Wall clock time and date at job start Wed Apr 1 2020 03:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34218 * 116.99985 * 2 1 4 4 O 1.20826 * 120.00177 * 359.97438 * 3 2 1 5 5 C 1.50707 * 120.00040 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.99769 * 40.35399 * 5 3 2 7 7 C 1.54321 * 109.87927 * 279.25953 * 5 3 2 8 8 C 1.55160 * 102.94211 * 218.38660 * 7 5 3 9 9 F 1.39901 * 111.00376 * 153.57811 * 8 7 5 10 10 F 1.39894 * 111.00524 * 277.43340 * 8 7 5 11 11 C 1.54691 * 101.67523 * 35.33820 * 8 7 5 12 12 N 1.47016 * 109.88086 * 161.45175 * 5 3 2 13 13 C 1.34776 * 125.65253 * 298.31739 * 12 5 3 14 14 O 1.21760 * 119.99605 * 3.37748 * 13 12 5 15 15 C 1.46241 * 120.00254 * 183.37752 * 13 12 5 16 16 S 1.75663 * 125.22706 * 352.67198 * 15 13 12 17 17 C 1.75473 * 92.09227 * 180.02562 * 16 15 13 18 18 C 1.32766 * 111.36172 * 0.02562 * 17 16 15 19 19 C 1.39542 * 125.22612 * 172.71508 * 15 13 12 20 20 C 1.40542 * 123.71899 * 359.97438 * 19 15 13 21 21 H 1.08003 * 119.99736 * 33.54158 * 20 19 15 22 22 C 1.40301 * 120.00121 * 213.54944 * 20 19 15 23 23 N 1.30642 * 120.00089 * 355.40691 * 22 20 19 24 24 Si 1.86806 * 120.00061 * 175.41379 * 22 20 19 25 25 H 1.48505 * 109.46949 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.46983 * 119.99547 * 24 22 20 27 27 H 1.48496 * 109.46903 * 239.99935 * 24 22 20 28 28 H 1.08991 * 109.46927 * 60.00199 * 1 2 3 29 29 H 1.09000 * 109.47013 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47273 * 299.99817 * 1 2 3 31 31 H 1.08995 * 110.72617 * 336.75150 * 7 5 3 32 32 H 1.09004 * 110.71919 * 99.84833 * 7 5 3 33 33 H 1.08997 * 110.39434 * 204.36652 * 11 8 7 34 34 H 1.09003 * 110.23517 * 82.10887 * 11 8 7 35 35 H 1.07996 * 124.31995 * 179.72608 * 17 16 15 36 36 H 1.08000 * 122.78591 * 180.02562 * 18 17 16 37 37 H 0.96999 * 119.99776 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9792 0.5150 -0.6641 7 6 4.1032 1.0688 1.4315 8 6 5.2853 2.0710 1.5071 9 9 5.5186 2.4726 2.8267 10 9 6.4417 1.5263 0.9388 11 6 4.7542 3.2463 0.6529 12 7 3.9969 2.6100 -0.4403 13 6 3.7459 3.1590 -1.6453 14 8 3.0599 2.5624 -2.4551 15 6 4.2976 4.4714 -1.9801 16 16 5.1459 5.5289 -0.8630 17 6 5.3879 6.7487 -2.1009 18 6 4.8629 6.3717 -3.2606 19 6 4.2302 5.0763 -3.2358 20 6 3.6133 4.4879 -4.3531 21 1 2.7449 3.8593 -4.2218 22 6 4.1255 4.7170 -5.6390 23 7 5.1197 5.5477 -5.8077 24 14 3.3860 3.8345 -7.1100 25 1 2.2800 2.9543 -6.6544 26 1 2.8588 4.8342 -8.0733 27 1 4.4314 3.0131 -7.7713 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.3398 1.3165 2.1690 32 1 4.4524 0.0454 1.5689 33 1 5.5832 3.8288 0.2511 34 1 4.0983 3.8801 1.2499 35 1 5.8948 7.6885 -1.9389 36 1 4.9069 6.9841 -4.1491 37 1 5.4741 5.7057 -6.6967 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893539532.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:05 Heat of formation + Delta-G solvation = -178.682004 kcal Electronic energy + Delta-G solvation = -28799.672517 eV Core-core repulsion = 24304.953383 eV Total energy + Delta-G solvation = -4494.719134 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.068 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.94547 -47.12373 -40.62382 -38.81346 -36.86936 -36.08258 -35.63624 -33.08346 -31.50277 -29.65816 -28.90524 -27.49713 -26.39020 -24.27443 -22.38141 -21.98734 -21.12719 -19.62524 -18.72345 -18.22952 -17.48384 -17.29767 -16.87937 -16.47052 -16.23447 -15.76047 -15.63480 -15.32538 -14.85709 -14.28270 -14.13150 -14.02818 -13.72079 -13.52659 -13.42921 -13.19494 -12.95538 -12.54465 -12.43658 -12.41446 -12.18750 -12.04916 -11.84376 -11.79073 -11.50516 -11.20011 -11.04584 -10.96186 -10.69372 -10.35651 -10.29891 -10.22886 -9.55684 -9.30550 -8.73427 -8.40212 -7.55301 -7.14354 -7.04851 -4.62059 2.03191 2.29858 2.62484 2.93720 2.94144 2.99151 3.09587 3.19801 3.46006 3.63672 3.66829 3.75310 3.83382 4.02586 4.22476 4.40319 4.83241 4.84879 5.05764 5.10921 5.13253 5.22567 5.25210 5.49725 5.57294 5.66424 5.72146 5.91926 6.07483 6.44884 6.65823 6.83540 7.10072 7.16670 7.40803 7.62105 7.90201 8.06861 8.32693 8.50884 8.63637 9.25958 9.86942 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.010730 B = 0.004886 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.788025 B = 5728.790543 C = 7462.628714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.362 6.362 3 C 0.456 3.544 4 O -0.478 6.478 5 C 0.156 3.844 6 H 0.117 0.883 7 C -0.152 4.152 8 C 0.279 3.721 9 F -0.183 7.183 10 F -0.179 7.179 11 C 0.067 3.933 12 N -0.613 5.613 13 C 0.627 3.373 14 O -0.541 6.541 15 C -0.418 4.418 16 S -0.035 6.035 17 C -0.217 4.217 18 C -0.095 4.095 19 C 0.149 3.851 20 C -0.380 4.380 21 H 0.106 0.894 22 C 0.068 3.932 23 N -0.783 5.783 24 Si 0.926 3.074 25 H -0.253 1.253 26 H -0.270 1.270 27 H -0.269 1.269 28 H 0.064 0.936 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.099 0.901 35 H 0.137 0.863 36 H 0.145 0.855 37 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.202 -6.945 10.401 12.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.278 6.278 3 C 0.295 3.705 4 O -0.362 6.362 5 C 0.049 3.951 6 H 0.134 0.866 7 C -0.191 4.191 8 C 0.241 3.759 9 F -0.164 7.164 10 F -0.160 7.160 11 C -0.059 4.059 12 N -0.352 5.352 13 C 0.427 3.573 14 O -0.421 6.421 15 C -0.537 4.537 16 S 0.221 5.779 17 C -0.350 4.350 18 C -0.127 4.127 19 C 0.137 3.863 20 C -0.412 4.412 21 H 0.124 0.876 22 C -0.153 4.153 23 N -0.408 5.408 24 Si 0.749 3.251 25 H -0.176 1.176 26 H -0.195 1.195 27 H -0.194 1.194 28 H 0.083 0.917 29 H 0.117 0.883 30 H 0.078 0.922 31 H 0.129 0.871 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.117 0.883 35 H 0.155 0.845 36 H 0.162 0.838 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.269 -6.853 11.158 13.156 hybrid contribution -0.493 -0.008 -1.951 2.012 sum -1.761 -6.861 9.207 11.616 Atomic orbital electron populations 1.23223 0.76526 1.03321 1.02619 1.86468 1.23323 1.33508 1.84530 1.23926 0.91917 0.81684 0.72992 1.90693 1.66348 1.36220 1.42983 1.20833 0.87731 0.89988 0.96497 0.86551 1.23562 0.97363 1.01975 0.96191 1.21731 0.82959 0.93915 0.77274 1.93025 1.95404 1.91506 1.36423 1.93062 1.51783 1.86734 1.84399 1.23219 0.99042 0.93597 0.90036 1.48091 1.57083 1.15379 1.14621 1.16568 0.78853 0.84248 0.77618 1.90711 1.40314 1.63691 1.47402 1.22499 1.31094 1.00512 0.99576 1.82821 1.63802 1.14453 1.16823 1.25265 1.08658 1.02752 0.98353 1.21722 0.97547 0.96642 0.96792 1.17933 0.88173 0.89280 0.90884 1.19911 1.10542 1.21753 0.88951 0.87603 1.26320 0.93962 0.93724 1.01276 1.69633 1.19120 1.26359 1.25710 0.85939 0.80328 0.79884 0.78936 1.17641 1.19527 1.19435 0.91726 0.88278 0.92161 0.87102 0.86224 0.85996 0.88302 0.84495 0.83773 0.90148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.49 16 2 O -0.36 -5.26 10.56 -39.23 -0.41 -5.68 16 3 C 0.46 7.88 6.34 36.01 0.23 8.11 16 4 O -0.48 -9.95 15.81 -18.99 -0.30 -10.25 16 5 C 0.16 2.49 3.39 -68.11 -0.23 2.26 16 6 H 0.12 1.77 8.14 -51.93 -0.42 1.34 16 7 C -0.15 -1.75 6.09 -24.90 -0.15 -1.91 16 8 C 0.28 3.78 2.63 -24.70 -0.07 3.71 16 9 F -0.18 -2.36 17.24 2.25 0.04 -2.32 16 10 F -0.18 -2.63 17.23 2.25 0.04 -2.60 16 11 C 0.07 1.11 5.15 -2.64 -0.01 1.10 16 12 N -0.61 -12.04 2.75 -166.14 -0.46 -12.49 16 13 C 0.63 15.39 7.22 -13.05 -0.09 15.29 16 14 O -0.54 -14.73 14.28 5.13 0.07 -14.65 16 15 C -0.42 -10.51 6.42 -35.88 -0.23 -10.74 16 16 S -0.03 -0.73 18.65 -107.50 -2.01 -2.73 16 17 C -0.22 -4.65 11.07 28.86 0.32 -4.33 16 18 C -0.10 -2.30 9.04 -39.12 -0.35 -2.65 16 19 C 0.15 3.94 5.62 -106.21 -0.60 3.34 16 20 C -0.38 -10.22 8.32 -37.94 -0.32 -10.53 16 21 H 0.11 3.00 6.37 -52.48 -0.33 2.67 16 22 C 0.07 1.66 5.47 -17.28 -0.09 1.57 16 23 N -0.78 -18.88 10.91 55.57 0.61 -18.27 16 24 Si 0.93 18.75 29.57 -169.99 -5.03 13.73 16 25 H -0.25 -5.32 7.11 56.52 0.40 -4.91 16 26 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 27 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 28 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 29 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 31 H 0.11 1.12 7.84 -51.93 -0.41 0.72 16 32 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.12 2.16 4.97 -28.40 -0.14 2.02 16 34 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.14 2.48 8.06 -52.49 -0.42 2.06 16 36 H 0.14 3.46 6.60 -52.49 -0.35 3.12 16 37 H 0.29 6.21 8.29 -40.82 -0.34 5.87 16 LS Contribution 336.62 15.07 5.07 5.07 Total: -1.00 -31.41 336.62 -6.23 -37.64 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -3.32 Total: 5.85 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -0.53 Total: 6.71 kcal Atomic # 7 Polarization: -30.92 SS G_CDS: 0.15 Total: -30.77 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.64 Total: -30.58 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.08 Total: -4.92 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.73 kcal Atomic # 16 Polarization: -0.73 SS G_CDS: -2.01 Total: -2.73 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.41 -6.23 -37.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893539532.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.045 kcal (2) G-P(sol) polarization free energy of solvation -31.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds