Wall clock time and date at job start Wed Apr 1 2020 03:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 110.99874 * 2 1 4 4 C 1.53005 * 109.46898 * 288.10513 * 3 2 1 5 5 H 1.08993 * 109.47372 * 59.99905 * 4 3 2 6 6 O 1.42900 * 109.46880 * 299.99943 * 4 3 2 7 7 C 1.50701 * 109.46942 * 180.02562 * 4 3 2 8 8 H 1.07999 * 120.00137 * 359.97438 * 7 4 3 9 9 C 1.37877 * 119.99637 * 179.72537 * 7 4 3 10 10 N 1.31517 * 119.99851 * 180.27085 * 9 7 4 11 11 Si 1.86800 * 120.00313 * 0.26968 * 9 7 4 12 12 H 1.48507 * 109.46867 * 89.99884 * 11 9 7 13 13 H 1.48496 * 109.47168 * 209.99997 * 11 9 7 14 14 H 1.48499 * 109.46989 * 330.00518 * 11 9 7 15 15 C 1.46903 * 110.99968 * 123.94855 * 2 1 3 16 16 H 1.08998 * 109.19858 * 181.66442 * 15 2 1 17 17 C 1.54268 * 109.21224 * 301.02814 * 15 2 1 18 18 S 1.83407 * 100.59369 * 148.06849 * 17 15 2 19 19 O 1.42094 * 111.49498 * 225.96835 * 18 17 15 20 20 O 1.42094 * 111.75379 * 85.67515 * 18 17 15 21 21 C 1.77614 * 97.18212 * 335.78717 * 18 17 15 22 22 C 1.37983 * 130.65107 * 195.10518 * 21 18 17 23 23 C 1.38180 * 120.24869 * 179.03758 * 22 21 18 24 24 C 1.38380 * 119.12309 * 359.96865 * 23 22 21 25 25 Cl 1.73598 * 119.79287 * 180.24018 * 24 23 22 26 26 C 1.37711 * 120.41269 * 0.22699 * 24 23 22 27 27 C 1.38269 * 107.83663 * 14.63642 * 21 18 17 28 28 H 1.09009 * 109.46834 * 66.82470 * 1 2 3 29 29 H 1.09001 * 109.47621 * 186.82347 * 1 2 3 30 30 H 1.09000 * 109.47648 * 306.82532 * 1 2 3 31 31 H 1.09000 * 109.46979 * 168.10617 * 3 2 1 32 32 H 1.08999 * 109.47465 * 48.10088 * 3 2 1 33 33 H 0.96692 * 114.00440 * 300.00370 * 6 4 3 34 34 H 0.96997 * 120.00227 * 179.97438 * 10 9 7 35 35 H 1.08993 * 111.19867 * 265.84570 * 17 15 2 36 36 H 1.08999 * 111.19914 * 30.20419 * 17 15 2 37 37 H 1.08004 * 119.87765 * 359.03526 * 22 21 18 38 38 H 1.07994 * 120.44268 * 179.97438 * 23 22 21 39 39 H 1.08001 * 119.47603 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7596 2.0082 -1.3711 5 1 0.6907 2.0293 -1.5830 6 8 2.4289 1.2410 -2.3740 7 6 2.3002 3.4149 -1.3714 8 1 2.7650 3.8149 -0.4824 9 6 2.2060 4.1894 -2.5081 10 7 2.6825 5.4152 -2.5100 11 14 1.4015 3.4978 -4.0456 12 1 -0.0528 3.7976 -4.0209 13 1 2.0146 4.1186 -5.2471 14 1 1.6029 2.0272 -4.0908 15 6 1.9954 -0.7659 1.1377 16 1 3.0845 -0.7220 1.1261 17 6 1.4763 -0.1453 2.4512 18 16 1.3601 -1.6401 3.5075 19 8 0.1283 -1.6835 4.2145 20 8 2.5988 -1.9380 4.1366 21 6 1.1966 -2.8267 2.1960 22 6 0.7897 -4.1449 2.2220 23 6 0.7228 -4.8760 1.0514 24 6 1.0681 -4.2681 -0.1429 25 17 0.9845 -5.1685 -1.6248 26 6 1.4774 -2.9534 -0.1632 27 6 1.5549 -2.2041 1.0145 28 1 -0.3633 0.4045 -0.9448 29 1 -0.3634 -1.0204 0.1221 30 1 -0.3634 0.6159 0.8226 31 1 3.0644 1.3503 0.2118 32 1 1.4849 1.9566 0.7649 33 1 3.3857 1.1793 -2.2487 34 1 2.6166 5.9600 -3.3098 35 1 2.1911 0.5695 2.8588 36 1 0.4984 0.3150 2.3101 37 1 0.5226 -4.6071 3.1609 38 1 0.4052 -5.9080 1.0681 39 1 1.7430 -2.4940 -1.1039 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930068961.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:17 Heat of formation + Delta-G solvation = -96.879143 kcal Electronic energy + Delta-G solvation = -26299.591615 eV Core-core repulsion = 22360.216400 eV Total energy + Delta-G solvation = -3939.375215 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.063 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.22967 -39.27248 -38.28454 -37.75457 -37.21991 -37.03131 -34.36649 -33.79608 -32.03749 -30.71395 -30.24781 -27.87832 -26.55573 -24.43289 -24.16415 -22.25430 -21.35191 -20.23371 -19.33155 -18.55500 -17.97412 -17.56341 -17.03865 -16.84247 -16.64899 -16.41972 -16.29974 -15.93278 -15.41241 -15.11908 -14.90834 -14.81790 -14.63671 -14.47751 -14.10376 -13.85891 -13.49327 -13.42803 -13.24175 -13.13624 -12.91214 -12.80686 -12.76001 -12.49431 -12.45583 -12.30544 -12.02257 -11.96933 -11.76032 -11.54624 -11.01632 -10.77651 -10.19747 -10.12624 -10.01455 -9.29656 -8.32537 -6.46133 -1.06449 -0.47317 0.04056 0.91935 1.40999 1.48319 1.55394 1.77772 2.17223 2.42314 2.45824 2.74014 2.89751 3.07234 3.21972 3.47852 3.61970 3.88119 3.96085 4.15323 4.16791 4.20360 4.27289 4.38039 4.44890 4.54118 4.59625 4.67475 4.78003 4.83637 4.92129 5.01748 5.05097 5.07582 5.47473 5.49190 5.54070 5.98809 6.00658 6.12909 6.67770 7.27957 7.44348 8.81427 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.011797 B = 0.003875 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.910054 B = 7224.475111 C = 9152.417567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.513 5.513 3 C 0.047 3.953 4 C 0.209 3.791 5 H 0.048 0.952 6 O -0.574 6.574 7 C -0.562 4.562 8 H 0.041 0.959 9 C 0.030 3.970 10 N -0.941 5.941 11 Si 0.933 3.067 12 H -0.289 1.289 13 H -0.303 1.303 14 H -0.202 1.202 15 C 0.114 3.886 16 H 0.137 0.863 17 C -0.602 4.602 18 S 2.493 3.507 19 O -0.959 6.959 20 O -0.953 6.953 21 C -0.638 4.638 22 C 0.001 3.999 23 C -0.121 4.121 24 C 0.001 3.999 25 Cl -0.055 7.055 26 C -0.097 4.097 27 C -0.015 4.015 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.366 0.634 34 H 0.265 0.735 35 H 0.178 0.822 36 H 0.162 0.838 37 H 0.164 0.836 38 H 0.172 0.828 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.331 -21.680 8.991 23.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 N -0.235 5.235 3 C -0.080 4.080 4 C 0.150 3.850 5 H 0.065 0.935 6 O -0.380 6.380 7 C -0.601 4.601 8 H 0.060 0.940 9 C -0.169 4.169 10 N -0.581 5.581 11 Si 0.758 3.242 12 H -0.216 1.216 13 H -0.230 1.230 14 H -0.124 1.124 15 C 0.004 3.996 16 H 0.154 0.846 17 C -0.735 4.735 18 S 2.675 3.325 19 O -0.956 6.956 20 O -0.950 6.950 21 C -0.726 4.726 22 C -0.018 4.018 23 C -0.140 4.140 24 C -0.025 4.025 25 Cl -0.026 7.026 26 C -0.117 4.117 27 C -0.017 4.017 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.213 0.787 34 H 0.074 0.926 35 H 0.195 0.805 36 H 0.179 0.821 37 H 0.182 0.818 38 H 0.189 0.811 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.742 -22.072 9.082 24.334 hybrid contribution 0.071 1.044 -1.020 1.461 sum -4.672 -21.028 8.062 23.000 Atomic orbital electron populations 1.22641 0.87131 1.02287 1.02007 1.62087 1.08411 1.14508 1.38516 1.22672 1.00499 0.86526 0.98300 1.19501 0.93098 0.86983 0.85402 0.93458 1.86606 1.24065 1.75088 1.52274 1.21883 1.40117 0.99141 0.98910 0.94037 1.25782 0.94472 0.94280 1.02406 1.70080 1.47325 1.10267 1.30387 0.86088 0.77250 0.83087 0.77795 1.21558 1.23029 1.12371 1.21163 1.02800 0.87978 0.87686 0.84563 1.31133 1.14212 1.17592 1.10573 1.05797 0.73806 0.78180 0.74687 1.93564 1.44881 1.86176 1.70956 1.93609 1.44861 1.83135 1.73401 1.30549 1.14931 1.10446 1.16651 1.20546 0.91344 0.90216 0.99658 1.21562 1.00449 1.02112 0.89918 1.21096 1.00058 0.92760 0.88636 1.98408 1.96504 1.74109 1.33607 1.20930 0.99457 0.91995 0.99324 1.20267 0.94474 0.94147 0.92853 0.91495 0.90486 0.93702 0.90102 0.93503 0.78731 0.92642 0.80450 0.82070 0.81833 0.81095 0.83807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 8.55 127.69 1.09 1.26 16 2 N -0.51 -12.86 4.31 -898.48 -3.87 -16.74 16 3 C 0.05 1.46 4.06 86.30 0.35 1.81 16 4 C 0.21 8.46 2.30 29.85 0.07 8.53 16 5 H 0.05 2.01 6.34 -2.39 -0.02 1.99 16 6 O -0.57 -22.77 9.99 -148.98 -1.49 -24.26 16 7 C -0.56 -29.08 9.34 25.60 0.24 -28.84 16 8 H 0.04 2.35 7.99 -2.91 -0.02 2.32 16 9 C 0.03 1.67 5.47 84.65 0.46 2.13 16 10 N -0.94 -56.57 13.96 21.45 0.30 -56.27 16 11 Si 0.93 43.48 26.99 68.60 1.85 45.33 16 12 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 13 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 14 H -0.20 -8.91 5.30 99.48 0.53 -8.39 16 15 C 0.11 2.25 2.60 44.67 0.12 2.36 16 16 H 0.14 2.40 7.95 -2.39 -0.02 2.38 16 17 C -0.60 -9.68 6.10 72.41 0.44 -9.24 16 18 S 2.49 47.86 6.15 -56.49 -0.35 47.51 16 19 O -0.96 -23.43 18.01 -127.80 -2.30 -25.73 16 20 O -0.95 -23.55 18.01 -127.80 -2.30 -25.86 16 21 C -0.64 -12.16 6.16 22.22 0.14 -12.03 16 22 C 0.00 0.02 10.02 22.20 0.22 0.24 16 23 C -0.12 -1.82 9.87 22.29 0.22 -1.60 16 24 C 0.00 0.02 6.29 22.18 0.14 0.16 16 25 Cl -0.06 -0.99 28.94 -2.72 -0.08 -1.07 16 26 C -0.10 -2.02 8.96 22.52 0.20 -1.81 16 27 C -0.02 -0.31 4.31 -19.41 -0.08 -0.39 16 28 H 0.07 1.82 6.99 -2.38 -0.02 1.80 16 29 H 0.08 1.62 6.50 -2.39 -0.02 1.61 16 30 H 0.04 0.95 6.19 -2.39 -0.01 0.93 16 31 H 0.08 2.38 7.87 -2.39 -0.02 2.36 16 32 H 0.05 1.41 7.58 -2.39 -0.02 1.39 16 33 H 0.37 12.85 9.04 -74.06 -0.67 12.18 16 34 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 35 H 0.18 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.16 2.41 5.77 -2.39 -0.01 2.40 16 37 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 38 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 39 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -72.54 342.76 -4.38 -76.92 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.26 Total: 17.57 kcal Atomic # 6 Polarization: -41.02 SS G_CDS: 3.61 Total: -37.41 kcal Atomic # 7 Polarization: -69.43 SS G_CDS: -3.58 Total: -73.01 kcal Atomic # 8 Polarization: -69.75 SS G_CDS: -6.09 Total: -75.85 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.85 Total: 45.33 kcal Atomic # 16 Polarization: 47.86 SS G_CDS: -0.35 Total: 47.51 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.07 kcal Total: -72.54 -4.38 -76.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930068961.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.962 kcal (2) G-P(sol) polarization free energy of solvation -72.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds