Wall clock time and date at job start Wed Apr 1 2020 03:09:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46900 * 1
3 3 C 1.46900 * 111.00225 * 2 1
4 4 C 1.52997 * 109.47617 * 73.60608 * 3 2 1
5 5 H 1.09000 * 109.47340 * 53.41949 * 4 3 2
6 6 O 1.42906 * 109.46676 * 293.42697 * 4 3 2
7 7 C 1.50690 * 109.47414 * 173.42420 * 4 3 2
8 8 H 1.08003 * 120.00313 * 359.97438 * 7 4 3
9 9 C 1.37877 * 120.00265 * 180.02562 * 7 4 3
10 10 N 1.31512 * 120.00517 * 180.02562 * 9 7 4
11 11 Si 1.86797 * 119.99784 * 359.97438 * 9 7 4
12 12 H 1.48506 * 109.47055 * 90.00226 * 11 9 7
13 13 H 1.48506 * 109.47361 * 210.00314 * 11 9 7
14 14 H 1.48501 * 109.47231 * 330.00464 * 11 9 7
15 15 C 1.46901 * 111.00276 * 236.04163 * 2 1 3
16 16 H 1.09001 * 109.13061 * 60.25913 * 15 2 1
17 17 C 1.54280 * 109.21767 * 300.93051 * 15 2 1
18 18 S 1.83524 * 100.53245 * 267.43998 * 17 15 2
19 19 O 1.42101 * 111.52965 * 226.06551 * 18 17 15
20 20 O 1.42094 * 111.53637 * 85.75648 * 18 17 15
21 21 C 1.77613 * 97.22147 * 335.90879 * 18 17 15
22 22 C 1.37989 * 130.64123 * 194.76426 * 21 18 17
23 23 C 1.38188 * 120.23895 * 179.10497 * 22 21 18
24 24 C 1.38374 * 119.12820 * 359.97438 * 23 22 21
25 25 Cl 1.73593 * 119.78905 * 180.50792 * 24 23 22
26 26 C 1.37712 * 120.41398 * 0.23059 * 24 23 22
27 27 C 1.38278 * 107.84557 * 14.37248 * 21 18 17
28 28 H 1.08991 * 109.47216 * 185.89069 * 1 2 3
29 29 H 1.08999 * 109.47106 * 305.89341 * 1 2 3
30 30 H 1.09001 * 109.46485 * 65.88471 * 1 2 3
31 31 H 1.09001 * 109.46811 * 193.60721 * 3 2 1
32 32 H 1.09000 * 109.46934 * 313.60484 * 3 2 1
33 33 H 0.96705 * 113.99503 * 299.99092 * 6 4 3
34 34 H 0.96993 * 120.00393 * 180.02562 * 10 9 7
35 35 H 1.08998 * 111.20048 * 149.61287 * 17 15 2
36 36 H 1.09004 * 111.23958 * 25.27558 * 17 15 2
37 37 H 1.07991 * 119.88166 * 359.10305 * 22 21 18
38 38 H 1.07997 * 120.43329 * 180.02562 * 23 22 21
39 39 H 1.08003 * 119.47460 * 180.02562 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.7983 1.9935 1.3838
5 1 2.2298 1.3392 2.1412
6 8 0.4016 2.1589 1.6369
7 6 2.4801 3.3365 1.4326
8 1 3.0023 3.7090 0.5637
9 6 2.4382 4.0894 2.5869
10 7 3.0328 5.2616 2.6295
11 14 1.5356 3.4450 4.0900
12 1 2.4737 2.6598 4.9319
13 1 1.0033 4.5874 4.8755
14 1 0.4121 2.5753 3.6578
15 6 1.9955 -0.7661 -1.1375
16 1 1.6466 -0.3130 -2.0655
17 6 1.4785 -2.2173 -1.0553
18 16 2.8495 -3.0099 -0.1278
19 8 3.2371 -4.2415 -0.7213
20 8 2.6796 -2.8690 1.2759
21 6 4.1190 -1.8494 -0.5710
22 6 5.4919 -1.9341 -0.4618
23 6 6.2902 -0.8936 -0.8974
24 6 5.6943 0.2297 -1.4431
25 17 6.6812 1.5413 -2.0079
26 6 4.3234 0.3112 -1.5461
27 6 3.5039 -0.7316 -1.1042
28 1 -0.3633 -1.0221 0.1055
29 1 -0.3633 0.6025 0.8325
30 1 -0.3632 0.4199 -0.9380
31 1 3.0582 1.3526 -0.2418
32 1 1.4640 1.9646 -0.7442
33 1 -0.0485 2.7308 1.0002
34 1 3.0036 5.7911 3.4416
35 1 1.3699 -2.6539 -2.0481
36 1 0.5427 -2.2722 -0.4990
37 1 5.9443 -2.8166 -0.0343
38 1 7.3651 -0.9567 -0.8138
39 1 3.8743 1.1949 -1.9748
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000930069050.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:09:21
Heat of formation + Delta-G solvation = -61.322292 kcal
Electronic energy + Delta-G solvation = -26870.920505 eV
Core-core repulsion = 22933.087151 eV
Total energy + Delta-G solvation = -3937.833354 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 345.063 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-40.29238 -38.05950 -37.10142 -36.67848 -35.99698 -35.71769 -32.68340 -32.29021
-31.26837 -30.23854 -28.58938 -26.40190 -24.69906 -23.52607 -22.90726 -21.02755
-20.40863 -19.17096 -17.62720 -17.39706 -16.95902 -16.47932 -16.28849 -15.57676
-15.22605 -15.13421 -14.87522 -14.61437 -14.43229 -13.75772 -13.71271 -13.56754
-13.30257 -12.91481 -12.78227 -12.71431 -12.47301 -12.19176 -12.03342 -11.95554
-11.83803 -11.67216 -11.25923 -11.09146 -11.04028 -10.91175 -10.75298 -10.52121
-10.36220 -10.05237 -9.21873 -9.20586 -9.01888 -8.65446 -8.40102 -8.00869
-6.15294 -4.27371 -0.02551 0.50941 0.92529 1.86586 2.54614 3.08513
3.40562 3.41407 3.50413 3.75253 3.79183 3.96634 4.10156 4.42201
4.52852 4.53787 4.77925 4.97598 4.97828 5.09418 5.17082 5.19801
5.35224 5.49821 5.53574 5.61616 5.63183 5.71049 5.81523 5.89394
5.92215 6.06934 6.38494 6.40584 6.62670 6.99285 7.13246 7.43959
7.60343 8.23038 8.77426 8.94094 9.49060 10.94915
Molecular weight = 345.06amu
Principal moments of inertia in cm(-1)
A = 0.009704 B = 0.005223 C = 0.003915
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2884.763151 B = 5359.355989 C = 7150.992941
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.002 3.998
2 N -0.528 5.528
3 C 0.027 3.973
4 C 0.202 3.798
5 H 0.067 0.933
6 O -0.575 6.575
7 C -0.564 4.564
8 H 0.071 0.929
9 C 0.086 3.914
10 N -0.891 5.891
11 Si 0.871 3.129
12 H -0.286 1.286
13 H -0.297 1.297
14 H -0.216 1.216
15 C 0.111 3.889
16 H 0.079 0.921
17 C -0.573 4.573
18 S 2.475 3.525
19 O -0.940 6.940
20 O -0.906 6.906
21 C -0.618 4.618
22 C 0.008 3.992
23 C -0.123 4.123
24 C 0.014 3.986
25 Cl -0.053 7.053
26 C -0.101 4.101
27 C -0.011 4.011
28 H 0.058 0.942
29 H 0.118 0.882
30 H 0.021 0.979
31 H 0.085 0.915
32 H 0.035 0.965
33 H 0.352 0.648
34 H 0.265 0.735
35 H 0.147 0.853
36 H 0.158 0.842
37 H 0.142 0.858
38 H 0.146 0.854
39 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.244 -14.582 -11.909 18.829
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 N -0.253 5.253
3 C -0.100 4.100
4 C 0.145 3.855
5 H 0.085 0.915
6 O -0.381 6.381
7 C -0.602 4.602
8 H 0.089 0.911
9 C -0.119 4.119
10 N -0.528 5.528
11 Si 0.697 3.303
12 H -0.213 1.213
13 H -0.224 1.224
14 H -0.138 1.138
15 C 0.002 3.998
16 H 0.097 0.903
17 C -0.704 4.704
18 S 2.654 3.346
19 O -0.937 6.937
20 O -0.903 6.903
21 C -0.704 4.704
22 C -0.011 4.011
23 C -0.143 4.143
24 C -0.013 4.013
25 Cl -0.024 7.024
26 C -0.121 4.121
27 C -0.013 4.013
28 H 0.077 0.923
29 H 0.136 0.864
30 H 0.040 0.960
31 H 0.103 0.897
32 H 0.054 0.946
33 H 0.198 0.802
34 H 0.074 0.926
35 H 0.165 0.835
36 H 0.176 0.824
37 H 0.159 0.841
38 H 0.164 0.836
39 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges 0.708 -15.729 -10.375 18.856
hybrid contribution -0.350 1.819 -1.055 2.132
sum 0.357 -13.910 -11.430 18.007
Atomic orbital electron populations
1.23019 0.86066 1.02336 1.03039 1.62310 1.09027 1.16185 1.37790
1.23197 1.00548 0.85054 1.01171 1.19785 0.79500 0.95240 0.91007
0.91509 1.86677 1.24448 1.70688 1.56253 1.21406 1.36149 1.01980
1.00675 0.91113 1.24966 0.93684 0.94149 0.99081 1.69947 1.42569
1.11731 1.28563 0.87026 0.82635 0.79301 0.81328 1.21261 1.22401
1.13833 1.20666 0.88747 0.93084 0.97322 0.90321 1.30539 1.18065
1.06192 1.15586 1.06496 0.77575 0.74296 0.76207 1.93590 1.80858
1.40246 1.79019 1.93683 1.84768 1.85842 1.25999 1.30528 1.09682
1.16200 1.14029 1.20156 0.90224 0.97678 0.93008 1.21246 1.01022
0.92333 0.99709 1.20855 0.91733 0.90342 0.98381 1.98411 1.69497
1.47248 1.87240 1.20867 0.91361 0.98932 1.00892 1.20202 0.93913
0.93219 0.93955 0.92316 0.86403 0.96004 0.89713 0.94627 0.80153
0.92550 0.83513 0.82419 0.84074 0.83600 0.84015
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.00 0.03 8.98 60.06 0.54 0.57 16
2 N -0.53 -8.10 4.57 -235.34 -1.08 -9.17 16
3 C 0.03 0.48 4.44 -3.83 -0.02 0.47 16
4 C 0.20 4.52 2.51 -27.89 -0.07 4.45 16
5 H 0.07 1.65 7.57 -51.93 -0.39 1.26 16
6 O -0.57 -11.92 7.11 -35.23 -0.25 -12.17 16
7 C -0.56 -15.10 9.34 -34.44 -0.32 -15.42 16
8 H 0.07 2.03 7.99 -52.48 -0.42 1.61 16
9 C 0.09 2.43 5.47 -17.82 -0.10 2.33 16
10 N -0.89 -26.78 13.96 55.43 0.77 -26.01 16
11 Si 0.87 21.73 26.99 -169.99 -4.59 17.14 16
12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16
13 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16
14 H -0.22 -5.19 5.31 56.52 0.30 -4.89 16
15 C 0.11 1.34 2.35 -68.09 -0.16 1.18 16
16 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16
17 C -0.57 -5.30 7.08 37.83 0.27 -5.03 16
18 S 2.48 30.99 6.15 -107.50 -0.66 30.32 16
19 O -0.94 -13.02 18.01 -57.36 -1.03 -14.06 16
20 O -0.91 -14.90 18.01 -57.36 -1.03 -15.93 16
21 C -0.62 -8.18 6.16 -39.66 -0.24 -8.43 16
22 C 0.01 0.10 10.02 -39.69 -0.40 -0.30 16
23 C -0.12 -1.44 9.87 -39.55 -0.39 -1.83 16
24 C 0.01 0.18 6.29 -39.72 -0.25 -0.07 16
25 Cl -0.05 -0.68 28.94 -51.86 -1.50 -2.18 16
26 C -0.10 -1.37 7.58 -39.19 -0.30 -1.66 16
27 C -0.01 -0.14 4.85 -103.92 -0.50 -0.65 16
28 H 0.06 0.64 5.93 -51.93 -0.31 0.33 16
29 H 0.12 1.80 5.09 -51.93 -0.26 1.54 16
30 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16
31 H 0.08 1.55 4.24 -51.93 -0.22 1.33 16
32 H 0.04 0.61 8.03 -51.93 -0.42 0.19 16
33 H 0.35 6.36 9.04 45.56 0.41 6.77 16
34 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16
35 H 0.15 0.85 8.14 -51.93 -0.42 0.42 16
36 H 0.16 1.27 5.63 -51.93 -0.29 0.97 16
37 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16
38 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16
39 H 0.14 1.83 7.50 -52.48 -0.39 1.44 16
LS Contribution 338.07 15.07 5.09 5.09
Total: -1.00 -35.26 338.07 -9.86 -45.13
By element:
Atomic # 1 Polarization: 9.85 SS G_CDS: -3.65 Total: 6.21 kcal
Atomic # 6 Polarization: -22.44 SS G_CDS: -1.94 Total: -24.38 kcal
Atomic # 7 Polarization: -34.88 SS G_CDS: -0.30 Total: -35.18 kcal
Atomic # 8 Polarization: -39.84 SS G_CDS: -2.32 Total: -42.16 kcal
Atomic # 14 Polarization: 21.73 SS G_CDS: -4.59 Total: 17.14 kcal
Atomic # 16 Polarization: 30.99 SS G_CDS: -0.66 Total: 30.32 kcal
Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal
Total LS contribution 5.09 Total: 5.09 kcal
Total: -35.26 -9.86 -45.13 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000930069050.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -16.195 kcal
(2) G-P(sol) polarization free energy of solvation -35.265 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.459 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.128 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.322 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds