.13 2.58 7.52 -2.91 -0.02 2.56 16 Total: -1.00 -83.95 362.37 0.44 -83.51 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 0.29 Total: 10.38 kcal Atomic # 6 Polarization: -51.21 SS G_CDS: 3.34 Total: -47.87 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -0.67 Total: -79.45 kcal Atomic # 8 Polarization: -96.77 SS G_CDS: -4.19 Total: -100.95 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: 90.54 SS G_CDS: -0.29 Total: 90.25 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.08 Total: -1.52 kcal Total: -83.95 0.44 -83.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845506830.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.579 kcal (2) G-P(sol) polarization free energy of solvation -83.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds