Wall clock time and date at job start Wed Apr 1 2020 02:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34226 * 116.99538 * 2 1 4 4 O 1.20829 * 120.00151 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99758 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47022 * 180.02562 * 5 3 2 7 7 N 1.46503 * 109.46806 * 180.02562 * 6 5 3 8 8 C 1.37103 * 119.99662 * 265.58273 * 7 6 5 9 9 H 1.08006 * 119.99925 * 54.16773 * 8 7 6 10 10 C 1.38944 * 120.00041 * 234.16099 * 8 7 6 11 11 N 1.31411 * 120.00359 * 19.11248 * 10 8 7 12 12 Si 1.86804 * 119.99920 * 199.10663 * 10 8 7 13 13 H 1.48506 * 109.46809 * 90.00408 * 12 10 8 14 14 H 1.48501 * 109.47213 * 210.00245 * 12 10 8 15 15 H 1.48499 * 109.47218 * 330.00375 * 12 10 8 16 16 C 1.34776 * 120.00180 * 85.59019 * 7 6 5 17 17 O 1.21287 * 119.99897 * 5.10822 * 16 7 6 18 18 C 1.50700 * 119.99784 * 185.11337 * 16 7 6 19 19 H 1.08998 * 109.47371 * 306.32788 * 18 16 7 20 20 C 1.53002 * 109.47251 * 66.32820 * 18 16 7 21 21 C 1.50698 * 109.46814 * 186.32600 * 18 16 7 22 22 C 1.33352 * 125.18396 * 119.98782 * 21 18 16 23 23 C 1.38476 * 114.92770 * 179.77234 * 22 21 18 24 24 C 1.33503 * 114.88425 * 0.49362 * 23 22 21 25 25 Cl 1.73592 * 125.21135 * 179.79954 * 24 23 22 26 26 S 1.75877 * 125.19170 * 300.02626 * 21 18 16 27 27 H 1.08992 * 109.47285 * 59.99793 * 1 2 3 28 28 H 1.08998 * 109.46600 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47067 * 299.99217 * 1 2 3 30 30 H 1.08999 * 109.46753 * 60.00031 * 5 3 2 31 31 H 1.09001 * 109.47222 * 300.00371 * 5 3 2 32 32 H 1.09001 * 109.47137 * 60.00109 * 6 5 3 33 33 H 1.08995 * 109.47047 * 299.99645 * 6 5 3 34 34 H 0.96999 * 120.00449 * 179.97438 * 11 10 8 35 35 H 1.09006 * 109.46739 * 64.10232 * 20 18 16 36 36 H 1.08993 * 109.47521 * 184.09897 * 20 18 16 37 37 H 1.09001 * 109.47049 * 304.10391 * 20 18 16 38 38 H 1.08000 * 122.54052 * 0.05273 * 22 21 18 39 39 H 1.07994 * 122.56003 * 180.30853 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7422 0.0002 7 7 5.4631 2.8188 -0.0010 8 6 6.1438 2.9451 1.1824 9 1 5.9771 2.2358 1.9796 10 6 7.0482 3.9855 1.3560 11 7 6.9905 5.0431 0.5781 12 14 8.3463 3.8810 2.6953 13 1 9.5695 3.2392 2.1500 14 1 8.6755 5.2479 3.1733 15 1 7.8257 3.0728 3.8271 16 6 6.1398 2.7654 -1.1653 17 8 5.5362 2.7473 -2.2172 18 6 7.6463 2.7280 -1.1602 19 1 8.0286 3.5654 -0.5765 20 6 8.1218 1.4135 -0.5381 21 6 8.1560 2.8276 -2.5749 22 6 8.9515 3.7920 -3.0389 23 6 9.2952 3.6726 -4.3750 24 6 8.7694 2.6154 -4.9980 25 17 9.0184 2.2117 -6.6679 26 16 7.7918 1.6900 -3.8659 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 3.9557 0.7810 -0.8908 31 1 3.9565 0.7806 0.8891 32 1 3.6107 3.2357 0.8907 33 1 3.6100 3.2368 -0.8893 34 1 7.6216 5.7696 0.6996 35 1 7.8010 0.5793 -1.1621 36 1 9.2094 1.4173 -0.4677 37 1 7.6935 1.3074 0.4586 38 1 9.3047 4.6024 -2.4185 39 1 9.9371 4.3822 -4.8757 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871342773.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:03 Heat of formation + Delta-G solvation = -91.376567 kcal Electronic energy + Delta-G solvation = -25934.787666 eV Core-core repulsion = 21995.651061 eV Total energy + Delta-G solvation = -3939.136605 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.21976 -39.07321 -37.48919 -36.40844 -36.23572 -34.87052 -33.49307 -32.05298 -30.46417 -27.96661 -27.51410 -25.16174 -24.41417 -23.64228 -21.98171 -20.43141 -19.55882 -18.99490 -17.64481 -17.25572 -16.43243 -16.35539 -16.27566 -15.45644 -15.20326 -14.82729 -14.46684 -14.00948 -13.77513 -13.50017 -13.17805 -13.01329 -12.89010 -12.68313 -12.40239 -12.34364 -12.14837 -11.90968 -11.59264 -11.43452 -11.28525 -11.22451 -11.08702 -10.95265 -10.69221 -10.66302 -10.57260 -10.50888 -10.29805 -10.20931 -10.13146 -9.00671 -8.51648 -8.06283 -7.90982 -7.51245 -6.57662 -4.41523 1.28292 1.55675 2.36882 2.49283 2.61569 2.90240 3.01204 3.06667 3.12157 3.12938 3.87205 4.00622 4.65039 4.73691 5.13050 5.14222 5.20280 5.32358 5.50536 5.57122 5.61691 5.69598 5.77388 5.94863 5.99168 6.04888 6.19725 6.36085 6.43820 6.54328 6.59117 6.61481 6.76604 6.83749 6.85589 6.98653 7.26136 7.76376 8.00584 8.45697 8.75407 9.37905 9.82164 10.46415 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.008699 B = 0.004269 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3217.874541 B = 6557.115632 C = 9126.508017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.467 3.533 4 O -0.508 6.508 5 C -0.125 4.125 6 C 0.129 3.871 7 N -0.450 5.450 8 C -0.348 4.348 9 H 0.086 0.914 10 C 0.053 3.947 11 N -0.849 5.849 12 Si 0.901 3.099 13 H -0.268 1.268 14 H -0.281 1.281 15 H -0.265 1.265 16 C 0.522 3.478 17 O -0.592 6.592 18 C -0.040 4.040 19 H 0.135 0.865 20 C -0.138 4.138 21 C -0.112 4.112 22 C -0.154 4.154 23 C -0.112 4.112 24 C -0.177 4.177 25 Cl -0.037 7.037 26 S 0.180 5.820 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.274 0.726 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.090 0.910 38 H 0.143 0.857 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.137 -7.764 -2.710 8.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.282 6.282 3 C 0.310 3.690 4 O -0.396 6.396 5 C -0.164 4.164 6 C 0.005 3.995 7 N -0.170 5.170 8 C -0.476 4.476 9 H 0.103 0.897 10 C -0.155 4.155 11 N -0.483 5.483 12 Si 0.726 3.274 13 H -0.193 1.193 14 H -0.207 1.207 15 H -0.189 1.189 16 C 0.311 3.689 17 O -0.476 6.476 18 C -0.064 4.064 19 H 0.152 0.848 20 C -0.196 4.196 21 C -0.231 4.231 22 C -0.183 4.183 23 C -0.146 4.146 24 C -0.321 4.321 25 Cl -0.008 7.008 26 S 0.444 5.556 27 H 0.079 0.921 28 H 0.115 0.885 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.109 0.891 38 H 0.160 0.840 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.172 -8.639 -3.524 9.332 hybrid contribution 1.273 1.688 0.618 2.203 sum 1.101 -6.951 -2.907 7.614 Atomic orbital electron populations 1.23190 0.77127 1.03185 1.02390 1.86538 1.22918 1.34219 1.84502 1.24037 0.92366 0.80950 0.71672 1.90652 1.67334 1.36294 1.45274 1.21890 0.85988 1.02870 1.05611 1.21120 0.84142 0.91216 1.03062 1.43141 1.02493 1.65594 1.05807 1.19232 1.22644 1.11571 0.94148 0.89650 1.25638 0.99226 0.93553 0.97113 1.70030 1.34460 1.04965 1.38881 0.86333 0.81418 0.78231 0.81422 1.19303 1.20674 1.18903 1.20019 0.88619 0.76806 0.83477 1.90567 1.70397 1.55013 1.31591 1.20014 0.94647 1.02633 0.89058 0.84763 1.21798 1.00561 0.94415 1.02837 1.24555 1.00904 0.98346 0.99325 1.19880 1.02721 1.00896 0.94774 1.20020 1.02209 0.97838 0.94505 1.25256 1.10954 1.05072 0.90803 1.98310 1.95811 1.93371 1.13357 1.84261 1.46018 1.26338 0.98947 0.92096 0.88506 0.92104 0.87864 0.87701 0.90428 0.91163 0.91560 0.93647 0.92854 0.89144 0.83962 0.84307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.56 101.05 1.07 1.45 16 2 O -0.36 -5.34 10.57 -39.25 -0.41 -5.75 16 3 C 0.47 7.95 7.96 36.01 0.29 8.23 16 4 O -0.51 -9.94 15.73 -18.75 -0.29 -10.23 16 5 C -0.12 -2.15 6.11 -27.88 -0.17 -2.32 16 6 C 0.13 2.72 4.67 -4.04 -0.02 2.70 16 7 N -0.45 -10.25 2.41 -114.81 -0.28 -10.53 16 8 C -0.35 -7.83 6.82 -14.93 -0.10 -7.93 16 9 H 0.09 1.83 7.90 -52.48 -0.41 1.41 16 10 C 0.05 1.19 3.46 -17.47 -0.06 1.13 16 11 N -0.85 -20.88 11.80 55.50 0.65 -20.23 16 12 Si 0.90 17.44 29.59 -169.99 -5.03 12.41 16 13 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 14 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 15 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 16 C 0.52 12.19 6.32 -10.99 -0.07 12.12 16 17 O -0.59 -14.98 14.73 5.55 0.08 -14.90 16 18 C -0.04 -0.84 2.24 -92.92 -0.21 -1.05 16 19 H 0.14 2.99 4.75 -51.93 -0.25 2.75 16 20 C -0.14 -2.46 9.00 37.16 0.33 -2.13 16 21 C -0.11 -2.19 4.67 -36.02 -0.17 -2.36 16 22 C -0.15 -2.75 10.01 -41.20 -0.41 -3.17 16 23 C -0.11 -1.81 10.13 -41.15 -0.42 -2.23 16 24 C -0.18 -2.93 7.10 29.08 0.21 -2.72 16 25 Cl -0.04 -0.52 29.29 -51.86 -1.52 -2.04 16 26 S 0.18 3.23 21.89 -107.50 -2.35 0.88 16 27 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 28 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 30 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 31 H 0.10 1.63 8.14 -51.93 -0.42 1.20 16 32 H 0.08 1.66 7.96 -51.93 -0.41 1.25 16 33 H 0.07 1.64 7.45 -51.93 -0.39 1.25 16 34 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 35 H 0.04 0.75 7.86 -51.93 -0.41 0.35 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.09 1.63 6.20 -51.93 -0.32 1.31 16 38 H 0.14 2.40 8.06 -52.49 -0.42 1.98 16 39 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 361.76 15.07 5.45 5.45 Total: -1.00 -27.92 361.76 -8.14 -36.06 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -4.71 Total: 7.13 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 0.27 Total: 1.73 kcal Atomic # 7 Polarization: -31.13 SS G_CDS: 0.38 Total: -30.76 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.63 Total: -30.88 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.41 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -2.35 Total: 0.88 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.52 Total: -2.04 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -27.92 -8.14 -36.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342773.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.312 kcal (2) G-P(sol) polarization free energy of solvation -27.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds