Wall clock time and date at job start Wed Apr 1 2020 03:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 110.99874 * 2 1 4 4 C 1.53005 * 109.46898 * 288.10513 * 3 2 1 5 5 H 1.08993 * 109.47372 * 59.99905 * 4 3 2 6 6 O 1.42900 * 109.46880 * 299.99943 * 4 3 2 7 7 C 1.50701 * 109.46942 * 180.02562 * 4 3 2 8 8 H 1.07999 * 120.00137 * 359.97438 * 7 4 3 9 9 C 1.37877 * 119.99637 * 179.72537 * 7 4 3 10 10 N 1.31517 * 119.99851 * 180.27085 * 9 7 4 11 11 Si 1.86800 * 120.00313 * 0.26968 * 9 7 4 12 12 H 1.48507 * 109.46867 * 89.99884 * 11 9 7 13 13 H 1.48496 * 109.47168 * 209.99997 * 11 9 7 14 14 H 1.48499 * 109.46989 * 330.00518 * 11 9 7 15 15 C 1.46903 * 110.99968 * 123.94855 * 2 1 3 16 16 H 1.08998 * 109.19858 * 181.66442 * 15 2 1 17 17 C 1.54268 * 109.21224 * 301.02814 * 15 2 1 18 18 S 1.83407 * 100.59369 * 148.06849 * 17 15 2 19 19 O 1.42094 * 111.49498 * 225.96835 * 18 17 15 20 20 O 1.42094 * 111.75379 * 85.67515 * 18 17 15 21 21 C 1.77614 * 97.18212 * 335.78717 * 18 17 15 22 22 C 1.37983 * 130.65107 * 195.10518 * 21 18 17 23 23 C 1.38180 * 120.24869 * 179.03758 * 22 21 18 24 24 C 1.38380 * 119.12309 * 359.96865 * 23 22 21 25 25 Cl 1.73598 * 119.79287 * 180.24018 * 24 23 22 26 26 C 1.37711 * 120.41269 * 0.22699 * 24 23 22 27 27 C 1.38269 * 107.83663 * 14.63642 * 21 18 17 28 28 H 1.09009 * 109.46834 * 66.82470 * 1 2 3 29 29 H 1.09001 * 109.47621 * 186.82347 * 1 2 3 30 30 H 1.09000 * 109.47648 * 306.82532 * 1 2 3 31 31 H 1.09000 * 109.46979 * 168.10617 * 3 2 1 32 32 H 1.08999 * 109.47465 * 48.10088 * 3 2 1 33 33 H 0.96692 * 114.00440 * 300.00370 * 6 4 3 34 34 H 0.96997 * 120.00227 * 179.97438 * 10 9 7 35 35 H 1.08993 * 111.19867 * 265.84570 * 17 15 2 36 36 H 1.08999 * 111.19914 * 30.20419 * 17 15 2 37 37 H 1.08004 * 119.87765 * 359.03526 * 22 21 18 38 38 H 1.07994 * 120.44268 * 179.97438 * 23 22 21 39 39 H 1.08001 * 119.47603 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7596 2.0082 -1.3711 5 1 0.6907 2.0293 -1.5830 6 8 2.4289 1.2410 -2.3740 7 6 2.3002 3.4149 -1.3714 8 1 2.7650 3.8149 -0.4824 9 6 2.2060 4.1894 -2.5081 10 7 2.6825 5.4152 -2.5100 11 14 1.4015 3.4978 -4.0456 12 1 -0.0528 3.7976 -4.0209 13 1 2.0146 4.1186 -5.2471 14 1 1.6029 2.0272 -4.0908 15 6 1.9954 -0.7659 1.1377 16 1 3.0845 -0.7220 1.1261 17 6 1.4763 -0.1453 2.4512 18 16 1.3601 -1.6401 3.5075 19 8 0.1283 -1.6835 4.2145 20 8 2.5988 -1.9380 4.1366 21 6 1.1966 -2.8267 2.1960 22 6 0.7897 -4.1449 2.2220 23 6 0.7228 -4.8760 1.0514 24 6 1.0681 -4.2681 -0.1429 25 17 0.9845 -5.1685 -1.6248 26 6 1.4774 -2.9534 -0.1632 27 6 1.5549 -2.2041 1.0145 28 1 -0.3633 0.4045 -0.9448 29 1 -0.3634 -1.0204 0.1221 30 1 -0.3634 0.6159 0.8226 31 1 3.0644 1.3503 0.2118 32 1 1.4849 1.9566 0.7649 33 1 3.3857 1.1793 -2.2487 34 1 2.6166 5.9600 -3.3098 35 1 2.1911 0.5695 2.8588 36 1 0.4984 0.3150 2.3101 37 1 0.5226 -4.6071 3.1609 38 1 0.4052 -5.9080 1.0681 39 1 1.7430 -2.4940 -1.1039 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930068961.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:18 Heat of formation + Delta-G solvation = -69.735844 kcal Electronic energy + Delta-G solvation = -26298.414593 eV Core-core repulsion = 22360.216400 eV Total energy + Delta-G solvation = -3938.198193 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.38423 -38.23083 -37.35575 -36.83775 -36.21401 -35.73565 -32.80703 -32.30595 -31.26021 -29.80178 -28.79620 -26.65211 -25.26446 -23.59676 -23.08213 -21.01498 -20.13678 -19.38349 -17.73805 -17.52293 -17.08188 -16.63217 -16.22342 -15.78204 -15.26698 -15.21715 -14.81547 -14.70135 -14.43351 -14.06751 -13.83976 -13.67028 -13.57830 -13.25494 -12.91109 -12.76289 -12.49413 -12.30395 -12.27463 -11.96223 -11.82443 -11.66681 -11.54192 -11.27816 -11.15446 -11.05228 -10.99120 -10.76137 -10.41497 -10.04503 -9.41618 -9.27449 -9.14257 -8.70355 -8.44763 -8.12368 -6.20557 -4.33043 -0.23963 0.30992 0.80483 1.68079 2.35858 2.94245 3.24880 3.33617 3.44251 3.66486 3.70313 3.77692 4.03917 4.29608 4.39235 4.47146 4.62393 4.71351 4.93926 5.03136 5.13335 5.15005 5.24861 5.32560 5.39996 5.55307 5.58486 5.69661 5.76874 5.79253 5.81942 6.05744 6.11454 6.27351 6.41581 6.92996 7.03290 7.29438 7.53696 8.20137 8.74769 9.00969 9.43909 10.89870 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.011797 B = 0.003875 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.910054 B = 7224.475111 C = 9152.417567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.509 5.509 3 C 0.035 3.965 4 C 0.204 3.796 5 H 0.053 0.947 6 O -0.570 6.570 7 C -0.569 4.569 8 H 0.071 0.929 9 C 0.085 3.915 10 N -0.892 5.892 11 Si 0.870 3.130 12 H -0.288 1.288 13 H -0.296 1.296 14 H -0.215 1.215 15 C 0.116 3.884 16 H 0.126 0.874 17 C -0.612 4.612 18 S 2.472 3.528 19 O -0.932 6.932 20 O -0.925 6.925 21 C -0.633 4.633 22 C 0.008 3.992 23 C -0.128 4.128 24 C 0.007 3.993 25 Cl -0.057 7.057 26 C -0.086 4.086 27 C -0.009 4.009 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.354 0.646 34 H 0.266 0.734 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.677 -19.523 8.624 21.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.231 5.231 3 C -0.091 4.091 4 C 0.146 3.854 5 H 0.071 0.929 6 O -0.375 6.375 7 C -0.607 4.607 8 H 0.089 0.911 9 C -0.119 4.119 10 N -0.528 5.528 11 Si 0.697 3.303 12 H -0.215 1.215 13 H -0.223 1.223 14 H -0.137 1.137 15 C 0.005 3.995 16 H 0.144 0.856 17 C -0.744 4.744 18 S 2.652 3.348 19 O -0.929 6.929 20 O -0.922 6.922 21 C -0.720 4.720 22 C -0.011 4.011 23 C -0.147 4.147 24 C -0.019 4.019 25 Cl -0.028 7.028 26 C -0.106 4.106 27 C -0.011 4.011 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.200 0.800 34 H 0.075 0.925 35 H 0.173 0.827 36 H 0.171 0.829 37 H 0.158 0.842 38 H 0.162 0.838 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.088 -19.881 8.685 22.077 hybrid contribution -0.153 0.430 -0.940 1.045 sum -4.242 -19.452 7.745 21.362 Atomic orbital electron populations 1.22604 0.87510 1.01243 1.02345 1.62270 1.07977 1.16201 1.36638 1.23027 0.99775 0.85053 1.01289 1.19683 0.93866 0.89189 0.82671 0.92899 1.86677 1.23034 1.75679 1.52144 1.21474 1.41857 0.96834 1.00526 0.91065 1.24971 0.93608 0.94085 0.99271 1.69950 1.44703 1.08637 1.29553 0.87041 0.78506 0.83327 0.81473 1.21518 1.22254 1.13708 1.21085 1.02111 0.88215 0.88053 0.85649 1.31126 1.13089 1.18030 1.12187 1.06538 0.75130 0.78161 0.75010 1.93601 1.43960 1.85627 1.69746 1.93647 1.43887 1.82456 1.72242 1.30549 1.14402 1.09803 1.17211 1.20127 0.92090 0.90540 0.98357 1.21242 1.01732 1.00983 0.90780 1.20963 1.00031 0.92914 0.88035 1.98406 1.96524 1.74277 1.33561 1.20947 0.98603 0.91395 0.99616 1.20336 0.93800 0.94225 0.92712 0.89867 0.91822 0.94973 0.90779 0.93849 0.80003 0.92497 0.82677 0.82896 0.84168 0.83755 0.82868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 8.55 60.06 0.51 0.65 16 2 N -0.51 -6.91 4.31 -235.34 -1.01 -7.93 16 3 C 0.04 0.58 4.06 -3.82 -0.02 0.56 16 4 C 0.20 4.27 2.30 -27.88 -0.06 4.21 16 5 H 0.05 1.16 6.34 -51.93 -0.33 0.83 16 6 O -0.57 -11.85 9.99 -35.23 -0.35 -12.21 16 7 C -0.57 -14.71 9.34 -34.44 -0.32 -15.03 16 8 H 0.07 1.99 7.99 -52.49 -0.42 1.57 16 9 C 0.09 2.35 5.47 -17.82 -0.10 2.25 16 10 N -0.89 -26.28 13.96 55.43 0.77 -25.50 16 11 Si 0.87 20.97 26.99 -169.99 -4.59 16.38 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 14 H -0.21 -5.04 5.30 56.52 0.30 -4.74 16 15 C 0.12 1.28 2.60 -68.09 -0.18 1.10 16 16 H 0.13 1.26 7.95 -51.93 -0.41 0.85 16 17 C -0.61 -5.68 6.10 37.82 0.23 -5.45 16 18 S 2.47 25.92 6.15 -107.50 -0.66 25.26 16 19 O -0.93 -12.12 18.01 -57.39 -1.03 -13.15 16 20 O -0.93 -12.09 18.01 -57.39 -1.03 -13.13 16 21 C -0.63 -6.71 6.16 -39.66 -0.24 -6.95 16 22 C 0.01 0.07 10.02 -39.70 -0.40 -0.32 16 23 C -0.13 -1.14 9.87 -39.55 -0.39 -1.53 16 24 C 0.01 0.08 6.29 -39.72 -0.25 -0.17 16 25 Cl -0.06 -0.56 28.94 -51.86 -1.50 -2.06 16 26 C -0.09 -0.96 8.96 -39.19 -0.35 -1.32 16 27 C -0.01 -0.10 4.31 -103.92 -0.45 -0.54 16 28 H 0.08 1.19 6.99 -51.92 -0.36 0.83 16 29 H 0.06 0.74 6.50 -51.93 -0.34 0.40 16 30 H 0.03 0.38 6.19 -51.93 -0.32 0.06 16 31 H 0.07 1.17 7.87 -51.93 -0.41 0.76 16 32 H 0.04 0.70 7.58 -51.93 -0.39 0.30 16 33 H 0.35 6.56 9.04 45.56 0.41 6.97 16 34 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.16 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.15 1.35 5.77 -51.93 -0.30 1.05 16 37 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 38 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.15 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 342.76 15.07 5.17 5.17 Total: -1.00 -33.98 342.76 -10.06 -44.04 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -3.80 Total: 5.66 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -2.01 Total: -22.54 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: -0.24 Total: -33.43 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -2.42 Total: -38.48 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.59 Total: 16.38 kcal Atomic # 16 Polarization: 25.92 SS G_CDS: -0.66 Total: 25.26 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.98 -10.06 -44.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930068961.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.691 kcal (2) G-P(sol) polarization free energy of solvation -33.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds