Wall clock time and date at job start Wed Apr 1 2020 03:09:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46900 * 1
3 3 C 1.46900 * 111.00225 * 2 1
4 4 C 1.52997 * 109.47617 * 73.60608 * 3 2 1
5 5 H 1.09000 * 109.47340 * 53.41949 * 4 3 2
6 6 O 1.42906 * 109.46676 * 293.42697 * 4 3 2
7 7 C 1.50690 * 109.47414 * 173.42420 * 4 3 2
8 8 H 1.08003 * 120.00313 * 359.97438 * 7 4 3
9 9 C 1.37877 * 120.00265 * 180.02562 * 7 4 3
10 10 N 1.31512 * 120.00517 * 180.02562 * 9 7 4
11 11 Si 1.86797 * 119.99784 * 359.97438 * 9 7 4
12 12 H 1.48506 * 109.47055 * 90.00226 * 11 9 7
13 13 H 1.48506 * 109.47361 * 210.00314 * 11 9 7
14 14 H 1.48501 * 109.47231 * 330.00464 * 11 9 7
15 15 C 1.46901 * 111.00276 * 236.04163 * 2 1 3
16 16 H 1.09001 * 109.13061 * 60.25913 * 15 2 1
17 17 C 1.54280 * 109.21767 * 300.93051 * 15 2 1
18 18 S 1.83524 * 100.53245 * 267.43998 * 17 15 2
19 19 O 1.42101 * 111.52965 * 226.06551 * 18 17 15
20 20 O 1.42094 * 111.53637 * 85.75648 * 18 17 15
21 21 C 1.77613 * 97.22147 * 335.90879 * 18 17 15
22 22 C 1.37989 * 130.64123 * 194.76426 * 21 18 17
23 23 C 1.38188 * 120.23895 * 179.10497 * 22 21 18
24 24 C 1.38374 * 119.12820 * 359.97438 * 23 22 21
25 25 Cl 1.73593 * 119.78905 * 180.50792 * 24 23 22
26 26 C 1.37712 * 120.41398 * 0.23059 * 24 23 22
27 27 C 1.38278 * 107.84557 * 14.37248 * 21 18 17
28 28 H 1.08991 * 109.47216 * 185.89069 * 1 2 3
29 29 H 1.08999 * 109.47106 * 305.89341 * 1 2 3
30 30 H 1.09001 * 109.46485 * 65.88471 * 1 2 3
31 31 H 1.09001 * 109.46811 * 193.60721 * 3 2 1
32 32 H 1.09000 * 109.46934 * 313.60484 * 3 2 1
33 33 H 0.96705 * 113.99503 * 299.99092 * 6 4 3
34 34 H 0.96993 * 120.00393 * 180.02562 * 10 9 7
35 35 H 1.08998 * 111.20048 * 149.61287 * 17 15 2
36 36 H 1.09004 * 111.23958 * 25.27558 * 17 15 2
37 37 H 1.07991 * 119.88166 * 359.10305 * 22 21 18
38 38 H 1.07997 * 120.43329 * 180.02562 * 23 22 21
39 39 H 1.08003 * 119.47460 * 180.02562 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.7983 1.9935 1.3838
5 1 2.2298 1.3392 2.1412
6 8 0.4016 2.1589 1.6369
7 6 2.4801 3.3365 1.4326
8 1 3.0023 3.7090 0.5637
9 6 2.4382 4.0894 2.5869
10 7 3.0328 5.2616 2.6295
11 14 1.5356 3.4450 4.0900
12 1 2.4737 2.6598 4.9319
13 1 1.0033 4.5874 4.8755
14 1 0.4121 2.5753 3.6578
15 6 1.9955 -0.7661 -1.1375
16 1 1.6466 -0.3130 -2.0655
17 6 1.4785 -2.2173 -1.0553
18 16 2.8495 -3.0099 -0.1278
19 8 3.2371 -4.2415 -0.7213
20 8 2.6796 -2.8690 1.2759
21 6 4.1190 -1.8494 -0.5710
22 6 5.4919 -1.9341 -0.4618
23 6 6.2902 -0.8936 -0.8974
24 6 5.6943 0.2297 -1.4431
25 17 6.6812 1.5413 -2.0079
26 6 4.3234 0.3112 -1.5461
27 6 3.5039 -0.7316 -1.1042
28 1 -0.3633 -1.0221 0.1055
29 1 -0.3633 0.6025 0.8325
30 1 -0.3632 0.4199 -0.9380
31 1 3.0582 1.3526 -0.2418
32 1 1.4640 1.9646 -0.7442
33 1 -0.0485 2.7308 1.0002
34 1 3.0036 5.7911 3.4416
35 1 1.3699 -2.6539 -2.0481
36 1 0.5427 -2.2722 -0.4990
37 1 5.9443 -2.8166 -0.0343
38 1 7.3651 -0.9567 -0.8138
39 1 3.8743 1.1949 -1.9748
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000930069050.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:09:20
Heat of formation + Delta-G solvation = -90.189463 kcal
Electronic energy + Delta-G solvation = -26872.172280 eV
Core-core repulsion = 22933.087151 eV
Total energy + Delta-G solvation = -3939.085129 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 345.063 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.28620 -39.24443 -38.15953 -37.80939 -37.17696 -36.94606 -34.43938 -33.74514
-32.24608 -31.38926 -30.00476 -27.64439 -26.16024 -24.48751 -23.99492 -22.44284
-21.70793 -20.15093 -19.37106 -18.49058 -17.90952 -17.61222 -17.27887 -16.81697
-16.71274 -16.46255 -16.16514 -16.09988 -15.53292 -15.15745 -14.87225 -14.67394
-14.55197 -14.29930 -13.95991 -13.72984 -13.58911 -13.37191 -13.22330 -13.09609
-12.96343 -12.92435 -12.72860 -12.58105 -12.40680 -12.17579 -11.93757 -11.87540
-11.85480 -11.42542 -11.07613 -10.79947 -10.21157 -10.12489 -10.01288 -9.22138
-8.34362 -6.47704 -0.93828 -0.46942 -0.03786 0.87570 1.40708 1.46058
1.60860 1.74841 2.11488 2.44207 2.48962 2.82672 3.04242 3.05106
3.20249 3.51225 3.57558 3.88433 4.03998 4.11733 4.14696 4.22326
4.28075 4.37328 4.44714 4.55377 4.62646 4.66253 4.71863 4.82696
4.88177 4.95662 5.03319 5.34104 5.46422 5.48086 5.59362 6.02302
6.04784 6.15421 6.64765 7.21204 7.36527 8.79390
Molecular weight = 345.06amu
Principal moments of inertia in cm(-1)
A = 0.009704 B = 0.005223 C = 0.003915
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2884.763151 B = 5359.355989 C = 7150.992941
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.002 4.002
2 N -0.547 5.547
3 C 0.040 3.960
4 C 0.211 3.789
5 H 0.043 0.957
6 O -0.572 6.572
7 C -0.558 4.558
8 H 0.040 0.960
9 C 0.032 3.968
10 N -0.938 5.938
11 Si 0.930 3.070
12 H -0.296 1.296
13 H -0.298 1.298
14 H -0.198 1.198
15 C 0.107 3.893
16 H 0.108 0.892
17 C -0.540 4.540
18 S 2.476 3.524
19 O -0.959 6.959
20 O -0.954 6.954
21 C -0.632 4.632
22 C -0.003 4.003
23 C -0.123 4.123
24 C -0.001 4.001
25 Cl -0.057 7.057
26 C -0.115 4.115
27 C -0.021 4.021
28 H 0.087 0.913
29 H 0.096 0.904
30 H 0.043 0.957
31 H 0.077 0.923
32 H 0.046 0.954
33 H 0.367 0.633
34 H 0.265 0.735
35 H 0.194 0.806
36 H 0.179 0.821
37 H 0.164 0.836
38 H 0.171 0.829
39 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.552 -16.452 -13.186 21.141
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 N -0.272 5.272
3 C -0.088 4.088
4 C 0.153 3.847
5 H 0.061 0.939
6 O -0.379 6.379
7 C -0.597 4.597
8 H 0.058 0.942
9 C -0.167 4.167
10 N -0.577 5.577
11 Si 0.755 3.245
12 H -0.223 1.223
13 H -0.225 1.225
14 H -0.120 1.120
15 C -0.002 4.002
16 H 0.126 0.874
17 C -0.674 4.674
18 S 2.659 3.341
19 O -0.956 6.956
20 O -0.951 6.951
21 C -0.718 4.718
22 C -0.022 4.022
23 C -0.142 4.142
24 C -0.028 4.028
25 Cl -0.028 7.028
26 C -0.135 4.135
27 C -0.023 4.023
28 H 0.105 0.895
29 H 0.114 0.886
30 H 0.061 0.939
31 H 0.095 0.905
32 H 0.064 0.936
33 H 0.215 0.785
34 H 0.074 0.926
35 H 0.211 0.789
36 H 0.196 0.804
37 H 0.181 0.819
38 H 0.188 0.812
39 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges -1.083 -17.630 -11.654 21.161
hybrid contribution 0.232 2.401 -0.765 2.531
sum -0.851 -15.229 -12.419 19.669
Atomic orbital electron populations
1.23047 0.84604 1.03959 1.03231 1.62127 1.10446 1.14406 1.40202
1.22793 1.00625 0.87062 0.98270 1.19448 0.79651 0.92486 0.93162
0.93901 1.86602 1.23110 1.71127 1.57101 1.21768 1.35095 1.03643
0.99154 0.94171 1.25753 0.94720 0.94333 1.01936 1.70069 1.44969
1.13324 1.29377 0.86130 0.81774 0.78603 0.77975 1.22276 1.22543
1.11962 1.20838 0.87842 0.94263 0.97244 0.87449 1.30526 1.16164
1.03174 1.17489 1.06349 0.78267 0.73990 0.75505 1.93559 1.81688
1.41513 1.78888 1.93627 1.85648 1.86469 1.29404 1.30753 1.10432
1.16575 1.14055 1.20582 0.90276 0.98602 0.92752 1.21569 1.02364
0.91603 0.98689 1.21068 0.91914 0.90802 0.98995 1.98405 1.69516
1.47507 1.87325 1.21001 0.91768 0.99256 1.01466 1.20408 0.94844
0.93052 0.94021 0.89509 0.88592 0.93869 0.90519 0.93628 0.78485
0.92601 0.78890 0.80391 0.81869 0.81198 0.84018
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.00 -0.05 8.98 127.69 1.15 1.10 16
2 N -0.55 -15.19 4.57 -898.49 -4.11 -19.30 16
3 C 0.04 1.38 4.44 86.30 0.38 1.76 16
4 C 0.21 9.27 2.51 29.84 0.07 9.35 16
5 H 0.04 2.11 7.57 -2.39 -0.02 2.10 16
6 O -0.57 -22.63 7.11 -148.98 -1.06 -23.69 16
7 C -0.56 -30.28 9.34 25.60 0.24 -30.04 16
8 H 0.04 2.38 7.99 -2.91 -0.02 2.35 16
9 C 0.03 1.86 5.47 84.66 0.46 2.32 16
10 N -0.94 -57.75 13.96 21.45 0.30 -57.45 16
11 Si 0.93 45.31 26.99 68.60 1.85 47.16 16
12 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16
13 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16
14 H -0.20 -8.99 5.31 99.48 0.53 -8.46 16
15 C 0.11 2.20 2.35 44.67 0.10 2.30 16
16 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16
17 C -0.54 -7.46 7.08 72.42 0.51 -6.95 16
18 S 2.48 57.23 6.15 -56.49 -0.35 56.88 16
19 O -0.96 -24.92 18.01 -127.82 -2.30 -27.23 16
20 O -0.95 -30.72 18.01 -127.82 -2.30 -33.02 16
21 C -0.63 -15.87 6.16 22.22 0.14 -15.73 16
22 C 0.00 -0.08 10.02 22.20 0.22 0.15 16
23 C -0.12 -2.76 9.87 22.29 0.22 -2.54 16
24 C 0.00 -0.02 6.29 22.18 0.14 0.12 16
25 Cl -0.06 -1.44 28.94 -2.72 -0.08 -1.52 16
26 C -0.12 -3.04 7.58 22.52 0.17 -2.86 16
27 C -0.02 -0.52 4.85 -19.41 -0.09 -0.62 16
28 H 0.09 1.44 5.93 -2.39 -0.01 1.43 16
29 H 0.10 2.63 5.09 -2.39 -0.01 2.62 16
30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16
31 H 0.08 2.78 4.24 -2.39 -0.01 2.77 16
32 H 0.05 1.46 8.03 -2.39 -0.02 1.44 16
33 H 0.37 12.43 9.04 -74.05 -0.67 11.76 16
34 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16
35 H 0.19 0.98 8.14 -2.39 -0.02 0.97 16
36 H 0.18 1.86 5.63 -2.39 -0.01 1.85 16
37 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16
38 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16
39 H 0.14 3.60 7.50 -2.91 -0.02 3.58 16
Total: -1.00 -78.42 338.07 -4.06 -82.49
By element:
Atomic # 1 Polarization: 17.05 SS G_CDS: 0.26 Total: 17.31 kcal
Atomic # 6 Polarization: -45.37 SS G_CDS: 3.72 Total: -41.65 kcal
Atomic # 7 Polarization: -72.94 SS G_CDS: -3.81 Total: -76.74 kcal
Atomic # 8 Polarization: -78.27 SS G_CDS: -5.66 Total: -83.93 kcal
Atomic # 14 Polarization: 45.31 SS G_CDS: 1.85 Total: 47.16 kcal
Atomic # 16 Polarization: 57.23 SS G_CDS: -0.35 Total: 56.88 kcal
Atomic # 17 Polarization: -1.44 SS G_CDS: -0.08 Total: -1.52 kcal
Total: -78.42 -4.06 -82.49 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000930069050.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.704 kcal
(2) G-P(sol) polarization free energy of solvation -78.424 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.128 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.061 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.485 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.189 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds