Wall clock time and date at job start Wed Apr 1 2020 03:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42905 * 114.00149 * 2 1 4 4 C 1.52997 * 109.47342 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47133 * 64.99445 * 4 3 2 6 6 C 1.37096 * 120.00185 * 269.99843 * 5 4 3 7 7 H 1.08009 * 119.99911 * 144.99941 * 6 5 4 8 8 C 1.38947 * 120.00237 * 325.00201 * 6 5 4 9 9 N 1.31416 * 119.99931 * 337.43447 * 8 6 5 10 10 Si 1.86802 * 120.00165 * 157.43004 * 8 6 5 11 11 H 1.48505 * 109.46755 * 60.00368 * 10 8 6 12 12 H 1.48497 * 109.47144 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47280 * 300.00459 * 10 8 6 14 14 C 1.34779 * 119.99865 * 90.00290 * 5 4 3 15 15 O 1.21292 * 120.00123 * 4.95695 * 14 5 4 16 16 C 1.50697 * 120.00078 * 184.95937 * 14 5 4 17 17 S 1.81400 * 109.47340 * 183.89698 * 16 14 5 18 18 O 1.42094 * 109.46796 * 289.05604 * 17 16 14 19 19 C 1.76194 * 103.00130 * 179.97438 * 17 16 14 20 20 C 1.38235 * 119.98870 * 269.72711 * 19 17 16 21 21 C 1.38216 * 120.01186 * 179.72769 * 20 19 17 22 22 C 1.38346 * 119.98917 * 0.54571 * 21 20 19 23 23 Cl 1.73598 * 120.01805 * 179.70230 * 22 21 20 24 24 C 1.38353 * 119.97356 * 359.73045 * 22 21 20 25 25 C 1.38220 * 119.98489 * 359.97438 * 24 22 21 26 26 H 1.09006 * 109.47232 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47901 * 300.00042 * 1 2 3 28 28 H 1.09003 * 109.47105 * 60.00715 * 1 2 3 29 29 H 1.08992 * 109.47022 * 59.99392 * 3 2 1 30 30 H 1.08997 * 109.46549 * 299.99610 * 3 2 1 31 31 H 1.09001 * 109.46979 * 304.99634 * 4 3 2 32 32 H 1.08995 * 109.47397 * 184.99824 * 4 3 2 33 33 H 0.96993 * 119.99791 * 184.82636 * 9 8 6 34 34 H 1.09006 * 109.47324 * 303.89500 * 16 14 5 35 35 H 1.08994 * 109.47213 * 63.89590 * 16 14 5 36 36 H 1.08001 * 119.99703 * 359.97438 * 20 19 17 37 37 H 1.08007 * 120.00923 * 180.26780 * 21 20 19 38 38 H 1.07995 * 120.01173 * 179.97438 * 24 22 21 39 39 H 1.07997 * 119.99199 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5639 -1.2508 6 6 4.0980 -0.7991 -1.3344 7 1 3.8629 -1.3066 -2.2584 8 6 4.5233 -1.5278 -0.2304 9 7 5.2172 -0.9391 0.7178 10 14 4.1085 -3.3440 -0.0938 11 1 4.6896 -4.0727 -1.2500 12 1 4.6735 -3.8873 1.1675 13 1 2.6336 -3.5162 -0.0907 14 6 4.2633 1.3328 -2.3200 15 8 4.2433 2.5415 -2.2207 16 6 4.6088 0.6908 -3.6389 17 16 5.0531 1.9763 -4.8392 18 8 3.8890 2.7033 -5.2072 19 6 5.4198 1.0512 -6.2932 20 6 6.7102 0.6141 -6.5270 21 6 6.9972 -0.1165 -7.6647 22 6 5.9950 -0.4005 -8.5752 23 17 6.3563 -1.3114 -10.0082 24 6 4.7049 0.0421 -8.3435 25 6 4.4178 0.7673 -7.2024 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3635 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.6885 1.8464 0.8899 30 1 1.6886 1.8463 -0.8900 31 1 3.8507 0.5686 0.8428 32 1 3.9784 2.1765 0.0902 33 1 5.5739 -1.4614 1.4531 34 1 5.4519 0.0132 -3.5034 35 1 3.7488 0.1315 -4.0071 36 1 7.4935 0.8400 -5.8186 37 1 8.0046 -0.4617 -7.8452 38 1 3.9222 -0.1790 -9.0541 39 1 3.4108 1.1132 -7.0217 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909557634.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:53 Heat of formation + Delta-G solvation = -108.193596 kcal Electronic energy + Delta-G solvation = -25433.315485 eV Core-core repulsion = 21493.449639 eV Total energy + Delta-G solvation = -3939.865847 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.51181 -40.14342 -38.59997 -37.53262 -36.88258 -36.61209 -33.52406 -32.12584 -32.03709 -31.70598 -29.62693 -27.31529 -26.48125 -24.00493 -23.90868 -23.61654 -21.07999 -19.48102 -18.65926 -18.21270 -17.90655 -17.18979 -17.10900 -16.68250 -16.54392 -16.29702 -16.15442 -15.99242 -15.57052 -15.38429 -15.18783 -14.56180 -14.49571 -14.39159 -13.88694 -13.61560 -13.49718 -13.23862 -13.01681 -12.88647 -12.70156 -12.66179 -12.58262 -12.47670 -12.44545 -12.10022 -11.88764 -11.84648 -11.34751 -11.05882 -10.59981 -10.48429 -10.10126 -10.05180 -9.45825 -9.34836 -8.25814 -5.94533 -0.33912 0.23739 0.79181 1.01952 1.42420 1.52286 1.58479 1.82531 1.94478 2.35287 2.49301 2.84750 2.96314 3.05158 3.21655 3.72042 3.86641 4.12505 4.20208 4.27784 4.31361 4.38752 4.43162 4.48050 4.54620 4.55271 4.58876 4.72685 4.79781 4.89443 4.91326 4.93459 5.11134 5.22479 5.36196 5.55295 5.71367 5.98358 6.36315 6.43148 7.15784 7.54453 7.98027 8.77646 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.012472 B = 0.003154 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.423069 B = 8875.880261 C = 9838.024040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.394 6.394 3 C 0.062 3.938 4 C 0.103 3.897 5 N -0.429 5.429 6 C -0.340 4.340 7 H 0.087 0.913 8 C 0.024 3.976 9 N -0.884 5.884 10 Si 0.970 3.030 11 H -0.263 1.263 12 H -0.281 1.281 13 H -0.279 1.279 14 C 0.473 3.527 15 O -0.635 6.635 16 C -0.453 4.453 17 S 1.424 4.576 18 O -0.904 6.904 19 C -0.476 4.476 20 C -0.019 4.019 21 C -0.125 4.125 22 C -0.011 4.011 23 Cl -0.062 7.062 24 C -0.137 4.137 25 C -0.065 4.065 26 H 0.092 0.908 27 H 0.054 0.946 28 H 0.035 0.965 29 H 0.070 0.930 30 H 0.024 0.976 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.273 0.727 34 H 0.161 0.839 35 H 0.091 0.909 36 H 0.191 0.809 37 H 0.170 0.830 38 H 0.142 0.858 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.782 -1.522 -11.563 12.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.313 6.313 3 C -0.016 4.016 4 C -0.021 4.021 5 N -0.146 5.146 6 C -0.467 4.467 7 H 0.105 0.895 8 C -0.181 4.181 9 N -0.521 5.521 10 Si 0.795 3.205 11 H -0.188 1.188 12 H -0.207 1.207 13 H -0.205 1.205 14 C 0.262 3.738 15 O -0.525 6.525 16 C -0.590 4.590 17 S 1.620 4.380 18 O -0.900 6.900 19 C -0.573 4.573 20 C -0.038 4.038 21 C -0.145 4.145 22 C -0.038 4.038 23 Cl -0.032 7.032 24 C -0.156 4.156 25 C -0.084 4.084 26 H 0.110 0.890 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.122 0.878 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.179 0.821 35 H 0.110 0.890 36 H 0.208 0.792 37 H 0.188 0.812 38 H 0.160 0.840 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.943 -0.284 -11.262 12.302 hybrid contribution -2.659 -2.014 -0.667 3.402 sum 2.284 -2.298 -11.928 12.360 Atomic orbital electron populations 1.22878 0.80929 1.03205 1.00194 1.88083 1.20189 1.27754 1.95272 1.22863 0.94894 0.84617 0.99230 1.21577 0.91182 0.98640 0.90693 1.43493 1.54963 1.06613 1.09487 1.19401 1.46239 0.80739 1.00363 0.89497 1.25832 0.93698 1.03160 0.95371 1.69879 1.30666 1.38375 1.13210 0.85346 0.78518 0.78647 0.77963 1.18784 1.20668 1.20476 1.20024 0.80673 0.86218 0.86883 1.90541 1.60673 1.15161 1.86166 1.27818 1.09903 1.16117 1.05165 1.69286 1.05558 0.81202 0.81924 1.92915 1.54399 1.61793 1.80895 1.28196 0.99937 1.13754 1.15395 1.21405 0.94778 0.91216 0.96368 1.21613 1.00132 0.99251 0.93474 1.21317 0.95200 0.96968 0.90270 1.98381 1.94849 1.72646 1.37371 1.21229 0.96221 0.99680 0.98513 1.21121 0.99048 0.94614 0.93649 0.88985 0.92710 0.94641 0.91218 0.95810 0.87781 0.91248 0.91676 0.82129 0.89031 0.79156 0.81218 0.83982 0.86918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.77 11.01 113.37 1.25 2.02 16 2 O -0.39 -16.93 10.18 -148.98 -1.52 -18.44 16 3 C 0.06 2.59 6.28 71.98 0.45 3.05 16 4 C 0.10 4.92 5.47 86.38 0.47 5.39 16 5 N -0.43 -21.33 2.52 -635.55 -1.60 -22.93 16 6 C -0.34 -16.81 8.11 84.04 0.68 -16.13 16 7 H 0.09 4.18 7.13 -2.91 -0.02 4.16 16 8 C 0.02 1.14 4.95 84.93 0.42 1.56 16 9 N -0.88 -44.83 11.35 21.66 0.25 -44.59 16 10 Si 0.97 39.48 29.61 68.60 2.03 41.51 16 11 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 12 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 13 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 14 C 0.47 22.41 7.64 87.66 0.67 23.08 16 15 O -0.63 -32.45 15.43 -3.07 -0.05 -32.50 16 16 C -0.45 -16.84 4.96 71.23 0.35 -16.49 16 17 S 1.42 44.43 12.69 -56.49 -0.72 43.72 16 18 O -0.90 -39.61 16.90 -148.98 -2.52 -42.13 16 19 C -0.48 -12.16 5.61 22.27 0.12 -12.03 16 20 C -0.02 -0.33 9.75 22.26 0.22 -0.11 16 21 C -0.13 -2.14 9.83 22.29 0.22 -1.92 16 22 C -0.01 -0.22 6.32 22.32 0.14 -0.08 16 23 Cl -0.06 -1.12 28.96 -2.72 -0.08 -1.20 16 24 C -0.14 -3.24 9.83 22.29 0.22 -3.02 16 25 C -0.06 -1.83 9.44 22.27 0.21 -1.62 16 26 H 0.09 2.61 8.14 -2.38 -0.02 2.59 16 27 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.10 5.30 5.38 -2.39 -0.01 5.28 16 32 H 0.07 3.31 7.36 -2.39 -0.02 3.29 16 33 H 0.27 13.12 8.31 -92.71 -0.77 12.35 16 34 H 0.16 5.11 7.92 -2.39 -0.02 5.09 16 35 H 0.09 3.56 7.96 -2.39 -0.02 3.54 16 36 H 0.19 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 38 H 0.14 2.93 8.06 -2.91 -0.02 2.90 16 39 H 0.11 3.62 7.45 -2.91 -0.02 3.60 16 Total: -1.00 -73.79 364.56 2.30 -71.49 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 1.07 Total: 21.38 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: 5.43 Total: -16.31 kcal Atomic # 7 Polarization: -66.16 SS G_CDS: -1.35 Total: -67.52 kcal Atomic # 8 Polarization: -88.99 SS G_CDS: -4.08 Total: -93.07 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Atomic # 16 Polarization: 44.43 SS G_CDS: -0.72 Total: 43.72 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.08 Total: -1.20 kcal Total: -73.79 2.30 -71.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909557634.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.703 kcal (2) G-P(sol) polarization free energy of solvation -73.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds