Wall clock time and date at job start Wed Apr 1 2020 03:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34227 * 116.99782 * 2 1 4 4 O 1.20823 * 120.00362 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99678 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.46945 * 179.97438 * 5 3 2 7 7 N 1.46505 * 109.46708 * 180.02562 * 6 5 3 8 8 C 1.36905 * 119.99978 * 96.34007 * 7 6 5 9 9 H 1.07997 * 120.00100 * 221.69078 * 8 7 6 10 10 C 1.39023 * 119.99899 * 41.41207 * 8 7 6 11 11 N 1.31382 * 119.99890 * 10.58496 * 10 8 7 12 12 Si 1.86798 * 120.00010 * 190.57927 * 10 8 7 13 13 H 1.48504 * 109.46948 * 60.00324 * 12 10 8 14 14 H 1.48496 * 109.46902 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47203 * 300.00656 * 12 10 8 16 16 C 1.34773 * 120.00011 * 276.33728 * 7 6 5 17 17 O 1.21626 * 120.00448 * 356.08637 * 16 7 6 18 18 C 1.47500 * 120.00039 * 176.08283 * 16 7 6 19 19 C 1.39828 * 120.08183 * 34.73596 * 18 16 7 20 20 C 1.37862 * 119.89789 * 180.02562 * 19 18 16 21 21 F 1.35106 * 119.96198 * 179.97438 * 20 19 18 22 22 C 1.39169 * 120.07081 * 0.02562 * 20 19 18 23 23 O 1.35795 * 119.91837 * 179.97438 * 22 20 19 24 24 C 1.39002 * 120.16531 * 359.97438 * 22 20 19 25 25 Cl 1.73603 * 119.94799 * 179.97438 * 24 22 20 26 26 C 1.37853 * 120.10162 * 359.67796 * 24 22 20 27 27 H 1.08994 * 109.47204 * 300.00448 * 1 2 3 28 28 H 1.09001 * 109.46890 * 60.00027 * 1 2 3 29 29 H 1.08995 * 109.47323 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46521 * 59.99985 * 5 3 2 31 31 H 1.08998 * 109.47429 * 300.00470 * 5 3 2 32 32 H 1.08998 * 109.46890 * 60.00879 * 6 5 3 33 33 H 1.08998 * 109.47178 * 299.99953 * 6 5 3 34 34 H 0.97006 * 120.00129 * 179.97438 * 11 10 8 35 35 H 1.08008 * 120.04846 * 359.97438 * 19 18 16 36 36 H 0.96698 * 113.99827 * 90.00401 * 23 22 20 37 37 H 1.07997 * 120.03643 * 180.30093 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0001 2.7420 -0.0002 7 7 5.4632 2.8186 -0.0002 8 6 6.1399 2.9845 -1.1787 9 1 7.0452 2.4258 -1.3648 10 6 5.6586 3.8679 -2.1382 11 7 4.6811 4.6934 -1.8396 12 14 6.4018 3.8814 -3.8519 13 1 6.2301 2.5450 -4.4764 14 1 5.7179 4.9068 -4.6800 15 1 7.8487 4.2032 -3.7615 16 6 6.1429 2.7258 1.1598 17 8 5.5401 2.6500 2.2135 18 6 7.6178 2.7160 1.1517 19 6 8.3186 3.4740 0.2085 20 6 9.6971 3.4616 0.2040 21 9 10.3755 4.1932 -0.7071 22 6 10.3907 2.6956 1.1362 23 8 11.7485 2.6853 1.1286 24 6 9.6969 1.9410 2.0750 25 17 10.5677 0.9869 3.2349 26 6 8.3185 1.9539 2.0904 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.9563 0.7805 -0.8892 31 1 3.9558 0.7809 0.8907 32 1 3.6102 3.2366 0.8894 33 1 3.6108 3.2356 -0.8906 34 1 4.3455 5.3101 -2.5090 35 1 7.7806 4.0677 -0.5159 36 1 12.1501 3.3678 1.6836 37 1 7.7806 1.3710 2.8234 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871343345.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:54 Heat of formation + Delta-G solvation = -194.576958 kcal Electronic energy + Delta-G solvation = -27905.316619 eV Core-core repulsion = 23395.491733 eV Total energy + Delta-G solvation = -4509.824886 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.066 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.97766 -41.63044 -41.20973 -40.00216 -37.83477 -37.62649 -37.37749 -36.95869 -33.92910 -32.84950 -31.54328 -30.81675 -28.67968 -27.13137 -25.84306 -24.21542 -23.76227 -21.88742 -21.26981 -19.95619 -19.58060 -18.82125 -18.21026 -17.82393 -17.64278 -17.59963 -17.23500 -17.10953 -16.36476 -16.25115 -16.04061 -15.73524 -15.36504 -15.16976 -14.93344 -14.72548 -14.22119 -14.07355 -13.82131 -13.64611 -13.54850 -13.45451 -13.12271 -12.83411 -12.81086 -12.71289 -12.25254 -12.21050 -12.13290 -11.97206 -11.79208 -11.76073 -11.59985 -11.10797 -10.62397 -9.86888 -9.77125 -9.55787 -8.34618 -6.20569 -0.43438 -0.09306 0.87443 1.14099 1.43238 1.48684 1.56078 1.61818 1.77871 2.26792 2.45914 2.71758 2.81966 3.03777 3.24353 3.76068 3.80261 3.87175 4.08803 4.13549 4.22193 4.31688 4.32757 4.38119 4.59632 4.65119 4.69505 4.73240 4.81682 4.98218 5.23445 5.28233 5.35077 5.47558 5.52604 5.87600 6.30899 6.56271 6.70641 6.99768 7.37910 7.81331 8.65497 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.010727 B = 0.003944 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.618155 B = 7098.205192 C = 9161.123535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.363 6.363 3 C 0.474 3.526 4 O -0.536 6.536 5 C -0.117 4.117 6 C 0.133 3.867 7 N -0.431 5.431 8 C -0.356 4.356 9 H 0.106 0.894 10 C 0.013 3.987 11 N -0.886 5.886 12 Si 0.969 3.031 13 H -0.262 1.262 14 H -0.284 1.284 15 H -0.260 1.260 16 C 0.504 3.496 17 O -0.617 6.617 18 C -0.082 4.082 19 C -0.086 4.086 20 C 0.064 3.936 21 F -0.130 7.130 22 C 0.109 3.891 23 O -0.479 6.479 24 C -0.049 4.049 25 Cl -0.031 7.031 26 C -0.058 4.058 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.137 0.863 30 H 0.120 0.880 31 H 0.105 0.895 32 H 0.038 0.962 33 H 0.102 0.898 34 H 0.276 0.724 35 H 0.164 0.836 36 H 0.415 0.585 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.948 -7.145 2.675 9.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.318 3.682 4 O -0.426 6.426 5 C -0.155 4.155 6 C 0.009 3.991 7 N -0.147 5.147 8 C -0.483 4.483 9 H 0.123 0.877 10 C -0.192 4.192 11 N -0.521 5.521 12 Si 0.792 3.208 13 H -0.186 1.186 14 H -0.210 1.210 15 H -0.184 1.184 16 C 0.294 3.706 17 O -0.505 6.505 18 C -0.085 4.085 19 C -0.106 4.106 20 C 0.044 3.956 21 F -0.109 7.109 22 C 0.062 3.938 23 O -0.293 6.293 24 C -0.077 4.077 25 Cl -0.002 7.002 26 C -0.078 4.078 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.155 0.845 30 H 0.138 0.862 31 H 0.123 0.877 32 H 0.056 0.944 33 H 0.120 0.880 34 H 0.086 0.914 35 H 0.181 0.819 36 H 0.276 0.724 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.312 -7.249 2.754 9.399 hybrid contribution -0.063 0.935 -0.580 1.103 sum 5.249 -6.313 2.173 8.493 Atomic orbital electron populations 1.23576 0.74780 1.05843 1.02456 1.86507 1.25139 1.32387 1.83861 1.23793 0.92074 0.81276 0.71087 1.90649 1.67837 1.37443 1.46656 1.21690 0.86964 1.00652 1.06243 1.21050 0.81643 0.93013 1.03407 1.43408 1.04850 1.60890 1.05525 1.19758 1.11032 1.24080 0.93452 0.87654 1.26183 0.96476 0.93412 1.03117 1.69902 1.26659 1.19403 1.36183 0.85328 0.79123 0.78648 0.77688 1.18612 1.20970 1.18409 1.18504 0.87332 0.80961 0.83782 1.90651 1.70630 1.57384 1.31793 1.19549 0.93302 0.99210 0.96457 1.22089 0.91657 0.98604 0.98228 1.17743 0.89586 0.96212 0.92037 1.91501 1.79784 1.75101 1.64493 1.18055 0.84590 0.96923 0.94259 1.84773 1.12913 1.59554 1.72011 1.20748 0.91791 1.00148 0.94973 1.98367 1.75817 1.69546 1.56485 1.21071 0.91463 0.97674 0.97632 0.92140 0.92087 0.84462 0.86246 0.87729 0.94377 0.87971 0.91436 0.81882 0.72423 0.83077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.78 16 2 O -0.36 -10.93 10.57 -51.39 -0.54 -11.47 16 3 C 0.47 17.49 7.96 71.24 0.57 18.06 16 4 O -0.54 -23.05 15.73 21.97 0.35 -22.70 16 5 C -0.12 -4.43 6.09 29.85 0.18 -4.24 16 6 C 0.13 6.19 4.15 86.38 0.36 6.55 16 7 N -0.43 -20.06 2.52 -639.17 -1.61 -21.67 16 8 C -0.36 -16.10 6.14 84.09 0.52 -15.58 16 9 H 0.11 4.51 6.36 -2.91 -0.02 4.49 16 10 C 0.01 0.60 5.09 84.95 0.43 1.03 16 11 N -0.89 -44.59 11.18 21.68 0.24 -44.35 16 12 Si 0.97 36.69 29.57 68.60 2.03 38.72 16 13 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 14 H -0.28 -10.91 7.11 99.48 0.71 -10.21 16 15 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 16 C 0.50 23.02 7.32 86.69 0.63 23.65 16 17 O -0.62 -30.82 16.47 -4.11 -0.07 -30.89 16 18 C -0.08 -3.13 5.47 -20.09 -0.11 -3.24 16 19 C -0.09 -3.18 7.73 22.57 0.17 -3.00 16 20 C 0.06 2.06 7.30 22.40 0.16 2.23 16 21 F -0.13 -4.22 17.10 44.97 0.77 -3.45 16 22 C 0.11 3.04 6.71 22.68 0.15 3.19 16 23 O -0.48 -10.85 12.80 -91.25 -1.17 -12.02 16 24 C -0.05 -1.37 6.32 22.36 0.14 -1.23 16 25 Cl -0.03 -0.73 28.49 -2.72 -0.08 -0.81 16 26 C -0.06 -1.89 9.38 22.54 0.21 -1.68 16 27 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 28 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 29 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.12 4.14 8.14 -2.39 -0.02 4.12 16 31 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 32 H 0.04 1.95 7.52 -2.39 -0.02 1.94 16 33 H 0.10 5.21 5.45 -2.39 -0.01 5.20 16 34 H 0.28 13.30 8.31 -92.70 -0.77 12.53 16 35 H 0.16 6.70 5.63 -2.91 -0.02 6.68 16 36 H 0.42 5.31 9.06 -74.06 -0.67 4.64 16 37 H 0.15 4.70 7.99 -2.91 -0.02 4.68 16 Total: -1.00 -61.47 346.96 5.03 -56.43 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.49 Total: 24.70 kcal Atomic # 6 Polarization: 22.89 SS G_CDS: 4.62 Total: 27.51 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: -1.37 Total: -66.02 kcal Atomic # 8 Polarization: -75.65 SS G_CDS: -1.43 Total: -77.09 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.77 Total: -3.45 kcal Atomic # 14 Polarization: 36.69 SS G_CDS: 2.03 Total: 38.72 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.08 Total: -0.81 kcal Total: -61.47 5.03 -56.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871343345.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.142 kcal (2) G-P(sol) polarization free energy of solvation -61.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds