Wall clock time and date at job start Wed Apr 1 2020 03:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47430 * 2 1 4 4 C 1.50703 * 109.47190 * 120.00625 * 2 1 3 5 5 O 1.21280 * 120.00072 * 100.00212 * 4 2 1 6 6 N 1.34779 * 119.99816 * 279.99755 * 4 2 1 7 7 C 1.46500 * 119.99970 * 180.02562 * 6 4 2 8 8 C 1.50699 * 109.47003 * 179.97438 * 7 6 4 9 9 C 1.38238 * 119.98782 * 270.25143 * 8 7 6 10 10 C 1.38212 * 120.01544 * 180.21353 * 9 8 7 11 11 C 1.38361 * 119.98341 * 359.50741 * 10 9 8 12 12 Cl 1.73597 * 120.00859 * 180.27890 * 11 10 9 13 13 C 1.38346 * 119.97306 * 0.25744 * 11 10 9 14 14 C 1.38210 * 119.98768 * 0.02562 * 13 11 10 15 15 S 1.81402 * 109.46895 * 240.00299 * 2 1 3 16 16 O 1.42100 * 108.58166 * 174.48880 * 15 2 1 17 17 O 1.42103 * 108.57990 * 305.51369 * 15 2 1 18 18 C 1.81396 * 101.92305 * 59.99979 * 15 2 1 19 19 C 1.50695 * 109.47357 * 180.02562 * 18 15 2 20 20 H 1.08002 * 119.99847 * 359.97438 * 19 18 15 21 21 C 1.37883 * 120.00113 * 180.02562 * 19 18 15 22 22 N 1.31509 * 119.99765 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00055 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47124 * 90.00198 * 23 21 19 25 25 H 1.48498 * 109.47298 * 210.00179 * 23 21 19 26 26 H 1.48502 * 109.47321 * 330.00259 * 23 21 19 27 27 H 1.09001 * 109.46996 * 299.99261 * 1 2 3 28 28 H 1.08999 * 109.47479 * 59.99473 * 1 2 3 29 29 H 1.09000 * 109.47430 * 180.02562 * 1 2 3 30 30 H 0.96999 * 119.99969 * 359.97438 * 6 4 2 31 31 H 1.08992 * 109.47267 * 59.99738 * 7 6 4 32 32 H 1.08996 * 109.46657 * 299.99345 * 7 6 4 33 33 H 1.08004 * 119.99455 * 359.97438 * 9 8 7 34 34 H 1.08002 * 120.01126 * 179.79322 * 10 9 8 35 35 H 1.08002 * 120.00348 * 180.02562 * 13 11 10 36 36 H 1.08002 * 119.99295 * 179.97438 * 14 13 11 37 37 H 1.09000 * 109.46924 * 300.00025 * 18 15 2 38 38 H 1.09002 * 109.47211 * 59.99763 * 18 15 2 39 39 H 0.97000 * 119.99857 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 8 2.4064 -1.8618 1.1556 6 7 2.0659 -0.0666 2.4139 7 6 2.5548 -0.7571 3.6099 8 6 2.4901 0.1768 4.7909 9 6 3.5701 0.9854 5.0923 10 6 3.5131 1.8389 6.1778 11 6 2.3709 1.8914 6.9569 12 17 2.2959 2.9685 8.3162 13 6 1.2885 1.0855 6.6519 14 6 1.3490 0.2281 5.5695 15 16 2.1346 -0.8551 -1.4812 16 8 3.5495 -0.7331 -1.5286 17 8 1.5478 -2.1484 -1.5286 18 6 1.4228 0.1516 -2.8118 19 6 1.8268 -0.4210 -4.1459 20 1 2.4499 -1.3021 -4.1891 21 6 1.4019 0.1807 -5.3115 22 7 0.6437 1.2539 -5.2590 23 14 1.9034 -0.5286 -6.9653 24 1 0.8928 -1.5244 -7.4037 25 1 1.9887 0.5641 -7.9672 26 1 3.2273 -1.1894 -6.8396 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.7671 0.8543 2.4737 31 1 3.5863 -1.0715 3.4518 32 1 1.9339 -1.6318 3.8036 33 1 4.4601 0.9473 4.4816 34 1 4.3582 2.4682 6.4152 35 1 0.3966 1.1264 7.2594 36 1 0.5042 -0.4013 5.3316 37 1 0.3359 0.1471 -2.7291 38 1 1.7892 1.1748 -2.7291 39 1 0.3444 1.6769 -6.0790 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905265501.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:48 Heat of formation + Delta-G solvation = -97.754673 kcal Electronic energy + Delta-G solvation = -24749.395933 eV Core-core repulsion = 20809.982752 eV Total energy + Delta-G solvation = -3939.413181 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.31162 -39.46512 -37.03028 -36.01164 -35.19391 -34.93661 -33.58633 -33.21963 -31.60389 -31.36287 -29.05260 -26.69641 -24.48690 -23.57574 -23.37525 -21.88901 -20.82913 -18.25104 -17.72334 -17.36539 -17.01152 -16.40068 -16.27611 -15.56255 -15.48532 -15.39559 -15.01805 -14.67608 -14.30067 -14.07177 -13.99604 -13.96078 -13.63621 -13.21177 -12.73183 -12.60196 -12.39596 -12.03886 -11.99934 -11.92384 -11.82864 -11.78981 -11.39577 -11.30066 -11.07735 -11.02064 -10.89293 -10.60664 -10.22089 -10.05264 -9.79986 -9.57674 -9.34290 -9.18955 -9.05701 -8.71625 -6.34882 -4.43754 0.49585 0.76571 0.84925 1.63671 2.47719 2.79868 3.22586 3.27817 3.28140 3.34948 3.77287 4.15706 4.22729 4.23806 4.37419 4.39403 4.53849 4.74675 4.78828 4.86424 5.00457 5.06977 5.11621 5.18212 5.32330 5.41102 5.44314 5.55529 5.64569 5.70154 5.71400 6.00656 6.04899 6.12277 6.24578 6.61502 6.65687 7.18293 7.47754 7.73129 7.98062 8.58045 9.23294 10.76973 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.026925 B = 0.002012 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.663512 B =13912.040947 C =14236.752068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.632 4.632 3 H 0.149 0.851 4 C 0.547 3.453 5 O -0.521 6.521 6 N -0.721 5.721 7 C 0.156 3.844 8 C -0.102 4.102 9 C -0.087 4.087 10 C -0.112 4.112 11 C -0.029 4.029 12 Cl -0.070 7.070 13 C -0.113 4.113 14 C -0.087 4.087 15 S 2.418 3.582 16 O -0.949 6.949 17 O -0.932 6.932 18 C -0.403 4.403 19 C -0.528 4.528 20 H 0.073 0.927 21 C 0.075 3.925 22 N -0.882 5.882 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.281 1.281 26 H -0.266 1.266 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.404 0.596 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.396 5.183 24.720 25.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.736 4.736 3 H 0.167 0.833 4 C 0.332 3.668 5 O -0.397 6.397 6 N -0.374 5.374 7 C 0.033 3.967 8 C -0.103 4.103 9 C -0.105 4.105 10 C -0.130 4.130 11 C -0.056 4.056 12 Cl -0.041 7.041 13 C -0.131 4.131 14 C -0.106 4.106 15 S 2.598 3.402 16 O -0.946 6.946 17 O -0.929 6.929 18 C -0.538 4.538 19 C -0.567 4.567 20 H 0.091 0.909 21 C -0.131 4.131 22 N -0.518 5.518 23 Si 0.732 3.268 24 H -0.199 1.199 25 H -0.207 1.207 26 H -0.190 1.190 27 H 0.089 0.911 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.239 0.761 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.315 3.811 24.764 25.058 hybrid contribution -0.446 1.271 -0.360 1.395 sum -0.131 5.083 24.405 24.929 Atomic orbital electron populations 1.21554 0.87864 1.04824 1.04794 1.30996 1.08920 1.15689 1.17999 0.83322 1.19498 0.77308 0.86288 0.83689 1.90860 1.46888 1.16583 1.85346 1.45904 1.67041 1.16983 1.07518 1.20266 1.01563 0.93626 0.81208 1.20018 0.94619 0.98321 0.97346 1.21158 0.98730 0.94375 0.96262 1.21107 0.97186 0.99803 0.94951 1.21042 0.96530 0.95930 0.92052 1.98387 1.98505 1.63577 1.43623 1.21088 0.97971 0.95896 0.98163 1.21124 0.97701 0.97847 0.93887 1.08748 0.76408 0.78064 0.76941 1.93462 1.28425 1.87405 1.85338 1.93468 1.79104 1.35567 1.84798 1.27606 1.08014 1.08912 1.09311 1.20362 1.34472 1.13829 0.88085 0.90913 1.24923 0.94021 0.94451 0.99677 1.69937 1.33643 1.19247 1.28993 0.86343 0.79751 0.78912 0.81816 1.19858 1.20661 1.19017 0.91063 0.89092 0.90122 0.76103 0.89877 0.89946 0.84498 0.84594 0.84643 0.84617 0.89333 0.89689 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 8.92 37.15 0.33 -1.35 16 2 C -0.63 -9.52 3.11 -27.88 -0.09 -9.60 16 3 H 0.15 1.69 8.14 -51.92 -0.42 1.27 16 4 C 0.55 8.55 7.00 -10.98 -0.08 8.47 16 5 O -0.52 -10.42 15.65 -3.35 -0.05 -10.48 16 6 N -0.72 -7.80 5.55 -61.47 -0.34 -8.14 16 7 C 0.16 1.47 5.80 -5.19 -0.03 1.44 16 8 C -0.10 -0.76 5.25 -104.62 -0.55 -1.31 16 9 C -0.09 -0.61 9.70 -39.59 -0.38 -0.99 16 10 C -0.11 -0.77 9.83 -39.55 -0.39 -1.15 16 11 C -0.03 -0.21 6.32 -39.50 -0.25 -0.46 16 12 Cl -0.07 -0.50 28.96 -51.86 -1.50 -2.00 16 13 C -0.11 -0.75 9.83 -39.55 -0.39 -1.14 16 14 C -0.09 -0.58 9.70 -39.59 -0.38 -0.96 16 15 S 2.42 52.06 3.59 -107.50 -0.39 51.67 16 16 O -0.95 -23.26 18.10 -57.83 -1.05 -24.30 16 17 O -0.93 -22.93 17.40 -62.66 -1.09 -24.02 16 18 C -0.40 -9.33 5.11 36.00 0.18 -9.14 16 19 C -0.53 -14.49 9.13 -34.44 -0.31 -14.81 16 20 H 0.07 2.01 7.71 -52.49 -0.40 1.60 16 21 C 0.08 2.04 5.46 -17.82 -0.10 1.94 16 22 N -0.88 -24.23 13.29 55.43 0.74 -23.50 16 23 Si 0.91 20.90 29.54 -169.99 -5.02 15.88 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.09 1.11 6.56 -51.93 -0.34 0.77 16 29 H 0.08 1.11 8.06 -51.93 -0.42 0.69 16 30 H 0.40 3.28 8.46 -40.82 -0.35 2.93 16 31 H 0.08 0.83 8.09 -51.93 -0.42 0.41 16 32 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 33 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 34 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.09 1.94 6.87 -51.92 -0.36 1.58 16 38 H 0.09 1.88 8.14 -51.92 -0.42 1.45 16 39 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 367.34 15.07 5.54 5.54 Total: -1.00 -36.19 367.34 -10.40 -46.60 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -4.80 Total: 1.83 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: -2.43 Total: -29.07 kcal Atomic # 7 Polarization: -32.04 SS G_CDS: 0.40 Total: -31.64 kcal Atomic # 8 Polarization: -56.61 SS G_CDS: -2.19 Total: -58.80 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 52.06 SS G_CDS: -0.39 Total: 51.67 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.50 Total: -2.00 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.19 -10.40 -46.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265501.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.159 kcal (2) G-P(sol) polarization free energy of solvation -36.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds